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IVF0026667 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0026667
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr11:22396921..22397076
RNA-Seq ExpressionIVF0026667
SyntenyIVF0026667
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006281 - DNA repair (biological process)
GO:0015074 - DNA integration (biological process)
GO:0098869 - cellular oxidant detoxification (biological process)
GO:0008622 - epsilon DNA polymerase complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004601 - peroxidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040609.1 DNA polymerase epsilon catalytic subunit A-like [Cucumis melo var. makuwa]1.98e-0955.56Show/hide
Query:  MGKELIIIRGDPALTTTKCSLKTLTKTWEKEDKIFWIKFQNLEIE
        +G   +I++GDP+LT  +CSLKT++KTWE+ED+ F I+FQ +EIE
Subjt:  MGKELIIIRGDPALTTTKCSLKTLTKTWEKEDKIFWIKFQNLEIE
KAA0042327.1 retrotransposon protein [Cucumis melo var. makuwa]2.35e-0956.52Show/hide
Query:  GKELIIIRGDPALTTTKCSLKTLTKTWEKEDKIFWIKFQNLEIEKR
        G   II++GDP LTT +CSLKT+TKTWE ED+ F I+FQN + +++
Subjt:  GKELIIIRGDPALTTTKCSLKTLTKTWEKEDKIFWIKFQNLEIEKR
KAA0062448.1 disease resistance protein [Cucumis melo var. makuwa]2.70e-0955.56Show/hide
Query:  MGKELIIIRGDPALTTTKCSLKTLTKTWEKEDKIFWIKFQNLEIE
        +G   +I++GDP+LT  +CSLKT++KTWE+ED+ F I+FQ +EIE
Subjt:  MGKELIIIRGDPALTTTKCSLKTLTKTWEKEDKIFWIKFQNLEIE
TYK05651.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.98e-0955.56Show/hide
Query:  MGKELIIIRGDPALTTTKCSLKTLTKTWEKEDKIFWIKFQNLEIE
        +G   +I++GDP+LT  +CSLKT++KTWE+ED+ F I+FQ +EIE
Subjt:  MGKELIIIRGDPALTTTKCSLKTLTKTWEKEDKIFWIKFQNLEIE
TYK23088.1 pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa]8.06e-1050Show/hide
Query:  GKELIIIRGDPALTTTKCSLKTLTKTWEKEDKIFWIKFQNLEIEKRGDEE
        GK  +I+ GD + T  +CSLKT++KTWE+ED+ F ++FQN+EI++  +EE
Subjt:  GKELIIIRGDPALTTTKCSLKTLTKTWEKEDKIFWIKFQNLEIEKRGDEE
TrEMBL top hitse value%identityAlignment
A0A5A7TH70 DNA polymerase epsilon catalytic subunit2.4e-0650.98Show/hide
Query:  MGKELIIIRGDPALTTTKCSLKTLTKTWEKEDKIFWIKFQNLEIEKRGDEE
        +G   +I++GDP+LT  +CSLKT++KTWE+ED+ F I+FQ +EIE   + E
Subjt:  MGKELIIIRGDPALTTTKCSLKTLTKTWEKEDKIFWIKFQNLEIEKRGDEE
A0A5A7TKV5 Retrotransposon protein3.2e-0656.52Show/hide
Query:  GKELIIIRGDPALTTTKCSLKTLTKTWEKEDKIFWIKFQNLEIEKR
        G   II++GDP LTT +CSLKT+TKTWE ED+ F I+FQN + +++
Subjt:  GKELIIIRGDPALTTTKCSLKTLTKTWEKEDKIFWIKFQNLEIEKR
A0A5A7V4D8 Disease resistance protein3.2e-0650.98Show/hide
Query:  MGKELIIIRGDPALTTTKCSLKTLTKTWEKEDKIFWIKFQNLEIEKRGDEE
        +G   +I++GDP+LT  +CSLKT++KTWE+ED+ F I+FQ +EIE   + E
Subjt:  MGKELIIIRGDPALTTTKCSLKTLTKTWEKEDKIFWIKFQNLEIEKRGDEE
A0A5D3C142 Retrotransposable element Tf22.4e-0650.98Show/hide
Query:  MGKELIIIRGDPALTTTKCSLKTLTKTWEKEDKIFWIKFQNLEIEKRGDEE
        +G   +I++GDP+LT  +CSLKT++KTWE+ED+ F I+FQ +EIE   + E
Subjt:  MGKELIIIRGDPALTTTKCSLKTLTKTWEKEDKIFWIKFQNLEIEKRGDEE
A0A5D3DUJ0 Ty3/gypsy retrotransposon protein3.2e-0650.98Show/hide
Query:  MGKELIIIRGDPALTTTKCSLKTLTKTWEKEDKIFWIKFQNLEIEKRGDEE
        +G   +I++GDP+LT  +CSLKT++KTWE+ED+ F I+FQ +EIE   + E
Subjt:  MGKELIIIRGDPALTTTKCSLKTLTKTWEKEDKIFWIKFQNLEIEKRGDEE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAGGAACTGATCATTATCAGGGGAGATCCCGCGTTAACTACCACAAAATGTTCTTTAAAAACCTTGACTAAGACATGGGAGAAGGAGGATAAAATTTTTTGGAT
TAAATTTCAAAATCTGGAGATAGAGAAAAGAGGGGACGAAGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAAGGAACTGATCATTATCAGGGGAGATCCCGCGTTAACTACCACAAAATGTTCTTTAAAAACCTTGACTAAGACATGGGAGAAGGAGGATAAAATTTTTTGGAT
TAAATTTCAAAATCTGGAGATAGAGAAAAGAGGGGACGAAGAATAA
Protein sequenceShow/hide protein sequence
MGKELIIIRGDPALTTTKCSLKTLTKTWEKEDKIFWIKFQNLEIEKRGDEE