CuGenDBv2

Gene ID	IVF0026718
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	PMD domain-containing protein
Genome location	chr04:22953143..22953847
RNA-Seq Expression	IVF0026718
Synteny	IVF0026718
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0031751.1 hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa]

1.23e-130

94.15

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Query:  MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE
        MPPAITLDNILYH RICTR N LSELYLP R LEP KHVTQRFTDWWTTKHGTYFEDNRHHLVSS IPPPSQPRLPKNRGSNLGGKEIRLVEAM PNLEE
Subjt:  MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE

Query:  EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL
        EVKEHKDESDSSKSDRHWKR LKKAKVS DHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTS+TPVNKPTEQSLRPSAL
Subjt:  EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL

Query:  LEKIR
        LE+IR
Subjt:  LEKIR

KAA0047478.1 hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]

3.95e-125

93.66

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Query:  MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE
        M PAITLDNILYH RICTR N LSELYLPAR LEP KHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPP SQPRLPKNRGSNLGGKEIRLVEAM PNLEE
Subjt:  MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE

Query:  EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL
        EVKE KDESDSSKSDRHWKR LKKAKVS DHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTS+TPVNKPTEQSLRPSAL
Subjt:  EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL

Query:  LEKIR
        LE+IR
Subjt:  LEKIR

KAA0048379.1 hypothetical protein E6C27_scaffold264G00980 [Cucumis melo var. makuwa]

6.71e-145

100

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Query:  MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE
        MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE
Subjt:  MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE

Query:  EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL
        EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL
Subjt:  EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL

Query:  LEKIR
        LEKIR
Subjt:  LEKIR

KAA0054204.1 hypothetical protein E6C27_scaffold131G001410 [Cucumis melo var. makuwa]

8.15e-125

90.2

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Query:  MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE
        MPPAI L+NILYH RICTR N LSELYLPA  LEP KHVTQRF DWWTTKHGTYFEDNRHHLVSS IPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE
Subjt:  MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE

Query:  EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL
        EVKEHKDESD+SKSDRH KR LKKAKVS DHPDGRGLSALEVPDVPPLSPLNDHLEG IEPDSDESL GP+AVDSAFEEVGTSKTPVNKP EQSLRPS+L
Subjt:  EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL

Query:  LEKI
        LE+I
Subjt:  LEKI

TYK19639.1 hypothetical protein E5676_scaffold242G00260 [Cucumis melo var. makuwa]

2.46e-122

92.2

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Query:  MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE
        MPPAITLDNILYH RICTR N L ELYLPAR LEP KHVTQRFTDWWTTKHGTYFEDNRHHLVSS IPPPSQPRLPKNRGSNLGGKEIRLVEAM PNLEE
Subjt:  MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE

Query:  EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL
        EVKEH  ESDSSKSD HWKR LKKAKVS DHP+GRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKP EQSLRPSAL
Subjt:  EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL

Query:  LEKIR
        LE+IR
Subjt:  LEKIR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SQC9 PMD domain-containing protein

1.8e-105

94.15

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Query:  MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE
        MPPAITLDNILYH RICTR N LSELYLP R LEP KHVTQRFTDWWTTKHGTYFEDNRHHLVSS IPPPSQPRLPKNRGSNLGGKEIRLVEAM PNLEE
Subjt:  MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE

Query:  EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL
        EVKEHKDESDSSKSDRHWKR LKKAKVS DHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTS+TPVNKPTEQSLRPSAL
Subjt:  EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL

Query:  LEKIR
        LE+IR
Subjt:  LEKIR

A0A5A7TFC8 PMD domain-containing protein

2.7e-101

92.2

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Query:  MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE
        MPPAITLDNILYH RICTR N L ELYLPAR LEP KHVTQRFTDWWTTKHGTYFEDNRHHLVSS IPPPSQPRLPKNRGSNLGGKEIRLVEAM PNLEE
Subjt:  MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE

Query:  EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL
        EVKEH  ESDSSKSD HWKR LKKAKVS DHP+GRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKP EQSLRPSAL
Subjt:  EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL

Query:  LEKIR
        LE+IR
Subjt:  LEKIR

A0A5A7TX42 Uncharacterized protein

1.3e-103

93.66

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Query:  MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE
        M PAITLDNILYH RICTR N LSELYLPAR LEP KHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPP SQPRLPKNRGSNLGGKEIRLVEAM PNLEE
Subjt:  MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE

Query:  EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL
        EVKE KDESDSSKSDRHWKR LKKAKVS DHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTS+TPVNKPTEQSLRPSAL
Subjt:  EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL

Query:  LEKIR
        LE+IR
Subjt:  LEKIR

A0A5A7U4K9 Uncharacterized protein

6.3e-114

100

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Query:  MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE
        MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE
Subjt:  MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE

Query:  EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL
        EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL
Subjt:  EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL

Query:  LEKIR
        LEKIR
Subjt:  LEKIR

A0A5D3D7V4 PMD domain-containing protein

2.7e-101

92.2

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Query:  MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE
        MPPAITLDNILYH RICTR N L ELYLPAR LEP KHVTQRFTDWWTTKHGTYFEDNRHHLVSS IPPPSQPRLPKNRGSNLGGKEIRLVEAM PNLEE
Subjt:  MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEE

Query:  EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL
        EVKEH  ESDSSKSD HWKR LKKAKVS DHP+GRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKP EQSLRPSAL
Subjt:  EVKEHKDESDSSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSAL

Query:  LEKIR
        LE+IR
Subjt:  LEKIR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCCACCTGCGATCACGCTGGATAATATATTATATCACTGTAGAATATGTACGAGGCATAACATTTTATCCGAGCTATACTTGCCCGCCCGTTTGTTAGAGCCCTACAA
GCATGTGACTCAGCGATTTACAGACTGGTGGACTACGAAGCACGGGACCTATTTTGAGGATAACAGACACCATTTGGTGAGTAGTGCCATTCCTCCCCCTTCACAGCCTA
GACTACCGAAGAACCGAGGGAGCAACCTGGGTGGTAAAGAAATTCGATTGGTTGAGGCGATGACTCCTAATCTTGAGGAGGAGGTAAAGGAGCATAAAGATGAGAGCGAT
AGCAGCAAAAGTGATCGTCATTGGAAGAGACATTTGAAGAAAGCGAAGGTATCGAGTGATCATCCCGACGGAAGGGGTTTAAGTGCTTTGGAAGTTCCTGATGTTCCACC
ACTGTCACCATTGAACGATCATCTTGAAGGACTTATAGAGCCAGACAGTGATGAATCTTTGACGGGACCTCACGCAGTTGATTCGGCCTTTGAGGAAGTTGGTACCTCGA
AAACTCCCGTCAATAAACCGACTGAACAATCCTTACGCCCATCTGCTCTTCTCGAGAAGATTCGTTGA

mRNA sequence

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Protein sequence

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MPPAITLDNILYHCRICTRHNILSELYLPARLLEPYKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEEEVKEHKDESD
SSKSDRHWKRHLKKAKVSSDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTPVNKPTEQSLRPSALLEKIR

IVF0026718 (gene) of Melon (IVF77) v1 genome