CuGenDBv2

Gene ID	IVF0026806
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Genome location	chr12:5568202..5568642
RNA-Seq Expression	IVF0026806
Synteny	IVF0026806
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0050670.1 gag/pol protein [Cucumis melo var. makuwa]

3.30e-85

94.52

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Query:  MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY
        MLA DKLNGNNYASWKNTINTVLIIDDL FVLVEECPQVPAANATRT+RE YERWAKANEKARAYILAS S+VLAKKHESMLT REIMDSLQEMFGQASY
Subjt:  MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY

Query:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
        QIKHDAL YIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
Subjt:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

KAA0051847.1 gag/pol protein [Cucumis melo var. makuwa]

5.34e-97

100

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Query:  MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY
        MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY
Subjt:  MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY

Query:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
        QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
Subjt:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

KAA0054432.1 gag/pol protein [Cucumis melo var. makuwa]

1.02e-88

94.52

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Query:  MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY
        MLA DKLNGNNYASWKNTINTVLIIDDL FVLVEECPQVPAANATRTVRE YERWAKAN+KARAYILASLS+VLAKKHESMLT REIMDSLQEMF QASY
Subjt:  MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY

Query:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
        QIKHDALKYIYNARMNEGASVREHVLNMMVHFNV EMNGAVIDEAS
Subjt:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

TYK07761.1 gag/pol protein [Cucumis melo var. makuwa]

2.36e-92

96.55

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Query:  MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY
        MLA DKLNGNNYASWKNTINTVLIIDDL FVLVEECPQVPAANATRTVRE YERWAKANEKARAYILASLS+VLAKKHESMLT REIMDSLQEMFGQASY
Subjt:  MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY

Query:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEA
        QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEA
Subjt:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEA

XP_008464721.1 PREDICTED: uncharacterized protein LOC103502537 [Cucumis melo]

5.16e-97

100

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Query:  MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY
        MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY
Subjt:  MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY

Query:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
        QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
Subjt:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CM79 uncharacterized protein LOC103502537

1.3e-73

100

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Query:  MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY
        MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY
Subjt:  MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY

Query:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
        QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
Subjt:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

A0A5A7SMH8 Gag/pol protein

1.0e-70

96.58

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Query:  MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY
        MLA DKLNGNNYASWKNTINTVLIIDDL FVLVEECPQVPAANATRTVRE YERWAKANEKARAYILASLS+VLAKKHESMLT REIMDSLQEMFGQASY
Subjt:  MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY

Query:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
        QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
Subjt:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

A0A5A7TU93 Gag/pol protein

1.0e-70

96.58

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Query:  MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY
        MLA DKLNGNNYASWKNTINTVLIIDDL FVLVEECPQVPAANATRTVRE YERWAKANEKARAYILASLS+VLAKKHESMLT REIMDSLQEMFGQASY
Subjt:  MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY

Query:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
        QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
Subjt:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

A0A5A7UBR0 Gag/pol protein

1.3e-73

100

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Query:  MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY
        MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY
Subjt:  MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY

Query:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
        QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
Subjt:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

A0A5D3CPJ6 Gag/pol protein

1.0e-70

96.58

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Query:  MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY
        MLA DKLNGNNYASWKNTINTVLIIDDL FVLVEECPQVPAANATRTVRE YERWAKANEKARAYILASLS+VLAKKHESMLT REIMDSLQEMFGQASY
Subjt:  MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASY

Query:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
        QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS
Subjt:  QIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCTGGCTGTTGATAAACTTAATGGCAATAATTATGCATCTTGGAAAAATACTATCAACACTGTGCTAATCATCGATGACCTTATATTTGTCCTAGTTGAGGAGTGTCC
TCAAGTCCCAGCTGCTAATGCAACTCGAACTGTTCGAGAAGCATATGAGCGCTGGGCCAAGGCAAATGAAAAAGCCCGAGCATACATCTTGGCAAGCTTATCTAAAGTAT
TGGCCAAGAAACATGAATCAATGCTCACTACTCGTGAGATCATGGACTCCTTGCAGGAGATGTTTGGTCAAGCCTCTTATCAGATCAAGCATGATGCTCTGAAATACATT
TATAATGCCCGTATGAATGAGGGAGCCTCAGTACGAGAACATGTTCTCAATATGATGGTTCATTTCAACGTGGCAGAAATGAATGGGGCCGTCATCGATGAAGCCAGTTA
G

mRNA sequence

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Protein sequence

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MLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYI
YNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEAS

IVF0026806 (gene) of Melon (IVF77) v1 genome