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IVF0026838 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0026838
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr12:13145977..13146628
RNA-Seq ExpressionIVF0026838
SyntenyIVF0026838
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035633.1 retrotransposon protein [Cucumis melo var. makuwa]2.92e-4675.7Show/hide
Query:  MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMY
        MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTM                +K+ +    + ATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMY
Subjt:  MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMY

Query:  SQDIDMS
        SQDIDMS
Subjt:  SQDIDMS

KAA0040490.1 retrotransposon protein [Cucumis melo var. makuwa]2.74e-3962.71Show/hide
Query:  MATSSRAPWHVWTKKEEDTLVECLVDLVVM---EDGNPT--------MSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNKSGGYEGFDM
        M+TS+RAP HVWTK+EEDTLVECL++LV+M   +  N T        +SHPA K L NKLFPYY++  YVFGRDRAT   A+TFV+VGSN+ GGY+ FDM
Subjt:  MATSSRAPWHVWTKKEEDTLVECLVDLVVM---EDGNPT--------MSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNKSGGYEGFDM

Query:  SDGNEEFPSMYSQDIDMS
         DGNEEFP +YSQ ID+S
Subjt:  SDGNEEFPSMYSQDIDMS

KAA0044982.1 transposase [Cucumis melo var. makuwa]9.24e-3867.33Show/hide
Query:  MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMY
        MAT SRA  HVWTK+EEDTL+ECLV+LV + DGN  MSHPA   L NK F YY+KL Y+FGRDRAT  F +TF++VGSN+   +EGFDMSDGNE FPS+Y
Subjt:  MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMY

Query:  S
        S
Subjt:  S

KAA0055621.1 retrotransposon protein [Cucumis melo var. makuwa]5.88e-3961.34Show/hide
Query:  MATSSRAPWHVWTKKEEDTLVECLVDLVVM-----EDGN------PTMSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNK-SGGYEGFD
        M TS+RAP HVWTK++E TLVEC ++LV M     ++G         +SHPA KRL NK FPYY++L YVFGR+RAT  FAETFVNVGSN+  GGY+ FD
Subjt:  MATSSRAPWHVWTKKEEDTLVECLVDLVVM-----EDGN------PTMSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNK-SGGYEGFD

Query:  MSDGNEEFPSMYSQDIDMS
        M DGNEEFP +YSQ ID+S
Subjt:  MSDGNEEFPSMYSQDIDMS

KAA0060443.1 retrotransposon protein [Cucumis melo var. makuwa]1.91e-3964.49Show/hide
Query:  MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMY
        M+TS+RAP HVWTK EE T+VECL++LV M D NP MSHPA K L NK FPYY++L YVF  DRAT  F E F +VGSN+  GY+ FD++DGNEEFP +Y
Subjt:  MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMY

Query:  SQDIDMS
        SQ ID+S
Subjt:  SQDIDMS

TrEMBL top hitse value%identityAlignment
A0A5A7TB06 Retrotransposon protein1.2e-3162.71Show/hide
Query:  MATSSRAPWHVWTKKEEDTLVECLVDLVVM---EDGNPT--------MSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNKSGGYEGFDM
        M+TS+RAP HVWTK+EEDTLVECL++LV+M   +  N T        +SHPA K L NKLFPYY++  YVFGRDRAT   A+TFV+VGSN+ GGY+ FDM
Subjt:  MATSSRAPWHVWTKKEEDTLVECLVDLVVM---EDGNPT--------MSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNKSGGYEGFDM

Query:  SDGNEEFPSMYSQDIDMS
         DGNEEFP +YSQ ID+S
Subjt:  SDGNEEFPSMYSQDIDMS

A0A5A7UWT1 Retrotransposon protein6.6e-3064.49Show/hide
Query:  MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMY
        M+TS+RAP HVWT KEE T+VECL++LV M D NP MSHPA K L NK FPYY++L YVF  DRAT  F E F +VGSN+  GY+ FD++DGNEEFP +Y
Subjt:  MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMY

Query:  SQDIDMS
        SQ ID+S
Subjt:  SQDIDMS

A0A5D3D4Q6 Retrotransposon protein6.6e-3064.49Show/hide
Query:  MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMY
        M+TS+RAP HVWT KEE T+VECL++LV M D NP MSHPA K L NK FPYY++L YVF  DRAT  F E F +VGSN+  GY+ FD++DGNEEFP +Y
Subjt:  MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMY

Query:  SQDIDMS
        SQ ID+S
Subjt:  SQDIDMS

A0A5D3DLD9 Retrotransposon protein8.6e-3061.34Show/hide
Query:  MATSSRAPWHVWTKKEEDTLVECLVDLVVM-----EDGN------PTMSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNK-SGGYEGFD
        M TS+RAP HVWTK++E TLVEC ++LV M     ++G         +SHPA KRL NK FPYY++L YVFGR+RAT  FAETFVNVGSN+  GGY+ FD
Subjt:  MATSSRAPWHVWTKKEEDTLVECLVDLVVM-----EDGN------PTMSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNK-SGGYEGFD

Query:  MSDGNEEFPSMYSQDIDMS
        M DGNEEFP +YSQ ID+S
Subjt:  MSDGNEEFPSMYSQDIDMS

A0A5D3E4X9 Retrotransposon protein1.2e-3475.7Show/hide
Query:  MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMY
        MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTM                +K+ +    + ATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMY
Subjt:  MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMY

Query:  SQDIDMS
        SQDIDMS
Subjt:  SQDIDMS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACCTCATCGCGTGCCCCGTGGCATGTATGGACTAAGAAGGAGGAGGACACTCTTGTAGAGTGTTTAGTGGATTTGGTTGTCATGGAGGATGGAAATCCGACAAT
GTCGCATCCAGCAATGAAAAGGCTCTTTAACAAACTGTTTCCCTATTACAACAAACTTAAATATGTGTTCGGTCGCGATAGGGCGACGAGTCACTTCGCTGAGACATTCG
TCAACGTGGGGTCTAACAAGTCTGGTGGGTATGAGGGTTTTGACATGTCGGATGGGAACGAGGAGTTCCCATCCATGTACAGCCAGGATATTGACATGTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAACCTCATCGCGTGCCCCGTGGCATGTATGGACTAAGAAGGAGGAGGACACTCTTGTAGAGTGTTTAGTGGATTTGGTTGTCATGGAGGATGGAAATCCGACAAT
GTCGCATCCAGCAATGAAAAGGCTCTTTAACAAACTGTTTCCCTATTACAACAAACTTAAATATGTGTTCGGTCGCGATAGGGCGACGAGTCACTTCGCTGAGACATTCG
TCAACGTGGGGTCTAACAAGTCTGGTGGGTATGAGGGTTTTGACATGTCGGATGGGAACGAGGAGTTCCCATCCATGTACAGCCAGGATATTGACATGTCTTAG
Protein sequenceShow/hide protein sequence
MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMSHPAMKRLFNKLFPYYNKLKYVFGRDRATSHFAETFVNVGSNKSGGYEGFDMSDGNEEFPSMYSQDIDMS