CuGenDBv2

Gene ID	IVF0026862
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Transposon Ty3-G Gag-Pol polyprotein
Genome location	chr04:6635049..6635315
RNA-Seq Expression	IVF0026862
Synteny	IVF0026862
Gene Ontology terms	GO:0006260 - DNA replication (biological process) GO:0006281 - DNA repair (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0010158 - abaxial cell fate specification (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0008622 - epsilon DNA polymerase complex (cellular component) GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032688.1 putative polyprotein [Cucumis melo var. makuwa]

4.31e-56

100

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Query:  MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV
        MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV
Subjt:  MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV

KAA0054183.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]

2.59e-37

81.82

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Query:  MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV
        MKKQAD HRRELKF++GDEVYLKLRPYRQ+SLARK CEKLAPK YGPY IIEEIGEVAY L+L   AIIHNVFHV QLKLKLG + QV
Subjt:  MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV

KAA0062449.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]

2.13e-40

81.82

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Query:  MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV
        MKKQAD HRRELKF++GDEVYLKLRPYRQ+SLARK CEKLAPK YGPY I+EEIGEVAY L+L  EAIIHNVFHV QLKLKLG + QV
Subjt:  MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV

KAA0066550.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.12e-37

80.68

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Query:  MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV
        MKKQAD HR+ELKF++GDEVYLKLRPYRQ+SLARK CEKLAPK YGPY I+EEIGEVAY L+L  EAIIHNVFHV QLKLKLG + QV
Subjt:  MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV

TYJ98047.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]

3.90e-38

81.82

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Query:  MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV
        MKKQAD HRRELKF++GDEVYLKLRPYRQ+SLARK CEKLAPK YGPY I+EEIGEVAY L+L  EAIIHNVFHV QLKLKLG + QV
Subjt:  MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SQ72 Putative polyprotein

1.6e-42

100

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Query:  MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV
        MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV
Subjt:  MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV

A0A5A7VHA7 Ty3/gypsy retrotransposon protein

1.7e-31

80.68

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Query:  MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV
        MKKQAD HR+ELKF++GDEVYLKLRPYRQ+SLARK CEKLAPK YGPY I+EEIGEVAY L+L  EAIIHNVFHV QLKLKLG + QV
Subjt:  MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV

A0A5D3BFZ9 Transposon Tf2-6 polyprotein

7.5e-32

81.82

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Query:  MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV
        MKKQAD HRRELKF++GDEVYLKLRPYRQ+SLARK CEKLAPK YGPY I+EEIGEVAY L+L  EAIIHNVFHV QLKLKLG + QV
Subjt:  MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV

A0A5D3CUI1 Transposon Ty3-G Gag-Pol polyprotein

3.7e-31

81.82

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Query:  MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV
        MKKQAD HRRELKF++GDEVYLKLRPYRQ+SLARK CEKLAPK YGPY IIEEIGEVAY L+L   AIIHNVFHV QLKLKLG + QV
Subjt:  MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV

A0A5D3DUN8 Transposon Ty3-G Gag-Pol polyprotein

7.5e-32

81.82

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Query:  MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV
        MKKQAD HRRELKF++GDEVYLKLRPYRQ+SLARK CEKLAPK YGPY I+EEIGEVAY L+L  EAIIHNVFHV QLKLKLG + QV
Subjt:  MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAAAAACAGGCGGATCGACATCGTCGAGAACTGAAATTCCAGATAGGAGATGAGGTTTATCTGAAGTTGCGCCCTTATAGGCAACAGTCATTAGCAAGGAAATGCTG
TGAAAAATTAGCTCCAAAGATCTATGGGCCGTACTGTATCATTGAGGAAATTGGGGAAGTCGCTTACCATCTAGATCTTCTTTCCGAGGCAATAATACACAATGTATTCC
ACGTCCCGCAGCTTAAACTGAAGTTGGGAAAAACACAACAAGTGTAG

mRNA sequence

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Protein sequence

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MKKQADRHRRELKFQIGDEVYLKLRPYRQQSLARKCCEKLAPKIYGPYCIIEEIGEVAYHLDLLSEAIIHNVFHVPQLKLKLGKTQQV

IVF0026862 (gene) of Melon (IVF77) v1 genome