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IVF0026881 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0026881
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr08:26517425..26517745
RNA-Seq ExpressionIVF0026881
SyntenyIVF0026881
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047411.1 gag/pol protein [Cucumis melo var. makuwa]9.33e-1951.55Show/hide
Query:  MRVKLPQTQFSHPVLKSGPSTVSSLSFVLVISLSIFWARTLRTLTHTPGMLPDMFSQGIGPKASSLEGQLRCDPKWSERW-QCFQRVGNARTLSETT
        MR ++P TQF H  +K+ P+TVS    VLVI  S F   T RT  +  G++P +F Q I   ASSLEG+LRC PK S+RW   FQRV NA  +SETT
Subjt:  MRVKLPQTQFSHPVLKSGPSTVSSLSFVLVISLSIFWARTLRTLTHTPGMLPDMFSQGIGPKASSLEGQLRCDPKWSERW-QCFQRVGNARTLSETT

KAA0059489.1 ribosomal protein L5 [Cucumis melo var. makuwa]2.37e-2367.11Show/hide
Query:  LPQTQFSHPVLKSGPSTVSSLSFVLVISLSIFWARTLRTLTHTPGMLPDMFSQGIGPKASSLEGQLRCDPKWSERW
        +P+TQFSHP +KSG  TVSSL  V VISLSIF AR   T  HTPGML   FSQGIG + SSLEGQL C+PK S+RW
Subjt:  LPQTQFSHPVLKSGPSTVSSLSFVLVISLSIFWARTLRTLTHTPGMLPDMFSQGIGPKASSLEGQLRCDPKWSERW

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]2.54e-2367.09Show/hide
Query:  RVKLPQTQFSHPVLKSGPSTVSSLSFVLVISLSIFWARTLRTLTHTPGMLPDMFSQGIGPKASSLEGQLRCDPKWSERW
        R ++P++QFS    KS   TVSSL FVLVI+LSIF ART RT THT GMLPDMFS+GIG +ASSLEG+L C+PK S+RW
Subjt:  RVKLPQTQFSHPVLKSGPSTVSSLSFVLVISLSIFWARTLRTLTHTPGMLPDMFSQGIGPKASSLEGQLRCDPKWSERW

TYK15439.1 uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa]1.35e-2066.67Show/hide
Query:  KSGPSTVSSLSFVLVISLSIFWARTLRTLTHTPGMLPDMFSQGIGPKASSLEGQLRCDPKWSERWQCFQRVG
        KSGP TVSS+  VLVI LSIF A   RT THTPGMLPDMFS GI  +A SLEG+L CDPK SERW      G
Subjt:  KSGPSTVSSLSFVLVISLSIFWARTLRTLTHTPGMLPDMFSQGIGPKASSLEGQLRCDPKWSERWQCFQRVG

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]3.53e-2163.86Show/hide
Query:  KSGPSTVSSLSFVLVISLSIFWARTLRTLTHTPGMLPDMFSQGIGPKASSLEGQLRCDPKWSERWQCFQRVGNARTLSETTRN
        K+   TVSSL F+LVISL IF A T RT THT  MLPDMFSQGIG +ASSLEG+LRCDPKW +RW   Q  G    LS   RN
Subjt:  KSGPSTVSSLSFVLVISLSIFWARTLRTLTHTPGMLPDMFSQGIGPKASSLEGQLRCDPKWSERWQCFQRVGNARTLSETTRN

TrEMBL top hitse value%identityAlignment
A0A5A7V129 Ribosomal protein L5 (Mitochondrion)2.2e-1767.11Show/hide
Query:  LPQTQFSHPVLKSGPSTVSSLSFVLVISLSIFWARTLRTLTHTPGMLPDMFSQGIGPKASSLEGQLRCDPKWSERW
        +P+TQFSHP +KSG  TVSSL  V VISLSIF AR   T  HTPGML   FSQGIG + SSLEGQL C+PK S+RW
Subjt:  LPQTQFSHPVLKSGPSTVSSLSFVLVISLSIFWARTLRTLTHTPGMLPDMFSQGIGPKASSLEGQLRCDPKWSERW

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein5.2e-1967.09Show/hide
Query:  RVKLPQTQFSHPVLKSGPSTVSSLSFVLVISLSIFWARTLRTLTHTPGMLPDMFSQGIGPKASSLEGQLRCDPKWSERW
        R ++P++QFS    KS   TVSSL FVLVI+LSIF ART RT THT GMLPDMFS+GIG +ASSLEG+L C+PK S+RW
Subjt:  RVKLPQTQFSHPVLKSGPSTVSSLSFVLVISLSIFWARTLRTLTHTPGMLPDMFSQGIGPKASSLEGQLRCDPKWSERW

A0A5D3CUK8 Gag/pol protein1.0e-1451.55Show/hide
Query:  MRVKLPQTQFSHPVLKSGPSTVSSLSFVLVISLSIFWARTLRTLTHTPGMLPDMFSQGIGPKASSLEGQLRCDPKWSERW-QCFQRVGNARTLSETT
        MR ++P TQF H  +K+ P+TVS    VLVI  S F   T RT  +  G++P +F Q I   ASSLEG+LRC PK S+RW   FQRV NA  +SETT
Subjt:  MRVKLPQTQFSHPVLKSGPSTVSSLSFVLVISLSIFWARTLRTLTHTPGMLPDMFSQGIGPKASSLEGQLRCDPKWSERW-QCFQRVGNARTLSETT

A0A5D3CZ27 ULP_PROTEASE domain-containing protein2.7e-1571.21Show/hide
Query:  LKSGPSTVSSLSFVLVISLSIFWARTLRTLTHTPGMLPDMFSQGIGPKASSLEGQLRCDPKWSERW
        +KSGP TVSS+  VLVI LSIF A   RT THTPGMLPDMFS GI  +A SLEG+L CDPK SERW
Subjt:  LKSGPSTVSSLSFVLVISLSIFWARTLRTLTHTPGMLPDMFSQGIGPKASSLEGQLRCDPKWSERW

A0A5D3DIF8 Gag/pol protein4.8e-1763.86Show/hide
Query:  KSGPSTVSSLSFVLVISLSIFWARTLRTLTHTPGMLPDMFSQGIGPKASSLEGQLRCDPKWSERWQCFQRVGNARTLSETTRN
        K+   TVSSL F+LVISL IF A T RT THT  MLPDMFSQGIG +ASSLEG+LRCDPKW +RW   Q  G    LS   RN
Subjt:  KSGPSTVSSLSFVLVISLSIFWARTLRTLTHTPGMLPDMFSQGIGPKASSLEGQLRCDPKWSERWQCFQRVGNARTLSETTRN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGTGAAATTGCCCCAGACTCAGTTTTCTCATCCTGTGTTAAAAAGCGGTCCCTCAACGGTTTCTTCCCTTTCATTCGTATTGGTCATAAGTCTTTCGATCTTCTG
GGCTCGTACTCTGAGGACTTTAACACACACTCCTGGCATGCTCCCTGACATGTTTTCCCAAGGTATAGGTCCGAAAGCGAGCTCGTTGGAGGGACAACTAAGGTGCGACC
CAAAATGGTCCGAAAGATGGCAATGCTTCCAACGAGTGGGGAACGCACGTACGTTGTCAGAAACCACTAGAAATGCGCTTGCAGCGAAGGAAATAGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGAGTGAAATTGCCCCAGACTCAGTTTTCTCATCCTGTGTTAAAAAGCGGTCCCTCAACGGTTTCTTCCCTTTCATTCGTATTGGTCATAAGTCTTTCGATCTTCTG
GGCTCGTACTCTGAGGACTTTAACACACACTCCTGGCATGCTCCCTGACATGTTTTCCCAAGGTATAGGTCCGAAAGCGAGCTCGTTGGAGGGACAACTAAGGTGCGACC
CAAAATGGTCCGAAAGATGGCAATGCTTCCAACGAGTGGGGAACGCACGTACGTTGTCAGAAACCACTAGAAATGCGCTTGCAGCGAAGGAAATAGGCTGA
Protein sequenceShow/hide protein sequence
MRVKLPQTQFSHPVLKSGPSTVSSLSFVLVISLSIFWARTLRTLTHTPGMLPDMFSQGIGPKASSLEGQLRCDPKWSERWQCFQRVGNARTLSETTRNALAAKEIG