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IVF0026962 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0026962
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pol polyprotein
Genome locationchr08:17509780..17510190
RNA-Seq ExpressionIVF0026962
SyntenyIVF0026962
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035422.1 gag-proteinase polyprotein [Cucumis melo var. makuwa]1.57e-5062.69Show/hide
Query:  SKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALK
        SKCWK ++ G E  S KD   K+ LK +ITW+K++DE + GNS ALNA+FN V QN+FK  NT   AKEAWNILE AYEGTSK+K+SKLQIL+ +FEA+K
Subjt:  SKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALK

Query:  MAEEETIEEFNVRVLDLANEPFTLREKISDSKMV
        + E+ETI EFNVRVLDLANE F L EK++++K V
Subjt:  MAEEETIEEFNVRVLDLANEPFTLREKISDSKMV

KAA0038855.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.46e-5368.15Show/hide
Query:  MGSKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEA
        M SKCWK VL G EL S KD   K  LKP+ITWTKE DE SLGN  ALNALFN ++ NVFK+ NT TSAKEAWNILEV YEGTSK+KV +LQILT RFEA
Subjt:  MGSKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEA

Query:  LKMAEEETIEEFNVRVLDLANEPFTLREKISDSKM
        LK+ ++ETI +FNV +LDL NE F + EKI+ SKM
Subjt:  LKMAEEETIEEFNVRVLDLANEPFTLREKISDSKM

KAA0060354.1 gag-pol polyprotein [Cucumis melo var. makuwa]5.10e-5071.54Show/hide
Query:  ELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALKMAEEETIEEFN
        E  S KD T K + KP+ITW KEEDE SLGNS ALNALFN V Q+VFK+ NT TS K+ WN+LEVAYEGTS +KVS+LQILT RFEALKM EEETI EFN
Subjt:  ELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALKMAEEETIEEFN

Query:  VRVLDLANEPFTLREKISDSKMV
        VRVLD ANE F L E I +SKMV
Subjt:  VRVLDLANEPFTLREKISDSKMV

TYK29881.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.19e-8999.26Show/hide
Query:  MGSKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEA
        MGSKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEA
Subjt:  MGSKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEA

Query:  LKMAEEETIEEFNVRVLDLANEPFTLREKISDSKMV
        LKMA+EETIEEFNVRVLDLANEPFTLREKISDSKMV
Subjt:  LKMAEEETIEEFNVRVLDLANEPFTLREKISDSKMV

XP_008464095.1 PREDICTED: uncharacterized protein LOC103502061 [Cucumis melo]1.65e-4862.69Show/hide
Query:  SKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALK
        SKCWK ++ G E  S KD   K+ LK +ITW+K++DE + GNS ALNA+FN V QN+FK  NT   AKEAWNILE AYEGTSK+K+SKLQIL+ +FEA+K
Subjt:  SKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALK

Query:  MAEEETIEEFNVRVLDLANEPFTLREKISDSKMV
        + E+ETI EFNVRVLDLANE F L EK++++K V
Subjt:  MAEEETIEEFNVRVLDLANEPFTLREKISDSKMV

TrEMBL top hitse value%identityAlignment
A0A1S3CKP5 uncharacterized protein LOC1035020615.8e-3962.69Show/hide
Query:  SKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALK
        SKCWK ++ G E  S KD   K+ LK +ITW+K++DE + GNS ALNA+FN V QN+FK  NT   AKEAWNILE AYEGTSK+K+SKLQIL+ +FEA+K
Subjt:  SKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALK

Query:  MAEEETIEEFNVRVLDLANEPFTLREKISDSKMV
        + E+ETI EFNVRVLDLANE F L EK++++K V
Subjt:  MAEEETIEEFNVRVLDLANEPFTLREKISDSKMV

A0A5A7SVY3 Gag-proteinase polyprotein5.8e-3962.69Show/hide
Query:  SKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALK
        SKCWK ++ G E  S KD   K+ LK +ITW+K++DE + GNS ALNA+FN V QN+FK  NT   AKEAWNILE AYEGTSK+K+SKLQIL+ +FEA+K
Subjt:  SKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALK

Query:  MAEEETIEEFNVRVLDLANEPFTLREKISDSKMV
        + E+ETI EFNVRVLDLANE F L EK++++K V
Subjt:  MAEEETIEEFNVRVLDLANEPFTLREKISDSKMV

A0A5A7UZ81 Gag-pol polyprotein1.1e-3771.54Show/hide
Query:  ELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALKMAEEETIEEFN
        E  S KD T K + KP+ITW KEEDE SLGNS ALNALFN V Q+VFK+ NT TS K+ WN+LEVAYEGTS +KVS+LQILT RFEALKM EEETI EFN
Subjt:  ELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALKMAEEETIEEFN

Query:  VRVLDLANEPFTLREKISDSKMV
        VRVLD ANE F L E I +SKMV
Subjt:  VRVLDLANEPFTLREKISDSKMV

A0A5D3CDY8 Gag-pol polyprotein1.1e-4068.15Show/hide
Query:  MGSKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEA
        M SKCWK VL G EL S KD   K  LKP+ITWTKE DE SLGN  ALNALFN ++ NVFK+ NT TSAKEAWNILEV YEGTSK+KV +LQILT RFEA
Subjt:  MGSKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEA

Query:  LKMAEEETIEEFNVRVLDLANEPFTLREKISDSKM
        LK+ ++ETI +FNV +LDL NE F + EKI+ SKM
Subjt:  LKMAEEETIEEFNVRVLDLANEPFTLREKISDSKM

A0A5D3E2Q7 Gag-pol polyprotein1.3e-6799.26Show/hide
Query:  MGSKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEA
        MGSKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEA
Subjt:  MGSKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEA

Query:  LKMAEEETIEEFNVRVLDLANEPFTLREKISDSKMV
        LKMA+EETIEEFNVRVLDLANEPFTLREKISDSKMV
Subjt:  LKMAEEETIEEFNVRVLDLANEPFTLREKISDSKMV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGTAAGTGTTGGAAGGTTGTACTCATTGGATGGGAACTGTCATCTGCCAAGGATACAACTAGTAAGGATGTTTTGAAACCTAAAATCACTTGGACTAAGGAAGA
GGATGAAACATCTCTTGGGAACTCATGTGCATTAAATGCTTTGTTTAATAGGGTAAGCCAAAATGTTTTTAAAATAAACAATACCTATACTTCTGCTAAAGAAGCATGGA
ACATCTTGGAGGTTGCCTACGAAGGGACCTCAAAAATCAAAGTATCTAAGCTTCAGATTCTGACCTTAAGGTTTGAAGCTCTCAAGATGGCTGAAGAAGAAACTATTGAA
GAATTTAATGTTCGTGTACTGGATTTGGCAAATGAGCCATTTACTCTTAGAGAAAAAATTTCTGACTCAAAGATGGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGTAAGTGTTGGAAGGTTGTACTCATTGGATGGGAACTGTCATCTGCCAAGGATACAACTAGTAAGGATGTTTTGAAACCTAAAATCACTTGGACTAAGGAAGA
GGATGAAACATCTCTTGGGAACTCATGTGCATTAAATGCTTTGTTTAATAGGGTAAGCCAAAATGTTTTTAAAATAAACAATACCTATACTTCTGCTAAAGAAGCATGGA
ACATCTTGGAGGTTGCCTACGAAGGGACCTCAAAAATCAAAGTATCTAAGCTTCAGATTCTGACCTTAAGGTTTGAAGCTCTCAAGATGGCTGAAGAAGAAACTATTGAA
GAATTTAATGTTCGTGTACTGGATTTGGCAAATGAGCCATTTACTCTTAGAGAAAAAATTTCTGACTCAAAGATGGTTTAG
Protein sequenceShow/hide protein sequence
MGSKCWKVVLIGWELSSAKDTTSKDVLKPKITWTKEEDETSLGNSCALNALFNRVSQNVFKINNTYTSAKEAWNILEVAYEGTSKIKVSKLQILTLRFEALKMAEEETIE
EFNVRVLDLANEPFTLREKISDSKMV