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IVF0027005 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0027005
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description50S ribosomal protein L20, chloroplastic
Genome locationtig00000662:84282..84689
RNA-Seq ExpressionIVF0027005
SyntenyIVF0027005
Gene Ontology termsGO:0000027 - ribosomal large subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR005813 - Ribosomal protein L20
IPR035566 - Ribosomal protein L20, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
YP_004841806.1 ribosomal protein L20 [Cucumis melo subsp. melo]3.56e-86100Show/hide
Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
        AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
YP_009317409.1 ribosomal protein L20 [Coccinia grandis]6.03e-72100Show/hide
Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK
YP_009439914.1 ribosomal protein L20 [Gynostemma caulopterum]1.19e-7591.11Show/hide
Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRG+ KRNFR LWIARINAVIR NKV YSYSRFIHNLYK+QLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
        AILNRNCLYM+SNEI K +D KESSGM KMEFSGE
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
YP_009468884.1 ribosomal protein L20 [Gynostemma compressum]2.79e-7489.63Show/hide
Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRL RTITQQKIRALASAY+DRG+ KRNFR LWIARINAVIR NKV YSYSRFIHNLYK+QLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
        AILNRNCLYM+SNEI K +D KESSGM KMEFSGE
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
YP_009752182.1 ribosomal protein L20 [Linnaeosicyos amara]2.63e-7693.33Show/hide
Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDR RQKRNFR+LWI RINAVIR NKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
        AILNRNCLYMISNEI   ED +ESSGMLKMEFSGE
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
TrEMBL top hitse value%identityAlignment
A0A1S4EU28 50S ribosomal protein L20, chloroplastic3.6e-65100Show/hide
Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
        AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
A0A249RY24 50S ribosomal protein L20, chloroplastic3.6e-65100Show/hide
Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
        AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
A0A249RZ58 50S ribosomal protein L20, chloroplastic3.6e-65100Show/hide
Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
        AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
A0A249RZK5 50S ribosomal protein L20, chloroplastic3.6e-65100Show/hide
Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
        AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
A0A286NG26 50S ribosomal protein L20, chloroplastic3.6e-65100Show/hide
Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
        AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
SwissProt top hitse value%identityAlignment
Q33C09 50S ribosomal protein L20, chloroplastic4.1e-5083.59Show/hide
Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL SA+RDR R+KR+FR+LWI RINAVIR   V YSYSR IH+LYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGML
        AI NRNCLYMISNEIIK  D KES+ ++
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGML
Q3C1K6 50S ribosomal protein L20, chloroplastic4.1e-5083.59Show/hide
Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL SA+RDR R+KR+FR+LWI RINAVIR   V YSYSR IH+LYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGML
        AI NRNCLYMISNEIIK  D KES+ ++
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGML
Q4VZJ4 50S ribosomal protein L20, chloroplastic5.0e-5699.15Show/hide
Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSN VDYSYSRFIHNLYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        AILNRNCLYMISNEIIK
Subjt:  AILNRNCLYMISNEIIK
Q68RY3 50S ribosomal protein L20, chloroplastic1.1e-5082.81Show/hide
Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRI+RGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL S++RDR RQKRNFR+LWI RINAVIR   V YSYSR IH+LYK+QLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGML
        AI N+NCLYMISNEIIK  D KES+G++
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGML
Q7FNS5 50S ribosomal protein L20, chloroplastic4.1e-5083.59Show/hide
Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL SA+RDR R+KR+FR+LWI RINAVIR   V YSYSR IH+LYKRQLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIKYEDCKESSGML
        AI NRNCLYMISNEIIK  D KES+ ++
Subjt:  AILNRNCLYMISNEIIKYEDCKESSGML
Arabidopsis top hitse value%identityAlignment
AT1G16740.1 Ribosomal protein L204.7e-0939.33Show/hide
Query:  RTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAI
        + +I   A  FRG      R   ++  +AL  +YRDR  +KR  R LWI RINA  R + V  +Y  FIH L K  + LNRK+L+++++
Subjt:  RTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAI
ATCG00660.1 ribosomal protein L201.1e-4580.34Show/hide
Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI
        MTRIKRGYIARRRRTK+RLFASSFRGAHSRLTRT+TQQ+IRAL SA+RDRG++KR+FR+LWI RINAVI    V YSY+ FIHNLYK+QLLLNRKILAQI
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQI

Query:  AILNRNCLYMISNEIIK
        A+LNR+CLY ISN+I K
Subjt:  AILNRNCLYMISNEIIK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCA
ACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGG
TAGACTACAGTTATAGTAGATTCATACACAATCTCTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCGATATTAAATAGAAATTGTCTTTATATG
ATTTCCAATGAGATCATAAAATACGAAGATTGCAAAGAATCCAGCGGAATGCTTAAAATGGAGTTCTCTGGAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGACTAGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCA
ACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGG
TAGACTACAGTTATAGTAGATTCATACACAATCTCTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCGATATTAAATAGAAATTGTCTTTATATG
ATTTCCAATGAGATCATAAAATACGAAGATTGCAAAGAATCCAGCGGAATGCTTAAAATGGAGTTCTCTGGAGAATGA
Protein sequenceShow/hide protein sequence
MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYM
ISNEIIKYEDCKESSGMLKMEFSGE