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IVF0027021 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0027021
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionVQ domain-containing protein
Genome locationchr04:29062734..29063219
RNA-Seq ExpressionIVF0027021
SyntenyIVF0027021
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR008889 - VQ
IPR039607 - VQ motif-containing protein 8/17/18/20/21/25


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043778.1 protein MKS1-like [Cucumis melo var. makuwa]7.36e-69100Show/hide
Query:  MMMNFTAARNQSQLRGPRPPPLTVNKSSTNIFKKSTKNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEF
        MMMNFTAARNQSQLRGPRPPPLTVNKSSTNIFKKSTKNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEF
Subjt:  MMMNFTAARNQSQLRGPRPPPLTVNKSSTNIFKKSTKNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEF

Query:  ASACNCIPS
        ASACNCIPS
Subjt:  ASACNCIPS

KAG6596645.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]4.25e-4176.15Show/hide
Query:  TAARNQS--QLRGPRPPPLTVNKSSTNIFKKSTKNPNQR---NRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEF
        +AARNQ   +LRGPRPPPLTVNKSST IFKKST   N R   NRR P+I+YLRSPKIIHVRPEEFKSFVQRLTGN SSVAVVA+S SA+GMI DH GE  
Subjt:  TAARNQS--QLRGPRPPPLTVNKSSTNIFKKSTKNPNQR---NRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEF

Query:  ASACNCIPS
         SACN IPS
Subjt:  ASACNCIPS

KGN59247.1 hypothetical protein Csa_002000 [Cucumis sativus]9.34e-5080.87Show/hide
Query:  MMMNFTAARNQSQLRGPRPPPLTVNKSS-TNIFKKSTKN-----PNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITD
        MM+   AARN SQLRGPRPPPLTVNKSS TNI KKSTKN      NQR+RRSPIIIYLRSPK+IHVRPEEFKSFVQRLTGNRSSVAVVASSCSA+GMI D
Subjt:  MMMNFTAARNQSQLRGPRPPPLTVNKSS-TNIFKKSTKN-----PNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITD

Query:  HSGEEFASACNCIPS
           EEF S CNCIPS
Subjt:  HSGEEFASACNCIPS

XP_008443599.1 PREDICTED: protein MKS1-like [Cucumis melo]2.32e-67100Show/hide
Query:  MNFTAARNQSQLRGPRPPPLTVNKSSTNIFKKSTKNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFAS
        MNFTAARNQSQLRGPRPPPLTVNKSSTNIFKKSTKNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFAS
Subjt:  MNFTAARNQSQLRGPRPPPLTVNKSSTNIFKKSTKNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFAS

Query:  ACNCIPS
        ACNCIPS
Subjt:  ACNCIPS

XP_031267805.1 VQ motif-containing protein 8, chloroplastic-like [Pistacia vera]3.69e-1747.42Show/hide
Query:  MMNFTAARNQSQLRGPRPPPLTVNKSSTNIFKKSTKNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGE
        MMN +A    S+L+GPRP  L V+ SS+ I KK   N N +  +SP++IYL SPKIIHVRPEEF  FVQRLTG +++    ++S S+   + ++  E
Subjt:  MMNFTAARNQSQLRGPRPPPLTVNKSSTNIFKKSTKNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGE

TrEMBL top hitse value%identityAlignment
A0A0A0LEW5 VQ domain-containing protein8.7e-3880.87Show/hide
Query:  MMMNFTAARNQSQLRGPRPPPLTVNK-SSTNIFKKSTKN-----PNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITD
        MM+   AARN SQLRGPRPPPLTVNK SSTNI KKSTKN      NQR+RRSPIIIYLRSPK+IHVRPEEFKSFVQRLTGNRSSVAVVASSCSA+GMI D
Subjt:  MMMNFTAARNQSQLRGPRPPPLTVNK-SSTNIFKKSTKN-----PNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITD

Query:  HSGEEFASACNCIPS
           EEF S CNCIPS
Subjt:  HSGEEFASACNCIPS

A0A1S3B975 protein MKS1-like4.0e-51100Show/hide
Query:  MNFTAARNQSQLRGPRPPPLTVNKSSTNIFKKSTKNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFAS
        MNFTAARNQSQLRGPRPPPLTVNKSSTNIFKKSTKNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFAS
Subjt:  MNFTAARNQSQLRGPRPPPLTVNKSSTNIFKKSTKNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFAS

Query:  ACNCIPS
        ACNCIPS
Subjt:  ACNCIPS

A0A2N9GB07 VQ domain-containing protein6.7e-1456.47Show/hide
Query:  MNFTAARNQSQLRGPRPPPLTVNKSSTNIFKKSTKNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCS
        M+    +   QL+GPRP PLTVNKSST I K+   N   R R SP+IIYL+SPK+IHVRPEEF   VQ+LTGN++   V A S S
Subjt:  MNFTAARNQSQLRGPRPPPLTVNKSSTNIFKKSTKNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCS

A0A5D3DP92 Protein MKS1-like2.8e-52100Show/hide
Query:  MMMNFTAARNQSQLRGPRPPPLTVNKSSTNIFKKSTKNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEF
        MMMNFTAARNQSQLRGPRPPPLTVNKSSTNIFKKSTKNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEF
Subjt:  MMMNFTAARNQSQLRGPRPPPLTVNKSSTNIFKKSTKNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEF

Query:  ASACNCIPS
        ASACNCIPS
Subjt:  ASACNCIPS

A0A5J4ZMH6 VQ domain-containing protein1.3e-1250.57Show/hide
Query:  QLRGPRPPPLTVNKSSTNIFKKSTKNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEE
        QL GPRP PL VNKSS+ I     K P     R P+++YL+SPKIIHV P EF   VQRLTGN+ S +V++ S  + G+  D  G E
Subjt:  QLRGPRPPPLTVNKSSTNIFKKSTKNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEE

SwissProt top hitse value%identityAlignment
F4HWF9 Nuclear speckle RNA-binding protein B4.7e-0434.02Show/hide
Query:  GPRPPPLTVNKSSTNIFKKSTKNP----------------NQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHS
        GP+P PL V   S  I KK    P                  R    P+ IY  +P+IIH  P  F + VQRLTG  S+    +SS S++    D S
Subjt:  GPRPPPLTVNKSSTNIFKKSTKNP----------------NQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHS

Q8LGD5 Protein MKS15.9e-0743.04Show/hide
Query:  RNQSQLRGPRPPPLTVNKSSTNIFK--KSTKNPNQRNR------RSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSV
        + Q Q+ GPRP PL+V+K S  I K  K    P  R++      R P++IY  SPK++H    EF + VQRLTG  S V
Subjt:  RNQSQLRGPRPPPLTVNKSSTNIFK--KSTKNPNQRNR------RSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSV

Q9CA36 VQ motif-containing protein 8, chloroplastic6.5e-0640Show/hide
Query:  SQLRGPRPPPLTVNKSSTNIFKKST--KNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSAS
        +++ G RP  L +   S  I K S+    P    R SP+IIY  SPK+IH R E+F + VQRLTG    +    S  S+S
Subjt:  SQLRGPRPPPLTVNKSSTNIFKKST--KNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSAS

Q9LS54 VQ motif-containing protein 209.4e-0543.33Show/hide
Query:  PRPPPLTVNKSSTNIFKKSTKN--PNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTG
        P PP L VNK S  I K  + +   +    R P+IIY  +P+IIH  P++F + VQ+LTG
Subjt:  PRPPPLTVNKSSTNIFKKSTKN--PNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTG

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding3.3e-0534.02Show/hide
Query:  GPRPPPLTVNKSSTNIFKKSTKNP----------------NQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHS
        GP+P PL V   S  I KK    P                  R    P+ IY  +P+IIH  P  F + VQRLTG  S+    +SS S++    D S
Subjt:  GPRPPPLTVNKSSTNIFKKSTKNP----------------NQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHS

AT1G21326.1 VQ motif-containing protein3.9e-0638.89Show/hide
Query:  GPRPPPLTVNKSSTNIFKKSTKNP----------------NQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSAS
        GPRP PL V   S  I KK    P                  R    P+IIY  SP+IIH  P  F + VQRLTG ++S +  +SS S+S
Subjt:  GPRPPPLTVNKSSTNIFKKSTKNP----------------NQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSAS

AT1G68450.1 VQ motif-containing protein4.6e-0740Show/hide
Query:  SQLRGPRPPPLTVNKSSTNIFKKST--KNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSAS
        +++ G RP  L +   S  I K S+    P    R SP+IIY  SPK+IH R E+F + VQRLTG    +    S  S+S
Subjt:  SQLRGPRPPPLTVNKSSTNIFKKST--KNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSAS

AT3G18360.1 VQ motif-containing protein6.7e-0643.33Show/hide
Query:  PRPPPLTVNKSSTNIFKKSTKN--PNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTG
        P PP L VNK S  I K  + +   +    R P+IIY  +P+IIH  P++F + VQ+LTG
Subjt:  PRPPPLTVNKSSTNIFKKSTKN--PNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTG

AT3G18690.1 MAP kinase substrate 14.2e-0843.04Show/hide
Query:  RNQSQLRGPRPPPLTVNKSSTNIFK--KSTKNPNQRNR------RSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSV
        + Q Q+ GPRP PL+V+K S  I K  K    P  R++      R P++IY  SPK++H    EF + VQRLTG  S V
Subjt:  RNQSQLRGPRPPPLTVNKSSTNIFK--KSTKNPNQRNR------RSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATGAATTTCACCGCCGCAAGGAATCAATCGCAATTGCGAGGGCCAAGGCCGCCGCCGTTGACGGTGAACAAATCCTCCACTAACATTTTCAAGAAATCGACGAA
GAATCCTAATCAACGCAATCGCCGTTCTCCGATAATCATTTACCTCCGATCGCCGAAGATCATCCATGTTCGGCCTGAGGAGTTCAAAAGCTTCGTTCAACGTCTCACCG
GAAATCGATCCTCTGTAGCCGTCGTCGCGTCGTCCTGTTCTGCTAGTGGAATGATTACGGATCATTCTGGTGAGGAATTTGCATCCGCGTGCAATTGCATTCCGTCGTAG
mRNA sequenceShow/hide mRNA sequence
AAATTATATTATATAACGATCCAAACAGATAAGAAATCCATCCATCGATTATCATTTACCATTATATATAAATCCCAACCTCTTCCGTTCCTAATTCAAGAAGAAGACTG
AAAAATCTCACCAATTTTCGAAGCCGCAGCGGGAAATTGAAGAAAAATGATGATGAATTTCACCGCCGCAAGGAATCAATCGCAATTGCGAGGGCCAAGGCCGCCGCCGT
TGACGGTGAACAAATCCTCCACTAACATTTTCAAGAAATCGACGAAGAATCCTAATCAACGCAATCGCCGTTCTCCGATAATCATTTACCTCCGATCGCCGAAGATCATC
CATGTTCGGCCTGAGGAGTTCAAAAGCTTCGTTCAACGTCTCACCGGAAATCGATCCTCTGTAGCCGTCGTCGCGTCGTCCTGTTCTGCTAGTGGAATGATTACGGATCA
TTCTGGTGAGGAATTTGCATCCGCGTGCAATTGCATTCCGTCGTAG
Protein sequenceShow/hide protein sequence
MMMNFTAARNQSQLRGPRPPPLTVNKSSTNIFKKSTKNPNQRNRRSPIIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFASACNCIPS