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IVF0027037 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0027037
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr08:28264206..28273498
RNA-Seq ExpressionIVF0027037
SyntenyIVF0027037
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047411.1 gag/pol protein [Cucumis melo var. makuwa]3.78e-2661Show/hide
Query:  KMRTRMPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQRVVNARPMLETIE
        KMR RMP TQFF+ GVK+ P+TVSLFC+       NFGTHT     YI  IVPH F Q I ++ASS L+GEL C+PKR KRWPMLFQRV NA  + ET E
Subjt:  KMRTRMPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQRVVNARPMLETIE

KAA0047414.1 gag/pol protein [Cucumis melo var. makuwa]7.37e-1148.96Show/hide
Query:  TSGERSSHKMRTRMPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQR
        TSG R   K+R RM +TQFF  GVK  P+  SLFC+       +F THT   L YIP IVPH FSQ  G EAS  L+GEL  N +    W  +F R
Subjt:  TSGERSSHKMRTRMPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQR

KAA0051943.1 hypothetical protein E6C27_scaffold60G004060 [Cucumis melo var. makuwa]2.44e-1666.67Show/hide
Query:  NFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQRVVNARPMLETIEN
        +FGTHT     YIP IVP TFSQ IG +ASS L+ EL CNPKR KRWP+ FQRV NAR +LET EN
Subjt:  NFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQRVVNARPMLETIEN

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]9.96e-1859.52Show/hide
Query:  MPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQRV
        MPQTQFF+ G+KSG +TVSLFC+       +F TH +    YIP IVPH FSQ I QE S  L GEL CN +R KRW MLFQRV
Subjt:  MPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQRV

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]3.61e-2760.4Show/hide
Query:  KMRTRMPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQRVVNARPMLETIE
        K+RTRMP TQFFYLGVK+GP+ VS FC+       +F THT+    YIP IV H+FSQ IG+EASS  KGE  CNPKR K WP+LFQRV NARP+   I+
Subjt:  KMRTRMPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQRVVNARPMLETIE

Query:  N
        +
Subjt:  N

TrEMBL top hitse value%identityAlignment
A0A5A7U7P6 Uncharacterized protein2.0e-1366.67Show/hide
Query:  NFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQRVVNARPMLETIEN
        +FGTHT     YIP IVP TFSQ IG +A SSL+ EL CNPKR KRWP+ FQRV NAR +LET EN
Subjt:  NFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQRVVNARPMLETIEN

A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed8.0e-2360.4Show/hide
Query:  KMRTRMPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQRVVNARPMLETIE
        K+RTRMP TQFFYLGVK+GP+ VS FC+       +F THT+    YIP IV H+FSQ IG+EA SS KGE  CNPKR K WP+LFQRV NARP+   I+
Subjt:  KMRTRMPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQRVVNARPMLETIE

Query:  N
        +
Subjt:  N

A0A5A7VGQ5 Uncharacterized protein1.4e-1459.52Show/hide
Query:  MPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQRV
        MPQTQFF+ G+KSG +TVSLFC+       +F TH +    YIP IVPH FSQ I QE  S L GEL CN +R KRW MLFQRV
Subjt:  MPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQRV

A0A5D3CUK8 Gag/pol protein6.8e-2261Show/hide
Query:  KMRTRMPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQRVVNARPMLETIE
        KMR RMP TQFF+ GVK+ P+TVSLFC+       NFGTHT     YI  IVPH F Q I ++A SSL+GEL C+PKR KRWPMLFQRV NA  + ET E
Subjt:  KMRTRMPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQRVVNARPMLETIE

A0A5D3CV18 Gag/pol protein1.1e-0848.96Show/hide
Query:  TSGERSSHKMRTRMPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQR
        TSG R   K+R RM +TQFF  GVK  P+  SLFC+       +F THT   L YIP IVPH FSQ  G EA S L+GEL  N +    W  +F R
Subjt:  TSGERSSHKMRTRMPQTQFFYLGVKSGPSTVSLFCIF-----HNFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAATGTTATTCCAACGAGTGGTGAACGCTCGTCCCATAAAATGCGAACGAGAATGCCTCAGACTCAGTTTTTCTATCTCGGGGTAAAAAGCGGTCCTTCAACGGT
TTCTTTGTTTTGTATTTTTCATAACTTCGGGACTCATACTGTGATGATGTTAGACTACATTCCTTGCATCGTACCTCACACATTTTCTCAATGTATAGGTCAGGAAGCCA
GCTCCTCGTTGAAGGGAGAACTAAGCTGTAACCCGAAACGATGGAAAAGATGGCCAATGCTCTTCCAACGAGTGGTAAATGCTCGTCCGATGTTAGAAACCATTGAAAAT
TAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAATGTTATTCCAACGAGTGGTGAACGCTCGTCCCATAAAATGCGAACGAGAATGCCTCAGACTCAGTTTTTCTATCTCGGGGTAAAAAGCGGTCCTTCAACGGT
TTCTTTGTTTTGTATTTTTCATAACTTCGGGACTCATACTGTGATGATGTTAGACTACATTCCTTGCATCGTACCTCACACATTTTCTCAATGTATAGGTCAGGAAGCCA
GCTCCTCGTTGAAGGGAGAACTAAGCTGTAACCCGAAACGATGGAAAAGATGGCCAATGCTCTTCCAACGAGTGGTAAATGCTCGTCCGATGTTAGAAACCATTGAAAAT
TAA
Protein sequenceShow/hide protein sequence
MANVIPTSGERSSHKMRTRMPQTQFFYLGVKSGPSTVSLFCIFHNFGTHTVMMLDYIPCIVPHTFSQCIGQEASSSLKGELSCNPKRWKRWPMLFQRVVNARPMLETIEN