CuGenDBv2

Gene ID	Lag0000123
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Arp2/3 complex 34 kDa subunit
Genome location	chr4:86121..88331
RNA-Seq Expression	Lag0000123
Synteny	Lag0000123
Gene Ontology terms	GO:0030833 - regulation of actin filament polymerization (biological process) GO:0034314 - Arp2/3 complex-mediated actin nucleation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005885 - Arp2/3 protein complex (cellular component) GO:0005200 - structural constituent of cytoskeleton (molecular function) GO:0051015 - actin filament binding (molecular function)
InterPro domains	IPR034666 - Arp2/3 complex subunit 2/4

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0052409.1 actin-related protein 2/3 complex subunit 2A [Cucumis melo var. makuwa]

1.1e-29

93.24

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Query:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR
        SLEKAVEVDYNWVEFDDV YHVQ SMKN HLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYG+LVQILDP R
Subjt:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR

KAG6602686.1 Actin-related protein 2/3 complex subunit 2A, partial [Cucurbita argyrosperma subsp. sororia]

2.0e-29

93.24

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Query:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR
        +LEKAVEVDYNWVEFDDV YHVQ SMKN HLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDP R
Subjt:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR

KAG7033372.1 Actin-related protein 2/3 complex subunit 2A [Cucurbita argyrosperma subsp. argyrosperma]

2.0e-29

93.24

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Query:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR
        +LEKAVEVDYNWVEFDDV YHVQ SMKN HLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDP R
Subjt:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR

XP_022990855.1 actin-related protein 2/3 complex subunit 2A [Cucurbita maxima]

2.0e-29

93.24

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Query:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR
        +LEKAVEVDYNWVEFDDV YHVQ SMKN HLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDP R
Subjt:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR

XP_023544060.1 actin-related protein 2/3 complex subunit 2A [Cucurbita pepo subsp. pepo]

2.0e-29

93.24

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Query:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR
        +LEKAVEVDYNWVEFDDV YHVQ SMKN HLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDP R
Subjt:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KIL8 Arp2/3 complex 34 kDa subunit

1.2e-29

91.89

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Query:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR
        +LEKAVEVDYNWVEFDDV YHVQ SMKN HLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYG+LVQILDP R
Subjt:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR

A0A1S3AYP0 Arp2/3 complex 34 kDa subunit

1.2e-29

91.89

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Query:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR
        +LEKAVEVDYNWVEFDDV YHVQ SMKN HLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYG+LVQILDP R
Subjt:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR

A0A5A7UG04 Arp2/3 complex 34 kDa subunit

5.5e-30

93.24

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Query:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR
        SLEKAVEVDYNWVEFDDV YHVQ SMKN HLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYG+LVQILDP R
Subjt:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR

A0A6J1HA86 Arp2/3 complex 34 kDa subunit

9.5e-30

93.24

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Query:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR
        +LEKAVEVDYNWVEFDDV YHVQ SMKN HLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDP R
Subjt:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR

A0A6J1JR90 Arp2/3 complex 34 kDa subunit

9.5e-30

93.24

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Query:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR
        +LEKAVEVDYNWVEFDDV YHVQ SMKN HLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDP R
Subjt:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR

SwissProt top hits

e value

%identity

Alignment

Q8LGI3 Actin-related protein 2/3 complex subunit 2A

5.5e-19

63.51

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Query:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR
        +L+KAVE+DY W+EFDDV YHVQ +MKN +L LLSVSLP P  + +   GLP GAIEAIK  YG   QILDP R
Subjt:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR

Arabidopsis top hits

e value

%identity

Alignment

AT1G30825.1 Arp2/3 complex, 34 kD subunit p34-Arc

3.9e-20

63.51

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Query:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR
        +L+KAVE+DY W+EFDDV YHVQ +MKN +L LLSVSLP P  + +   GLP GAIEAIK  YG   QILDP R
Subjt:  SLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRR

Sequences

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CDS sequence

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ATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTTGATGTCCACCTCCACTCGACCTTCAGTTTTCCAAAGACTAAGTGTCTCGACATCGAAGAAAAGTCGACCTTC
AACATCTATTTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGCGGCGAGAAGCTTCAAA
GTAGCATCCCATCACATATGAAGAGGAAGTTCTCCGTTCTCATAAATACAGAAGGTTCCTTGAAGTCTCTAATAATCATTGACCGAGATGGTACAATCAGATTGTCTTCT
TCGAAGGATTCCTTGGTGTGGTTGCCTAAATTCAGTCTTGAAAAAGCAGTGGAAGTGGATTACAACTGGGTGGAATTTGATGATGTGTGTTACCATGTCCAGGCCTCAAT
GAAGAACACCCATCTCTTCCTGCTATCCGTATCATTGCCCATCCCTTCTGCAGATACTGTTTTTTGTGGCGGGCTTCCATCTGGAGCTATAGAAGCTATTAAAGCTGCAT
ATGGCGTGCTTGTACAGATTCTTGATCCTCGAAGAGTGGTTTTAATCTCACATTAA

mRNA sequence

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Protein sequence

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MSMVATEEENQCLMSTSTRPSVFQRLSVSTSKKSRPSTSIFDRLKVTNDQPKRKMDNLELKLFDEVNSGEKLQSSIPSHMKRKFSVLINTEGSLKSLIIIDRDGTIRLSS
SKDSLVWLPKFSLEKAVEVDYNWVEFDDVCYHVQASMKNTHLFLLSVSLPIPSADTVFCGGLPSGAIEAIKAAYGVLVQILDPRRVVLISH

Lag0000123 (gene) of Sponge gourd (AG-4) v1 genome