CuGenDBv2

Gene ID	Lag0000145
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrotransposon protein
Genome location	chr4:486594..487141
RNA-Seq Expression	Lag0000145
Synteny	Lag0000145
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	IPR024752 - Myb/SANT-like domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031555.1 retrotransposon protein [Cucumis melo var. makuwa]

2.2e-41

53.52

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Query:  ASASKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCI
        +++++  +H+W  +E+  LV+CL+ LV +GGW++DNGTFRPGY  QL RM+ E+L GC +     I+ R+  LK+ + AIAEM GPACSGFGWNDE KCI
Subjt:  ASASKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCI

Query:  EAEKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG
         AEKE+FD  V  HP AKGL N PFP+++EL  VF +D   G
Subjt:  EAEKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG

KAA0032766.1 retrotransposon protein [Cucumis melo var. makuwa]

2.2e-41

53.52

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Query:  ASASKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCI
        +++++  +H+W  +E+  LV+CL+ LV +GGW++DNGTFRPGY  QL RM+ E+L GC +     I+ R+  LK+ + AIAEM GPACSGFGWNDE KCI
Subjt:  ASASKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCI

Query:  EAEKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG
         AEKE+FD  V  HP AKGL N PFP+++EL  VF +D   G
Subjt:  EAEKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG

KAA0038975.1 retrotransposon protein [Cucumis melo var. makuwa]

2.2e-41

53.52

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Query:  ASASKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCI
        +++++  +H+W  +E+  LV+CL+ LV +GGW++DNGTFRPGY  QL RM+ E+L GC +     I+ R+  LK+ + AIAEM GPACSGFGWNDE KCI
Subjt:  ASASKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCI

Query:  EAEKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG
         AEKE+FD  V  HP AKGL N PFP+++EL  VF +D   G
Subjt:  EAEKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG

KAA0058882.1 retrotransposon protein [Cucumis melo var. makuwa]

1.3e-41

53.52

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Query:  ASASKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCI
        +++++  +H+WM +E+  LV+CL+ LV +GGW++DNGTFRPGY  QL RM+ ++L GC +     I+ R+  LK+ + AIAEM GPACSGFGWNDE KCI
Subjt:  ASASKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCI

Query:  EAEKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG
         AEKE+FD  V  HP AKGL N PFP+++EL  VF +D   G
Subjt:  EAEKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG

TYJ96194.1 retrotransposon protein [Cucumis melo var. makuwa]

2.2e-41

53.52

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Query:  ASASKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCI
        +++++  +H+W  +E+  LV+CL+ LV +GGW++DNGTFRPGY  QL RM+ E+L GC +     I+ R+  LK+ + AIAEM GPACSGFGWNDE KCI
Subjt:  ASASKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCI

Query:  EAEKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG
         AEKE+FD  V  HP AKGL N PFP+++EL  VF +D   G
Subjt:  EAEKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TRV1 Retrotransposon protein

1.1e-41

53.52

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Query:  ASASKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCI
        +++++  +H+W  +E+  LV+CL+ LV +GGW++DNGTFRPGY  QL RM+ E+L GC +     I+ R+  LK+ + AIAEM GPACSGFGWNDE KCI
Subjt:  ASASKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCI

Query:  EAEKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG
         AEKE+FD  V  HP AKGL N PFP+++EL  VF +D   G
Subjt:  EAEKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG

A0A5A7USM3 Retrotransposon protein

6.2e-42

53.52

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Query:  ASASKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCI
        +++++  +H+WM +E+  LV+CL+ LV +GGW++DNGTFRPGY  QL RM+ ++L GC +     I+ R+  LK+ + AIAEM GPACSGFGWNDE KCI
Subjt:  ASASKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCI

Query:  EAEKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG
         AEKE+FD  V  HP AKGL N PFP+++EL  VF +D   G
Subjt:  EAEKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG

A0A5D3BCN9 Retrotransposon protein

1.1e-41

53.52

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Query:  ASASKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCI
        +++++  +H+W  +E+  LV+CL+ LV +GGW++DNGTFRPGY  QL RM+ E+L GC +     I+ R+  LK+ + AIAEM GPACSGFGWNDE KCI
Subjt:  ASASKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCI

Query:  EAEKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG
         AEKE+FD  V  HP AKGL N PFP+++EL  VF +D   G
Subjt:  EAEKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG

A0A5D3CWL2 Retrotransposon protein

1.1e-41

53.52

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Query:  ASASKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCI
        +++++  +H+W  +E+  LV+CL+ LV +GGW++DNGTFRPGY  QL RM+ E+L GC +     I+ R+  LK+ + AIAEM GPACSGFGWNDE KCI
Subjt:  ASASKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCI

Query:  EAEKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG
         AEKE+FD  V  HP AKGL N PFP+++EL  VF +D   G
Subjt:  EAEKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG

A0A5D3DCZ1 Retrotransposon protein

1.1e-41

53.52

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Query:  ASASKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCI
        +++++  +H+W  +E+  LV+CL+ LV +GGW++DNGTFRPGY  QL RM+ E+L GC +     I+ R+  LK+ + AIAEM GPACSGFGWNDE KCI
Subjt:  ASASKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCI

Query:  EAEKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG
         AEKE+FD  V  HP AKGL N PFP+++EL  VF +D   G
Subjt:  EAEKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G24960.2 unknown protein

4.1e-06

22.14

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Query:  SKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNI-ESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCIEA
        S + +  W P  D  L+  L+  V  G       TF     N++      +    +   N ++ ++R   L++ Y  I  ++    +GF W+  R  + A
Subjt:  SKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNI-ESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCIEA

Query:  EKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG
        + +I++  ++ HP+A+  R    P +  L  +F K+ + G
Subjt:  EKEIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRG

AT5G27260.1 unknown protein

2.1e-10

29.08

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Query:  KKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCIEAEK
        K + + W P+E ++LVQ L+  +    WR  NGT       +   M +     C      +  SR+  LK QY +  ++     SGFGW+   K   A  
Subjt:  KKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCIEAEK

Query:  EIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRGVRA
        E++   ++ HP  K LR   F +F+EL ++F +    G  A
Subjt:  EIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRGVRA

Sequences

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CDS sequence

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ATGCAAATGGTCACGTCTGCCTCAGCTTCAAAGAAAGAGAAACACATTTGGATGCCGAAGGAAGACGAAATGCTAGTGCAATGCCTACTTCACCTAGTCCGAGTGGGGGG
ATGGCGTGCAGACAATGGGACGTTTCGACCTGGTTACCAAAATCAGCTTGGAAGGATGATAAAAGAAAGATTATCTGGATGCAACATAGTCGTGAACCCGAACATTGAAT
CCAGAGTGAGTCTGCTAAAAAAACAGTACATGGCGATAGCTGAGATGATGGGACCAGCCTGTAGTGGATTTGGTTGGAATGATGAGAGAAAATGCATAGAGGCGGAGAAG
GAGATATTCGATTTGCGGGTCGAGGGACATCCACAGGCCAAGGGCCTCCGTAACTGGCCATTCCCATGGTTCAATGAGTTGGCGCTCGTTTTCAGGAAGGACAACACTAG
AGGAGTGAGAGCCTGA

mRNA sequence

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Protein sequence

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MQMVTSASASKKEKHIWMPKEDEMLVQCLLHLVRVGGWRADNGTFRPGYQNQLGRMIKERLSGCNIVVNPNIESRVSLLKKQYMAIAEMMGPACSGFGWNDERKCIEAEK
EIFDLRVEGHPQAKGLRNWPFPWFNELALVFRKDNTRGVRA

Lag0000145 (gene) of Sponge gourd (AG-4) v1 genome