; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000147 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000147
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr4:511232..512008
RNA-Seq ExpressionLag0000147
SyntenyLag0000147
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]2.6e-5047.46Show/hide
Query:  MKVEVSQKFKVSTFKPYDGKKDPIQHIDTYRNWVDFHGVLDAIRCRAFSFTLTGSTKQWFQRLKRRSINSFNELARAFLSQFRGAREQCKCHINLLTVKQ
        MK +V  KFK+   K YDG  DPI H+D Y  W D +G+ +AIRCR FSFTLTGST+ WFQ+LKR+SI+SF ELARAF++QF G   + +    LLT+KQ
Subjt:  MKVEVSQKFKVSTFKPYDGKKDPIQHIDTYRNWVDFHGVLDAIRCRAFSFTLTGSTKQWFQRLKRRSINSFNELARAFLSQFRGAREQCKCHINLLTVKQ

Query:  QPGESLCDYITRFNELALQVEGYSEGAALVAIIAGLEDERLLNSIGKSQPRIYAEFVSKAQKYMSAGNCFDRRGQSTRGILQSTETKRNKKLRTDKGGQ-
        +  ESL DY+ RFN+  LQVEG ++   L+  I+G++DE+L+ S GK     ++E  S+AQ YMS G     + +  +G      TKR +      G + 
Subjt:  QPGESLCDYITRFNELALQVEGYSEGAALVAIIAGLEDERLLNSIGKSQPRIYAEFVSKAQKYMSAGNCFDRRGQSTRGILQSTETKRNKKLRTDKGGQ-

Query:  GRVDPSRGRPNRGDYLRKFEKYTPTSIPQEQILTEI
         R D  +GR  + D  RKFEKYTPT++P EQ+L EI
Subjt:  GRVDPSRGRPNRGDYLRKFEKYTPTSIPQEQILTEI

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]9.8e-4249.71Show/hide
Query:  DEVMKVEVSQKFKVSTFKPYDGKKDPIQHIDTYRNWVDFHGVLDAIRCRAFSFTLTGSTKQWFQRLKRRSINSFNELARAFLSQFRGAREQCKCHINLLT
        +E+MKV+V  KFK+ T K +DG  D + H+D YR W+D +GV +A++CR FS TL+GS + WF++LKR SI+SF  LA+AF++QF G R + +    LLT
Subjt:  DEVMKVEVSQKFKVSTFKPYDGKKDPIQHIDTYRNWVDFHGVLDAIRCRAFSFTLTGSTKQWFQRLKRRSINSFNELARAFLSQFRGAREQCKCHINLLT

Query:  VKQQPGESLCDYITRFNELALQVEGYSEGAALVAIIAGLEDERLLNSIGKSQPRIYAEFVSKAQKYMSAGNCF
        +KQ+  ESL DY+ RFNE  LQVEG +   +L+A ++ + DE L  S GK  P  ++E +S+AQKYMSAG  F
Subjt:  VKQQPGESLCDYITRFNELALQVEGYSEGAALVAIIAGLEDERLLNSIGKSQPRIYAEFVSKAQKYMSAGNCF

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]6.1e-4445Show/hide
Query:  MKVEVSQKFKVSTFKPYDGKKDPIQHIDTYRNWVDFHGVLDAIRCRAFSFTLTGSTKQWFQRLKRRSINSFNELARAFLSQFRGAREQCKCHINLLTVKQ
        MK +   KFK+     YDG  DPI H+D YR W D + + +AIRCR FSFTLTGS + WF++LKR SI+SF ELA AF++QF G R + K    LLT+KQ
Subjt:  MKVEVSQKFKVSTFKPYDGKKDPIQHIDTYRNWVDFHGVLDAIRCRAFSFTLTGSTKQWFQRLKRRSINSFNELARAFLSQFRGAREQCKCHINLLTVKQ

Query:  QPGESLCDYITRFNELALQVEGYSEGAALVAIIAGLEDERLLNSIGKSQPRIYAEFVSKAQKYMSAGNCFDRRGQSTRGILQSTETKRNKKLRTDKGGQG
        +  ESL +Y+ RFNE  LQVEG ++  AL+A ++G++DERL+ S GK  P  + E +S+AQKYMSAG          R     +  +  +  +  +    
Subjt:  QPGESLCDYITRFNELALQVEGYSEGAALVAIIAGLEDERLLNSIGKSQPRIYAEFVSKAQKYMSAGNCFDRRGQSTRGILQSTETKRNKKLRTDKGGQG

Query:  RVDPSRGRPNRGDYLRKFEK
        R D   GR  + D   KFEK
Subjt:  RVDPSRGRPNRGDYLRKFEK

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]2.9e-5447.01Show/hide
Query:  LGKLIDQVDPPFTDEVMKVEVSQKFKVSTFKPYDGKKDPIQHIDTYRNWVDFHGVLDAIRCRAFSFTLTGSTKQWFQRLKRRSINSFNELARAFLSQFRG
        L +L+DQ D PFT+E+M+ +V  KFK+ T K +D   DP+ H+D YR W+D +GV +A+RCR FS TL GS + WF++LKR SI+SF  LARAF++QF G
Subjt:  LGKLIDQVDPPFTDEVMKVEVSQKFKVSTFKPYDGKKDPIQHIDTYRNWVDFHGVLDAIRCRAFSFTLTGSTKQWFQRLKRRSINSFNELARAFLSQFRG

Query:  AREQCKCHINLLTVKQQPGESLCDYITRFNELALQVEGYSEGAALVAIIAGLEDERLLNSIGKSQPRIYAEFVSKAQKYMSAGNCFDRRGQSTRGILQST
         R + +    LLT+KQ+  ESL DY+ RFNE  LQVEG ++  +L+A ++G+ DE L  S GK  P  ++E +S+AQ+YMSAG  F  + +      + T
Subjt:  AREQCKCHINLLTVKQQPGESLCDYITRFNELALQVEGYSEGAALVAIIAGLEDERLLNSIGKSQPRIYAEFVSKAQKYMSAGNCFDRRGQSTRGILQST

Query:  ETKRNKKLRTDKGGQGRVDPSRGRPNRGDYLRKFEKYTPTSIPQEQILTEI
        + KR    R+    QG     R R ++ D  RKFEKYTPT++P EQ+L EI
Subjt:  ETKRNKKLRTDKGGQGRVDPSRGRPNRGDYLRKFEKYTPTSIPQEQILTEI

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]3.9e-4645.11Show/hide
Query:  LGKLIDQVDPPFTDEVMKVEVSQKFKVSTFKPYDGKKDPIQHIDTYRNWVDFHGVLDAIRCRAFSFTLTGSTKQWFQRLKRRSINSFNELARAFLSQFRG
        L +L+ Q D PFT+E+M+ +V  KFK+ T KP+DG  +P+ H+D YR W+D +GV DAIRCR FS TL GS + WF++LKR SI+SF  LARAF++QF G
Subjt:  LGKLIDQVDPPFTDEVMKVEVSQKFKVSTFKPYDGKKDPIQHIDTYRNWVDFHGVLDAIRCRAFSFTLTGSTKQWFQRLKRRSINSFNELARAFLSQFRG

Query:  AREQCKCHINLLTVKQQPGESLCDYITRFNELALQVEGYSEGAALVAIIAGLEDERLLNSIGKSQPRIYAEFVSKAQKYMSAGN-CFDRRGQSTRGILQS
         R + +    LLT+KQ+  ESL DY+ RFNE  LQ+EG ++  +L+A ++G+ DE L  S  K  P  ++E +S+AQ+YMSA   C+ +R    +     
Subjt:  AREQCKCHINLLTVKQQPGESLCDYITRFNELALQVEGYSEGAALVAIIAGLEDERLLNSIGKSQPRIYAEFVSKAQKYMSAGN-CFDRRGQSTRGILQS

Query:  TETKRNKKLRTDKGGQGRVDPSRGRPNRGDYLRKF
        T+ KR    R+    QG     R R ++ D  RKF
Subjt:  TETKRNKKLRTDKGGQGRVDPSRGRPNRGDYLRKF

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166191.2e-5047.46Show/hide
Query:  MKVEVSQKFKVSTFKPYDGKKDPIQHIDTYRNWVDFHGVLDAIRCRAFSFTLTGSTKQWFQRLKRRSINSFNELARAFLSQFRGAREQCKCHINLLTVKQ
        MK +V  KFK+   K YDG  DPI H+D Y  W D +G+ +AIRCR FSFTLTGST+ WFQ+LKR+SI+SF ELARAF++QF G   + +    LLT+KQ
Subjt:  MKVEVSQKFKVSTFKPYDGKKDPIQHIDTYRNWVDFHGVLDAIRCRAFSFTLTGSTKQWFQRLKRRSINSFNELARAFLSQFRGAREQCKCHINLLTVKQ

Query:  QPGESLCDYITRFNELALQVEGYSEGAALVAIIAGLEDERLLNSIGKSQPRIYAEFVSKAQKYMSAGNCFDRRGQSTRGILQSTETKRNKKLRTDKGGQ-
        +  ESL DY+ RFN+  LQVEG ++   L+  I+G++DE+L+ S GK     ++E  S+AQ YMS G     + +  +G      TKR +      G + 
Subjt:  QPGESLCDYITRFNELALQVEGYSEGAALVAIIAGLEDERLLNSIGKSQPRIYAEFVSKAQKYMSAGNCFDRRGQSTRGILQSTETKRNKKLRTDKGGQ-

Query:  GRVDPSRGRPNRGDYLRKFEKYTPTSIPQEQILTEI
         R D  +GR  + D  RKFEKYTPT++P EQ+L EI
Subjt:  GRVDPSRGRPNRGDYLRKFEKYTPTSIPQEQILTEI

A0A6J1D7D2 uncharacterized protein LOC1110183074.8e-4249.71Show/hide
Query:  DEVMKVEVSQKFKVSTFKPYDGKKDPIQHIDTYRNWVDFHGVLDAIRCRAFSFTLTGSTKQWFQRLKRRSINSFNELARAFLSQFRGAREQCKCHINLLT
        +E+MKV+V  KFK+ T K +DG  D + H+D YR W+D +GV +A++CR FS TL+GS + WF++LKR SI+SF  LA+AF++QF G R + +    LLT
Subjt:  DEVMKVEVSQKFKVSTFKPYDGKKDPIQHIDTYRNWVDFHGVLDAIRCRAFSFTLTGSTKQWFQRLKRRSINSFNELARAFLSQFRGAREQCKCHINLLT

Query:  VKQQPGESLCDYITRFNELALQVEGYSEGAALVAIIAGLEDERLLNSIGKSQPRIYAEFVSKAQKYMSAGNCF
        +KQ+  ESL DY+ RFNE  LQVEG +   +L+A ++ + DE L  S GK  P  ++E +S+AQKYMSAG  F
Subjt:  VKQQPGESLCDYITRFNELALQVEGYSEGAALVAIIAGLEDERLLNSIGKSQPRIYAEFVSKAQKYMSAGNCF

A0A6J1DWY0 uncharacterized protein LOC1110252931.4e-5447.01Show/hide
Query:  LGKLIDQVDPPFTDEVMKVEVSQKFKVSTFKPYDGKKDPIQHIDTYRNWVDFHGVLDAIRCRAFSFTLTGSTKQWFQRLKRRSINSFNELARAFLSQFRG
        L +L+DQ D PFT+E+M+ +V  KFK+ T K +D   DP+ H+D YR W+D +GV +A+RCR FS TL GS + WF++LKR SI+SF  LARAF++QF G
Subjt:  LGKLIDQVDPPFTDEVMKVEVSQKFKVSTFKPYDGKKDPIQHIDTYRNWVDFHGVLDAIRCRAFSFTLTGSTKQWFQRLKRRSINSFNELARAFLSQFRG

Query:  AREQCKCHINLLTVKQQPGESLCDYITRFNELALQVEGYSEGAALVAIIAGLEDERLLNSIGKSQPRIYAEFVSKAQKYMSAGNCFDRRGQSTRGILQST
         R + +    LLT+KQ+  ESL DY+ RFNE  LQVEG ++  +L+A ++G+ DE L  S GK  P  ++E +S+AQ+YMSAG  F  + +      + T
Subjt:  AREQCKCHINLLTVKQQPGESLCDYITRFNELALQVEGYSEGAALVAIIAGLEDERLLNSIGKSQPRIYAEFVSKAQKYMSAGNCFDRRGQSTRGILQST

Query:  ETKRNKKLRTDKGGQGRVDPSRGRPNRGDYLRKFEKYTPTSIPQEQILTEI
        + KR    R+    QG     R R ++ D  RKFEKYTPT++P EQ+L EI
Subjt:  ETKRNKKLRTDKGGQGRVDPSRGRPNRGDYLRKFEKYTPTSIPQEQILTEI

A0A6J1DZ49 uncharacterized protein LOC1110248513.0e-4445Show/hide
Query:  MKVEVSQKFKVSTFKPYDGKKDPIQHIDTYRNWVDFHGVLDAIRCRAFSFTLTGSTKQWFQRLKRRSINSFNELARAFLSQFRGAREQCKCHINLLTVKQ
        MK +   KFK+     YDG  DPI H+D YR W D + + +AIRCR FSFTLTGS + WF++LKR SI+SF ELA AF++QF G R + K    LLT+KQ
Subjt:  MKVEVSQKFKVSTFKPYDGKKDPIQHIDTYRNWVDFHGVLDAIRCRAFSFTLTGSTKQWFQRLKRRSINSFNELARAFLSQFRGAREQCKCHINLLTVKQ

Query:  QPGESLCDYITRFNELALQVEGYSEGAALVAIIAGLEDERLLNSIGKSQPRIYAEFVSKAQKYMSAGNCFDRRGQSTRGILQSTETKRNKKLRTDKGGQG
        +  ESL +Y+ RFNE  LQVEG ++  AL+A ++G++DERL+ S GK  P  + E +S+AQKYMSAG          R     +  +  +  +  +    
Subjt:  QPGESLCDYITRFNELALQVEGYSEGAALVAIIAGLEDERLLNSIGKSQPRIYAEFVSKAQKYMSAGNCFDRRGQSTRGILQSTETKRNKKLRTDKGGQG

Query:  RVDPSRGRPNRGDYLRKFEK
        R D   GR  + D   KFEK
Subjt:  RVDPSRGRPNRGDYLRKFEK

A0A6J1E1E7 uncharacterized protein LOC1110255481.9e-4645.11Show/hide
Query:  LGKLIDQVDPPFTDEVMKVEVSQKFKVSTFKPYDGKKDPIQHIDTYRNWVDFHGVLDAIRCRAFSFTLTGSTKQWFQRLKRRSINSFNELARAFLSQFRG
        L +L+ Q D PFT+E+M+ +V  KFK+ T KP+DG  +P+ H+D YR W+D +GV DAIRCR FS TL GS + WF++LKR SI+SF  LARAF++QF G
Subjt:  LGKLIDQVDPPFTDEVMKVEVSQKFKVSTFKPYDGKKDPIQHIDTYRNWVDFHGVLDAIRCRAFSFTLTGSTKQWFQRLKRRSINSFNELARAFLSQFRG

Query:  AREQCKCHINLLTVKQQPGESLCDYITRFNELALQVEGYSEGAALVAIIAGLEDERLLNSIGKSQPRIYAEFVSKAQKYMSAGN-CFDRRGQSTRGILQS
         R + +    LLT+KQ+  ESL DY+ RFNE  LQ+EG ++  +L+A ++G+ DE L  S  K  P  ++E +S+AQ+YMSA   C+ +R    +     
Subjt:  AREQCKCHINLLTVKQQPGESLCDYITRFNELALQVEGYSEGAALVAIIAGLEDERLLNSIGKSQPRIYAEFVSKAQKYMSAGN-CFDRRGQSTRGILQS

Query:  TETKRNKKLRTDKGGQGRVDPSRGRPNRGDYLRKF
        T+ KR    R+    QG     R R ++ D  RKF
Subjt:  TETKRNKKLRTDKGGQGRVDPSRGRPNRGDYLRKF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAAAAGGACAACCTCACTTGGAAAACTGATCGACCAAGTCGACCCACCTTTCACTGATGAAGTCATGAAAGTCGAGGTGTCCCAGAAGTTCAAGGTATCCACATT
CAAACCATATGATGGCAAGAAGGACCCCATACAACACATAGACACTTACAGGAACTGGGTGGACTTCCATGGTGTTTTAGACGCAATTAGGTGTCGCGCTTTCTCTTTCA
CTCTAACAGGATCAACCAAGCAATGGTTTCAGAGGTTGAAAAGGAGATCCATCAACTCTTTCAATGAACTAGCTCGAGCATTCCTCTCGCAGTTCAGGGGAGCTAGAGAA
CAATGCAAATGTCACATCAACCTTCTAACTGTTAAGCAACAGCCAGGTGAGAGTCTGTGTGACTATATAACTCGTTTTAATGAGTTAGCACTACAGGTGGAGGGATACAG
TGAGGGAGCAGCCCTGGTAGCCATAATCGCCGGACTGGAAGACGAGAGACTGCTTAATTCGATAGGTAAGAGCCAACCTCGAATCTATGCTGAATTTGTCTCCAAGGCCC
AAAAGTACATGAGTGCAGGGAATTGCTTTGATCGAAGAGGTCAGAGCACAAGAGGTATTCTTCAGTCGACTGAAACCAAAAGAAACAAAAAATTGCGGACAGACAAAGGA
GGCCAAGGTCGAGTTGACCCTAGCCGAGGCCGACCAAACCGAGGAGACTACCTAAGGAAGTTTGAAAAGTACACTCCTACCTCAATCCCACAGGAGCAGATCTTAACAGA
AATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCAAAAAGGACAACCTCACTTGGAAAACTGATCGACCAAGTCGACCCACCTTTCACTGATGAAGTCATGAAAGTCGAGGTGTCCCAGAAGTTCAAGGTATCCACATT
CAAACCATATGATGGCAAGAAGGACCCCATACAACACATAGACACTTACAGGAACTGGGTGGACTTCCATGGTGTTTTAGACGCAATTAGGTGTCGCGCTTTCTCTTTCA
CTCTAACAGGATCAACCAAGCAATGGTTTCAGAGGTTGAAAAGGAGATCCATCAACTCTTTCAATGAACTAGCTCGAGCATTCCTCTCGCAGTTCAGGGGAGCTAGAGAA
CAATGCAAATGTCACATCAACCTTCTAACTGTTAAGCAACAGCCAGGTGAGAGTCTGTGTGACTATATAACTCGTTTTAATGAGTTAGCACTACAGGTGGAGGGATACAG
TGAGGGAGCAGCCCTGGTAGCCATAATCGCCGGACTGGAAGACGAGAGACTGCTTAATTCGATAGGTAAGAGCCAACCTCGAATCTATGCTGAATTTGTCTCCAAGGCCC
AAAAGTACATGAGTGCAGGGAATTGCTTTGATCGAAGAGGTCAGAGCACAAGAGGTATTCTTCAGTCGACTGAAACCAAAAGAAACAAAAAATTGCGGACAGACAAAGGA
GGCCAAGGTCGAGTTGACCCTAGCCGAGGCCGACCAAACCGAGGAGACTACCTAAGGAAGTTTGAAAAGTACACTCCTACCTCAATCCCACAGGAGCAGATCTTAACAGA
AATCTAG
Protein sequenceShow/hide protein sequence
MPKRTTSLGKLIDQVDPPFTDEVMKVEVSQKFKVSTFKPYDGKKDPIQHIDTYRNWVDFHGVLDAIRCRAFSFTLTGSTKQWFQRLKRRSINSFNELARAFLSQFRGARE
QCKCHINLLTVKQQPGESLCDYITRFNELALQVEGYSEGAALVAIIAGLEDERLLNSIGKSQPRIYAEFVSKAQKYMSAGNCFDRRGQSTRGILQSTETKRNKKLRTDKG
GQGRVDPSRGRPNRGDYLRKFEKYTPTSIPQEQILTEI