CuGenDBv2

Gene ID	Lag0000158
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	CCHC-type domain-containing protein
Genome location	chr4:645639..646692
RNA-Seq Expression	Lag0000158
Synteny	Lag0000158
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008233 - peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039476.1 uncharacterized protein E6C27_scaffold64G002900 [Cucumis melo var. makuwa]

1.1e-04

63.41

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Query:  KDTKQNEFLKLVQGLVTVAEYQHKYIELSEYPTGVIEDEID
        +D K+NEFL+L QG +TVAEY+ KY ELS+Y T VIEDE++
Subjt:  KDTKQNEFLKLVQGLVTVAEYQHKYIELSEYPTGVIEDEID

KAA0042457.1 reverse transcriptase [Cucumis melo var. makuwa]

1.4e-04

60.98

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Query:  KDTKQNEFLKLVQGLVTVAEYQHKYIELSEYPTGVIEDEID
        +D K+NEFL+L+QG +TV EY+ KY ELS+Y T VIEDE++
Subjt:  KDTKQNEFLKLVQGLVTVAEYQHKYIELSEYPTGVIEDEID

KAA0067055.1 reverse transcriptase [Cucumis melo var. makuwa]

1.9e-04

60.98

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Query:  KDTKQNEFLKLVQGLVTVAEYQHKYIELSEYPTGVIEDEID
        +D K NEFL+L QG +T+AEY+ KY ELS+Y T VIEDE++
Subjt:  KDTKQNEFLKLVQGLVTVAEYQHKYIELSEYPTGVIEDEID

TYK15233.1 uncharacterized protein E5676_scaffold892G00030 [Cucumis melo var. makuwa]

1.1e-04

63.41

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Query:  KDTKQNEFLKLVQGLVTVAEYQHKYIELSEYPTGVIEDEID
        +D K+NEFL+L QG +TVAEY+ KY ELS+Y T VIEDE++
Subjt:  KDTKQNEFLKLVQGLVTVAEYQHKYIELSEYPTGVIEDEID

TYK22919.1 reverse transcriptase [Cucumis melo var. makuwa]

1.4e-04

60.98

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Query:  KDTKQNEFLKLVQGLVTVAEYQHKYIELSEYPTGVIEDEID
        +D K+NEFL+L+QG +TV EY+ KY ELS+Y T VIEDE++
Subjt:  KDTKQNEFLKLVQGLVTVAEYQHKYIELSEYPTGVIEDEID

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TBS0 CCHC-type domain-containing protein

5.3e-05

63.41

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Query:  KDTKQNEFLKLVQGLVTVAEYQHKYIELSEYPTGVIEDEID
        +D K+NEFL+L QG +TVAEY+ KY ELS+Y T VIEDE++
Subjt:  KDTKQNEFLKLVQGLVTVAEYQHKYIELSEYPTGVIEDEID

A0A5A7TL70 Reverse transcriptase

6.9e-05

60.98

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Query:  KDTKQNEFLKLVQGLVTVAEYQHKYIELSEYPTGVIEDEID
        +D K+NEFL+L+QG +TV EY+ KY ELS+Y T VIEDE++
Subjt:  KDTKQNEFLKLVQGLVTVAEYQHKYIELSEYPTGVIEDEID

A0A5D3CTK6 CCHC-type domain-containing protein

5.3e-05

63.41

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Query:  KDTKQNEFLKLVQGLVTVAEYQHKYIELSEYPTGVIEDEID
        +D K+NEFL+L QG +TVAEY+ KY ELS+Y T VIEDE++
Subjt:  KDTKQNEFLKLVQGLVTVAEYQHKYIELSEYPTGVIEDEID

A0A5D3DI38 Reverse transcriptase

6.9e-05

60.98

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Query:  KDTKQNEFLKLVQGLVTVAEYQHKYIELSEYPTGVIEDEID
        +D K+NEFL+L+QG +TV EY+ KY ELS+Y T VIEDE++
Subjt:  KDTKQNEFLKLVQGLVTVAEYQHKYIELSEYPTGVIEDEID

A0A5D3DS52 Reverse transcriptase

9.0e-05

60.98

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Query:  KDTKQNEFLKLVQGLVTVAEYQHKYIELSEYPTGVIEDEID
        +D K NEFL+L QG +T+AEY+ KY ELS+Y T VIEDE++
Subjt:  KDTKQNEFLKLVQGLVTVAEYQHKYIELSEYPTGVIEDEID

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGAGAAAGCAATTTCAAACGGTCAAGATCCGATGGAAAGTCGGCTTCGCCGATGATTGAATGTTCTTCTCCCAAGTGTGGCAAGTCTCGTAGGCTCCAAGAGATTGA
AACTCAAGAGACTGCCAGCAGAAGAAATGCAATGGAGGAAGGAGAAGTTGGTGAGACTAGTCATGAGCAGGAGGAGCATCAAGGAAAAATAAATGTTGGGGAAAACAGAC
AATTAATAGCTAGCATTGCTTACAGTGTAGCAGAAGCAATGAAAAGGATCAAGAATGACCCAACGAAGAATTATAAAATTGAGCAACTAATAGCCTTGGGGAGCGAAGCC
ATTAACAGGAACGACGAATCCTACAGATGCAAAAATATGGATGGACAAGGTGGAAATGGGCCTAAAGACACAAAGCAAAATGAATTCTTGAAGCTTGTGCAGGGATTAGT
GACAGTTGCAGAATATCAGCACAAATACATTGAGCTGTCAGAATATCCCACTGGCGTGATAGAAGATGAAATTGATTGA

mRNA sequence

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Protein sequence

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MRESNFKRSRSDGKSASPMIECSSPKCGKSRRLQEIETQETASRRNAMEEGEVGETSHEQEEHQGKINVGENRQLIASIAYSVAEAMKRIKNDPTKNYKIEQLIALGSEA
INRNDESYRCKNMDGQGGNGPKDTKQNEFLKLVQGLVTVAEYQHKYIELSEYPTGVIEDEID

Lag0000158 (gene) of Sponge gourd (AG-4) v1 genome