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Lag0000159 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000159
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr4:655608..656108
RNA-Seq ExpressionLag0000159
SyntenyLag0000159
Gene Ontology termsNA
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036099.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-3860.87Show/hide
Query:  ADKHSKHIWTRQEEAKLVECLVELVHEGGWRGDNDTLRPGYLARLKRMMKEKMSSCTIESTMIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIVA
        +++  +H+WTR+EE  LVECL+ELV  GGW+ DN T RPGYLA+L RMM EK+  C + +T +IDC++++LKR + AI+EM GP CSGFGWNDE KCIVA
Subjt:  ADKHSKHIWTRQEEAKLVECLVELVHEGGWRGDNDTLRPGYLARLKRMMKEKMSSCTIESTMIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIVA

Query:  EKEVFDAWVKVRSLI
        EKE+FD WV+VR++I
Subjt:  EKEVFDAWVKVRSLI

KAA0046637.1 retrotransposon protein [Cucumis melo var. makuwa]6.1e-3759.13Show/hide
Query:  ADKHSKHIWTRQEEAKLVECLVELVHEGGWRGDNDTLRPGYLARLKRMMKEKMSSCTIESTMIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIVA
        +++  +H+WTR+EE  LVECL+ELV  GGW+ DN T RPGYLA+L RMM EK+  C + +T +IDC++++LKR + AI+EM GP CSGFGWNDE KCIVA
Subjt:  ADKHSKHIWTRQEEAKLVECLVELVHEGGWRGDNDTLRPGYLARLKRMMKEKMSSCTIESTMIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIVA

Query:  EKEVFDAWVKVRSLI
        +KE+FD WV+V ++I
Subjt:  EKEVFDAWVKVRSLI

KAA0053616.1 retrotransposon protein [Cucumis melo var. makuwa]2.1e-3760Show/hide
Query:  ADKHSKHIWTRQEEAKLVECLVELVHEGGWRGDNDTLRPGYLARLKRMMKEKMSSCTIESTMIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIVA
        +++  +H+WTR+EE  LVECL+ELV  GGW+ DN T RPGYLA+L RMM EK+  C + +T +IDC++++LKR + AI+EM GP CSGFGWNDE KCIVA
Subjt:  ADKHSKHIWTRQEEAKLVECLVELVHEGGWRGDNDTLRPGYLARLKRMMKEKMSSCTIESTMIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIVA

Query:  EKEVFDAWVKVRSLI
        EKE+FD WV+V ++I
Subjt:  EKEVFDAWVKVRSLI

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]6.1e-3760.91Show/hide
Query:  ADKHSKHIWTRQEEAKLVECLVELVHEGGWRGDNDTLRPGYLARLKRMMKEKMSSCTIESTMIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIVA
        +++ S+H+WTR+EE  LVECL+ELV  GGW+ DN T RPGYLA+L RMM EK+  C + +T +IDC++++LKR + AI+EM GP CSGFGWNDE KCI+A
Subjt:  ADKHSKHIWTRQEEAKLVECLVELVHEGGWRGDNDTLRPGYLARLKRMMKEKMSSCTIESTMIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIVA

Query:  EKEVFDAWVK
        EKE+FD WV+
Subjt:  EKEVFDAWVK

XP_031739703.1 uncharacterized protein LOC116403241 [Cucumis sativus]8.0e-3757.02Show/hide
Query:  LYPCRLVA--GADKHSKHIWTRQEEAKLVECLVELVHEGGWRGDNDTLRPGYLARLKRMMKEKMSSCTIESTMIIDCKVRSLKRQYSAISEMLGPGCSGF
        ++ C +V+   + +  K++WT++EEA LVE +VELV  GGW+ DNDT RPGYLA+L RMM  K+S C + +T +IDC++++LKR Y AI+EM GP CSGF
Subjt:  LYPCRLVA--GADKHSKHIWTRQEEAKLVECLVELVHEGGWRGDNDTLRPGYLARLKRMMKEKMSSCTIESTMIIDCKVRSLKRQYSAISEMLGPGCSGF

Query:  GWNDEFKCIVAEKEVFDAWVK
        GWND+ KCIVAEKE+FD WV+
Subjt:  GWNDEFKCIVAEKEVFDAWVK

TrEMBL top hitse value%identityAlignment
A0A5A7T3X9 Retrotransposon protein1.2e-3860.87Show/hide
Query:  ADKHSKHIWTRQEEAKLVECLVELVHEGGWRGDNDTLRPGYLARLKRMMKEKMSSCTIESTMIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIVA
        +++  +H+WTR+EE  LVECL+ELV  GGW+ DN T RPGYLA+L RMM EK+  C + +T +IDC++++LKR + AI+EM GP CSGFGWNDE KCIVA
Subjt:  ADKHSKHIWTRQEEAKLVECLVELVHEGGWRGDNDTLRPGYLARLKRMMKEKMSSCTIESTMIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIVA

Query:  EKEVFDAWVKVRSLI
        EKE+FD WV+VR++I
Subjt:  EKEVFDAWVKVRSLI

A0A5A7TXH6 Retrotransposon protein3.0e-3759.13Show/hide
Query:  ADKHSKHIWTRQEEAKLVECLVELVHEGGWRGDNDTLRPGYLARLKRMMKEKMSSCTIESTMIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIVA
        +++  +H+WTR+EE  LVECL+ELV  GGW+ DN T RPGYLA+L RMM EK+  C + +T +IDC++++LKR + AI+EM GP CSGFGWNDE KCIVA
Subjt:  ADKHSKHIWTRQEEAKLVECLVELVHEGGWRGDNDTLRPGYLARLKRMMKEKMSSCTIESTMIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIVA

Query:  EKEVFDAWVKVRSLI
        +KE+FD WV+V ++I
Subjt:  EKEVFDAWVKVRSLI

A0A5A7UHB1 Retrotransposon protein1.0e-3760Show/hide
Query:  ADKHSKHIWTRQEEAKLVECLVELVHEGGWRGDNDTLRPGYLARLKRMMKEKMSSCTIESTMIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIVA
        +++  +H+WTR+EE  LVECL+ELV  GGW+ DN T RPGYLA+L RMM EK+  C + +T +IDC++++LKR + AI+EM GP CSGFGWNDE KCIVA
Subjt:  ADKHSKHIWTRQEEAKLVECLVELVHEGGWRGDNDTLRPGYLARLKRMMKEKMSSCTIESTMIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIVA

Query:  EKEVFDAWVKVRSLI
        EKE+FD WV+V ++I
Subjt:  EKEVFDAWVKVRSLI

A0A5A7VES2 Retrotransposon protein3.0e-3760.91Show/hide
Query:  ADKHSKHIWTRQEEAKLVECLVELVHEGGWRGDNDTLRPGYLARLKRMMKEKMSSCTIESTMIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIVA
        +++ S+H+WTR+EE  LVECL+ELV  GGW+ DN T RPGYLA+L RMM EK+  C + +T +IDC++++LKR + AI+EM GP CSGFGWNDE KCI+A
Subjt:  ADKHSKHIWTRQEEAKLVECLVELVHEGGWRGDNDTLRPGYLARLKRMMKEKMSSCTIESTMIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIVA

Query:  EKEVFDAWVK
        EKE+FD WV+
Subjt:  EKEVFDAWVK

A0A5D3CWL2 Retrotransposon protein8.6e-3760.91Show/hide
Query:  ADKHSKHIWTRQEEAKLVECLVELVHEGGWRGDNDTLRPGYLARLKRMMKEKMSSCTIESTMIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIVA
        +++  +H+WTR+EE  LVECL+ELV  GGW+ DN T RPGYLA+L RMM EK+  C + +T +IDC++++LKR + AI+EM GP CSGFGWNDE KCIVA
Subjt:  ADKHSKHIWTRQEEAKLVECLVELVHEGGWRGDNDTLRPGYLARLKRMMKEKMSSCTIESTMIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIVA

Query:  EKEVFDAWVK
        EKE+FD WV+
Subjt:  EKEVFDAWVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGGTTGGATGAAGGTGATGTTGGTTGGTCCGAACCCTTACCTCTCGATGGCGAGAACATTACCTTCATTCAAAGCTTCATCAGAATACATACTTACGAAATCTAA
TGACGCAATACTCTATCCATGTAGATTAGTGGCAGGTGCAGATAAACATTCGAAACACATTTGGACGAGGCAGGAGGAGGCAAAGTTGGTGGAATGCCTCGTGGAGCTCG
TCCACGAAGGCGGTTGGAGAGGGGACAACGACACCCTCAGGCCCGGATACCTCGCCCGACTAAAGCGAATGATGAAAGAGAAAATGTCGTCCTGCACCATAGAGTCAACA
ATGATAATAGACTGCAAGGTGCGGTCCTTGAAACGACAATACAGTGCCATCTCAGAGATGCTGGGTCCGGGTTGCAGTGGATTCGGTTGGAATGATGAGTTTAAATGCAT
CGTGGCTGAGAAGGAAGTCTTCGATGCATGGGTGAAGGTACGATCATTAATCATTCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGGTTGGATGAAGGTGATGTTGGTTGGTCCGAACCCTTACCTCTCGATGGCGAGAACATTACCTTCATTCAAAGCTTCATCAGAATACATACTTACGAAATCTAA
TGACGCAATACTCTATCCATGTAGATTAGTGGCAGGTGCAGATAAACATTCGAAACACATTTGGACGAGGCAGGAGGAGGCAAAGTTGGTGGAATGCCTCGTGGAGCTCG
TCCACGAAGGCGGTTGGAGAGGGGACAACGACACCCTCAGGCCCGGATACCTCGCCCGACTAAAGCGAATGATGAAAGAGAAAATGTCGTCCTGCACCATAGAGTCAACA
ATGATAATAGACTGCAAGGTGCGGTCCTTGAAACGACAATACAGTGCCATCTCAGAGATGCTGGGTCCGGGTTGCAGTGGATTCGGTTGGAATGATGAGTTTAAATGCAT
CGTGGCTGAGAAGGAAGTCTTCGATGCATGGGTGAAGGTACGATCATTAATCATTCATTGA
Protein sequenceShow/hide protein sequence
MLGWMKVMLVGPNPYLSMARTLPSFKASSEYILTKSNDAILYPCRLVAGADKHSKHIWTRQEEAKLVECLVELVHEGGWRGDNDTLRPGYLARLKRMMKEKMSSCTIEST
MIIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIVAEKEVFDAWVKVRSLIIH