CuGenDBv2

Gene ID	Lag0000160
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrotransposon protein
Genome location	chr4:658714..659677
RNA-Seq Expression	Lag0000160
Synteny	Lag0000160
Gene Ontology terms	NA
InterPro domains	IPR009027 - Ribosomal protein L9/RNase H1, N-terminal IPR011320 - Ribonuclease H1, N-terminal IPR037056 - Ribonuclease H1, N-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]

1.9e-48

61.64

Show/hide

Query:  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHI
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQL  FR+IH SDL CR+STRMDRRCFAILC LLRT++GL  TE+VDVEEMV +FLHI
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHI

Query:  VAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE
        +AHDVKN+VI+R F RSGET+SRHFN+ L  V+RL+D LLKKP+P+   C D RW+WFE
Subjt:  VAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]

5.5e-48

61.01

Show/hide

Query:  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHI
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQL  FR+IH SDL CR+STRMDRRCFAILC LLRT++GL  TE+VDVEEMV +FLHI
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHI

Query:  VAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE
        +AHDVKN+VI+R F RSGET+SRHFN+ L  V+RL++ LLKKP+P+   C D RW+WFE
Subjt:  VAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

1.9e-48

61.64

Show/hide

Query:  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHI
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQL  FR+IH SDL CR+STRMDRRCFAILC LLRT++GL  TE+VDVEEMV +FLHI
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHI

Query:  VAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE
        +AHDVKN+VI+R F RSGET+SRHFN+ L  V+RL+D LLKKP+P+   C D RW+WFE
Subjt:  VAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE

KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]

2.4e-48

61.64

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Query:  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHI
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQL  FR+IH SDL CR+STRMDRRCFAILC LLRT++GL  TE+VDVEEMV +FLHI
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHI

Query:  VAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE
        +AHDVKN+VI+R F RSGET+SRHFN+ L  V+RL++ LLKKP+P+   C D RWKWFE
Subjt:  VAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE

KAA0065736.1 retrotransposon protein [Cucumis melo var. makuwa]

5.5e-48

61.01

Show/hide

Query:  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHI
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQL  FR+IHESDL CR+STRMDRRCFAILC LLRT++GL  TE+VDVEEMV +FLHI
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHI

Query:  VAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE
        +AHDVKN+VI+R F RSGET+ RHFN+    V+RL+D LLKKP+P+   C D RW+WFE
Subjt:  VAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SWD8 Retrotransposon protein

9.1e-49

61.64

Show/hide

Query:  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHI
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQL  FR+IH SDL CR+STRMDRRCFAILC LLRT++GL  TE+VDVEEMV +FLHI
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHI

Query:  VAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE
        +AHDVKN+VI+R F RSGET+SRHFN+ L  V+RL+D LLKKP+P+   C D RW+WFE
Subjt:  VAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE

A0A5A7TXW1 Retrotransposon protein

9.1e-49

61.64

Show/hide

Query:  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHI
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQL  FR+IH SDL CR+STRMDRRCFAILC LLRT++GL  TE+VDVEEMV +FLHI
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHI

Query:  VAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE
        +AHDVKN+VI+R F RSGET+SRHFN+ L  V+RL+D LLKKP+P+   C D RW+WFE
Subjt:  VAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE

A0A5A7U476 Retrotransposon protein

1.2e-48

61.64

Show/hide

Query:  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHI
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQL  FR+IH SDL CR+STRMDRRCFAILC LLRT++GL  TE+VDVEEMV +FLHI
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHI

Query:  VAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE
        +AHDVKN+VI+R F RSGET+SRHFN+ L  V+RL++ LLKKP+P+   C D RWKWFE
Subjt:  VAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE

A0A5A7VHB0 Retrotransposon protein

2.6e-48

61.01

Show/hide

Query:  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHI
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQL  FR+IHESDL CR+STRMDRRCFAILC LLRT++GL  TE+VDVEEMV +FLHI
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHI

Query:  VAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE
        +AHDVKN+VI+R F RSGET+ RHFN+    V+RL+D LLKKP+P+   C D RW+WFE
Subjt:  VAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE

A0A5D3BDX0 Retrotransposon protein

2.6e-48

61.01

Show/hide

Query:  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHI
        HEL SI++    SQRQL  ++    N+ +RI +     RH+IRQL  FR+IH SDL CR+STRMDRRCFAILC LLRT++GL  TE+VDVEEMV +FLHI
Subjt:  HELVSILSIMADSQRQLFNLINFFMNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHI

Query:  VAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE
        +AHDVKN+VI+R F RSGET+SRHFN+ L  V+RL++ LLKKP+P+   C D RW+WFE
Subjt:  VAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRLYDVLLKKPEPITASCQDGRWKWFE

SwissProt top hits

e value

%identity

Alignment

Q07762 Ribonuclease H

1.0e-04

48.98

Show/hide

Query:  FYVVFVGLNPGIYTSWVECHKQVNQFKGALHKSYPTFPEAEYAFRHYVT
        FYVV VG   GIY++W +C +QV  F GA++KS+ T  EA    R Y+T
Subjt:  FYVVFVGLNPGIYTSWVECHKQVNQFKGALHKSYPTFPEAEYAFRHYVT

Q9KEI9 Ribonuclease H

4.0e-09

44.74

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Query:  MGTSKFYVVFVGLNPGIYTSWVECHKQVNQFKGALHKSYPTFPEAEYAFRHYVTGTRDEPNLVDQHEACRNLLAEV
        M  SK+YVV+ G  PGIYTSW  C  QV  + GA  KSYP+  EAE AFR    G    P L  +     +L  +V
Subjt:  MGTSKFYVVFVGLNPGIYTSWVECHKQVNQFKGALHKSYPTFPEAEYAFRHYVTGTRDEPNLVDQHEACRNLLAEV

Arabidopsis top hits

e value

%identity

Alignment

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

3.7e-10

35.23

Show/hide

Query:  FRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHIVAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRL
        +++++  +  C E+ RMD+  F  LC LL+T   L  T  + +E  + IFL I+ H+++ + ++  F  SGET+SRHFN  L+ V+ +
Subjt:  FRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHIVAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLRL

Sequences

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CDS sequence

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ATGGGGACATCGAAATTCTATGTTGTGTTTGTTGGTCTCAACCCAGGAATTTACACCTCGTGGGTTGAATGCCACAAACAAGTTAACCAGTTTAAGGGAGCACTACACAA
GTCGTATCCAACATTTCCAGAAGCAGAGTATGCATTTAGGCATTACGTTACGGGCACTCGTGACGAACCAAACCTCGTTGACCAACATGAAGCGTGTCGTAACCTTCTTG
CTGAAGTAGTACCGTTCCTAATGGATTCCATAACCCCACATGAACTTGTGTCCATACTTTCAATAATGGCTGACTCTCAGCGTCAACTATTCAACTTGATCAACTTCTTC
ATGAACAACAACCGTAGGATAGAAAACCAATCTTCCTACATCAGACACCAGATAAGGCAATTAGTCTGCTTCCGGTTGATCCATGAAAGTGACCTGTGCTGTCGAGAAAG
CACCAGGATGGATAGGAGATGTTTTGCCATACTATGTAGTTTGCTGAGAACGATGTCCGGGTTGGTAGGAACAGAAATCGTAGACGTGGAAGAGATGGTCGTGATTTTCT
TGCACATCGTTGCTCACGATGTTAAGAATCAAGTCATTAGAAGAAATTTTGCACGGTCAGGCGAGACCGTTTCTCGGCACTTCAACGTGACTTTGAGTGTCGTACTACGA
TTGTATGACGTTCTACTTAAGAAACCGGAACCGATCACGGCTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGGTATGGATACTATATGTTTGTACACATAGTGAAGA
TCTTACAACATCCTTCTGA

mRNA sequence

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Protein sequence

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MGTSKFYVVFVGLNPGIYTSWVECHKQVNQFKGALHKSYPTFPEAEYAFRHYVTGTRDEPNLVDQHEACRNLLAEVVPFLMDSITPHELVSILSIMADSQRQLFNLINFF
MNNNRRIENQSSYIRHQIRQLVCFRLIHESDLCCRESTRMDRRCFAILCSLLRTMSGLVGTEIVDVEEMVVIFLHIVAHDVKNQVIRRNFARSGETVSRHFNVTLSVVLR
LYDVLLKKPEPITASCQDGRWKWFEVWILYVCTHSEDLTTSF

Lag0000160 (gene) of Sponge gourd (AG-4) v1 genome