CuGenDBv2

Gene ID	Lag0000168
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Genome location	chr4:793632..793949
RNA-Seq Expression	Lag0000168
Synteny	Lag0000168
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008233 - peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0051909.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

2.4e-31

83.72

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Query:  DMDSINNQLHVPEGPITRSKAKKIQEVFTLHVQKLANAQREAENFEPKFLYNVSLASQEENGVKMAREKLCILEDGTGDEKSVQNL
        D+DS+NN LHVPEGPIT+ KAKKIQE FTLHVQKLANAQRE +NFE KFLYNVS ASQEE+GVKMAREKLC  EDGTG+EKSVQNL
Subjt:  DMDSINNQLHVPEGPITRSKAKKIQEVFTLHVQKLANAQREAENFEPKFLYNVSLASQEENGVKMAREKLCILEDGTGDEKSVQNL

KAA0059666.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

3.5e-30

82.56

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Query:  DMDSINNQLHVPEGPITRSKAKKIQEVFTLHVQKLANAQREAENFEPKFLYNVSLASQEENGVKMAREKLCILEDGTGDEKSVQNL
        D+D +NN LHVPEGPIT+ KAKKIQE FTLHVQKLANAQRE +NFE KFLYNVS ASQEE+ VKMAREKLC LEDGTG+EKSVQNL
Subjt:  DMDSINNQLHVPEGPITRSKAKKIQEVFTLHVQKLANAQREAENFEPKFLYNVSLASQEENGVKMAREKLCILEDGTGDEKSVQNL

KAA0067206.1 hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa]

3.2e-31

83.72

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Query:  DMDSINNQLHVPEGPITRSKAKKIQEVFTLHVQKLANAQREAENFEPKFLYNVSLASQEENGVKMAREKLCILEDGTGDEKSVQNL
        D+DSINN LHVPEGPIT+ KAKKIQE FTLHVQKL NAQRE +NFEPKFLYNVS ASQEE+ +KMA EKLC LEDGTGDEKSVQNL
Subjt:  DMDSINNQLHVPEGPITRSKAKKIQEVFTLHVQKLANAQREAENFEPKFLYNVSLASQEENGVKMAREKLCILEDGTGDEKSVQNL

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]

7.1e-31

83.72

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Query:  DMDSINNQLHVPEGPITRSKAKKIQEVFTLHVQKLANAQREAENFEPKFLYNVSLASQEENGVKMAREKLCILEDGTGDEKSVQNL
        D+DS+NN LHVPEGPIT+ KAKKIQE FTLHVQKLANAQRE +NFE KFLYNVS ASQEE+GVKMAREKLC LEDGT +EKSVQNL
Subjt:  DMDSINNQLHVPEGPITRSKAKKIQEVFTLHVQKLANAQREAENFEPKFLYNVSLASQEENGVKMAREKLCILEDGTGDEKSVQNL

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]

7.1e-31

83.72

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Query:  DMDSINNQLHVPEGPITRSKAKKIQEVFTLHVQKLANAQREAENFEPKFLYNVSLASQEENGVKMAREKLCILEDGTGDEKSVQNL
        D+DS+NN LHVPEGPIT+ KAKKIQE FTLHVQKLANAQRE +NFE KFLYNVS ASQEE+ VKMAREKLC LEDGTG+EKSVQNL
Subjt:  DMDSINNQLHVPEGPITRSKAKKIQEVFTLHVQKLANAQREAENFEPKFLYNVSLASQEENGVKMAREKLCILEDGTGDEKSVQNL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein

1.2e-31

83.72

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Query:  DMDSINNQLHVPEGPITRSKAKKIQEVFTLHVQKLANAQREAENFEPKFLYNVSLASQEENGVKMAREKLCILEDGTGDEKSVQNL
        D+DS+NN LHVPEGPIT+ KAKKIQE FTLHVQKLANAQRE +NFE KFLYNVS ASQEE+GVKMAREKLC  EDGTG+EKSVQNL
Subjt:  DMDSINNQLHVPEGPITRSKAKKIQEVFTLHVQKLANAQREAENFEPKFLYNVSLASQEENGVKMAREKLCILEDGTGDEKSVQNL

A0A5A7UZP1 Transposon Ty3-I Gag-Pol polyprotein

1.7e-30

82.56

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Query:  DMDSINNQLHVPEGPITRSKAKKIQEVFTLHVQKLANAQREAENFEPKFLYNVSLASQEENGVKMAREKLCILEDGTGDEKSVQNL
        D+D +NN LHVPEGPIT+ KAKKIQE FTLHVQKLANAQRE +NFE KFLYNVS ASQEE+ VKMAREKLC LEDGTG+EKSVQNL
Subjt:  DMDSINNQLHVPEGPITRSKAKKIQEVFTLHVQKLANAQREAENFEPKFLYNVSLASQEENGVKMAREKLCILEDGTGDEKSVQNL

A0A5A7VL78 RT_RNaseH_2 domain-containing protein

1.5e-31

83.72

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Query:  DMDSINNQLHVPEGPITRSKAKKIQEVFTLHVQKLANAQREAENFEPKFLYNVSLASQEENGVKMAREKLCILEDGTGDEKSVQNL
        D+DSINN LHVPEGPIT+ KAKKIQE FTLHVQKL NAQRE +NFEPKFLYNVS ASQEE+ +KMA EKLC LEDGTGDEKSVQNL
Subjt:  DMDSINNQLHVPEGPITRSKAKKIQEVFTLHVQKLANAQREAENFEPKFLYNVSLASQEENGVKMAREKLCILEDGTGDEKSVQNL

A0A5D3BWE8 F15O4.13

3.4e-31

83.72

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Query:  DMDSINNQLHVPEGPITRSKAKKIQEVFTLHVQKLANAQREAENFEPKFLYNVSLASQEENGVKMAREKLCILEDGTGDEKSVQNL
        D+DS+NN LHVPEGPIT+ KAKKIQE FTLHVQKLANAQRE +NFE KFLYNVS ASQEE+GVKMAREKLC LEDGT +EKSVQNL
Subjt:  DMDSINNQLHVPEGPITRSKAKKIQEVFTLHVQKLANAQREAENFEPKFLYNVSLASQEENGVKMAREKLCILEDGTGDEKSVQNL

A0A5D3DRJ1 F15O4.13

3.4e-31

83.72

Show/hide

Query:  DMDSINNQLHVPEGPITRSKAKKIQEVFTLHVQKLANAQREAENFEPKFLYNVSLASQEENGVKMAREKLCILEDGTGDEKSVQNL
        D+DS+NN LHVPEGPIT+ KAKKIQE FTLHVQKLANAQRE +NFE KFLYNVS ASQEE+ VKMAREKLC LEDGTG+EKSVQNL
Subjt:  DMDSINNQLHVPEGPITRSKAKKIQEVFTLHVQKLANAQREAENFEPKFLYNVSLASQEENGVKMAREKLCILEDGTGDEKSVQNL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTTCACTTAATCACAAGGCAGATTTGCGGCCACATTTGCATCGCAAACCTTGCTGATATGGATTCAATCAATAATCAATTGCATGTACCTGAAGGACCAATCACAAG
GAGCAAGGCAAAGAAGATACAAGAGGTTTTCACATTGCATGTTCAGAAGCTAGCAAATGCACAACGAGAGGCCGAGAATTTTGAACCCAAATTTTTGTATAATGTTAGTT
TAGCAAGTCAAGAAGAGAATGGAGTCAAGATGGCACGGGAAAAGTTGTGTATTTTGGAAGATGGCACGGGGGACGAAAAAAGTGTGCAGAATTTGTGA

mRNA sequence

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Protein sequence

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MFHLITRQICGHICIANLADMDSINNQLHVPEGPITRSKAKKIQEVFTLHVQKLANAQREAENFEPKFLYNVSLASQEENGVKMAREKLCILEDGTGDEKSVQNL

Lag0000168 (gene) of Sponge gourd (AG-4) v1 genome