; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000186 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000186
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibosomal protein
Genome locationchr4:1237881..1238394
RNA-Seq ExpressionLag0000186
SyntenyLag0000186
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR016095 - Ribosomal protein L1, 3-layer alpha/beta-sandwich
IPR023674 - Ribosomal protein L1-like
IPR028364 - Ribosomal protein L1/ribosomal biogenesis protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570486.1 Protein HIRA, partial [Cucurbita argyrosperma subsp. sororia]7.0e-3788Show/hide
Query:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGKLY
        VIKQ IP LLGPGLNKA KFPTLVTHQE LESK+NETKAMVKFQLKKVLC GV VGNV MEEKQVFQNVQMSVNFLVSLLKK+ QNVRCLYLKS MGK Y
Subjt:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGKLY

XP_022142655.1 60S ribosomal protein L10a [Momordica charantia]5.3e-3788Show/hide
Query:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGKLY
        VIKQ IP LLGPGLNKA KFPTLVTHQE LESK+NETKAMVKFQLKKVLC GV VGNV MEEKQVFQNVQMSVNFLVSLLKK+ QNVRCLYLKS MGK Y
Subjt:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGKLY

XP_022153072.1 60S ribosomal protein L10a-like [Momordica charantia]7.0e-3788Show/hide
Query:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGKLY
        VIKQ IP LLGPGLNKA KFPTLVTHQE LESK+NETKAMVKFQLKKVLC GV VGNV MEEKQVFQNVQMSVNFLVSLLKK+ QNVRCLYLKS MGK Y
Subjt:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGKLY

XP_022943718.1 60S ribosomal protein L10a [Cucurbita moschata]7.0e-3788Show/hide
Query:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGKLY
        VIKQ IP LLGPGLNKA KFPTLVTHQE LESK+NETKAMVKFQLKKVLC GV VGNV MEEKQVFQNVQMSVNFLVSLLKK+ QNVRCLYLKS MGK Y
Subjt:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGKLY

XP_022958674.1 60S ribosomal protein L10a-like [Cucurbita moschata]7.0e-3788Show/hide
Query:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGKLY
        VIKQ IP LLGPGLNKA KFPTLVTHQE LESK+NETKAMVKFQLKKVLC GV VGNV MEEKQVFQNVQMSVNFLVSLLKK+ QNVRCLYLKS MGK Y
Subjt:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGKLY

TrEMBL top hitse value%identityAlignment
A0A6J1CLJ2 Ribosomal protein2.6e-3788Show/hide
Query:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGKLY
        VIKQ IP LLGPGLNKA KFPTLVTHQE LESK+NETKAMVKFQLKKVLC GV VGNV MEEKQVFQNVQMSVNFLVSLLKK+ QNVRCLYLKS MGK Y
Subjt:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGKLY

A0A6J1DHY4 Ribosomal protein3.4e-3788Show/hide
Query:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGKLY
        VIKQ IP LLGPGLNKA KFPTLVTHQE LESK+NETKAMVKFQLKKVLC GV VGNV MEEKQVFQNVQMSVNFLVSLLKK+ QNVRCLYLKS MGK Y
Subjt:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGKLY

A0A6J1FXB0 Ribosomal protein3.4e-3788Show/hide
Query:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGKLY
        VIKQ IP LLGPGLNKA KFPTLVTHQE LESK+NETKAMVKFQLKKVLC GV VGNV MEEKQVFQNVQMSVNFLVSLLKK+ QNVRCLYLKS MGK Y
Subjt:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGKLY

A0A6J1JCI3 Ribosomal protein3.4e-3788Show/hide
Query:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGKLY
        VIKQ IP LLGPGLNKA KFPTLVTHQE LESK+NETKAMVKFQLKKVLC GV VGNV MEEKQVFQNVQMSVNFLVSLLKK+ QNVRCLYLKS MGK Y
Subjt:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGKLY

A0A6J1K725 Ribosomal protein3.4e-3788Show/hide
Query:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGKLY
        VIKQ IP LLGPGLNKA KFPTLVTHQE LESK+NETKAMVKFQLKKVLC GV VGNV MEEKQVFQNVQMSVNFLVSLLKK+ QNVRCLYLKS MGK Y
Subjt:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGKLY

SwissProt top hitse value%identityAlignment
B7F845 60S ribosomal protein L10a9.5e-3781.63Show/hide
Query:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGK
        +IKQ IP LLGPGLNKA KFPTLVTHQE LESK+NETKA VKFQLKKVLC GV VGN+ MEEKQ+ QN+QMSVNFLVSLLKK+ QNVRCLY+KS MGK
Subjt:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGK

B8B9K6 60S ribosomal protein L10a9.5e-3781.63Show/hide
Query:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGK
        +IKQ IP LLGPGLNKA KFPTLVTHQE LESK+NETKA VKFQLKKVLC GV VGN+ MEEKQ+ QN+QMSVNFLVSLLKK+ QNVRCLY+KS MGK
Subjt:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGK

P59230 60S ribosomal protein L10a-21.2e-3683.51Show/hide
Query:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMG
        VIKQ IP LLGPGLNKA KFPTLV+HQE LE+K+NETKA VKFQLKKVLC GV VGN+ MEEKQ+FQNVQMSVNFLVSLLKK+ QNVRCLYLKS MG
Subjt:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMG

P59231 60S ribosomal protein L10a-33.3e-3784.54Show/hide
Query:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMG
        VIKQ IP LLGPGLNKA KFPTLV+HQE LESK+NETKA VKFQLKKVLC GV VGN+ MEEKQ+FQNVQMSVNFLVSLLKK+ QNVRCLYLKS MG
Subjt:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMG

Q8VZB9 60S ribosomal protein L10a-13.3e-3784.54Show/hide
Query:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMG
        VIKQ IP LLGPGLNKA KFPTLV+HQE LESK+NETKA VKFQLKKVLC GV VGN+ MEEKQ+FQNVQMSVNFLVSLLKK+ QNVRCLYLKS MG
Subjt:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMG

Arabidopsis top hitse value%identityAlignment
AT1G08360.1 Ribosomal protein L1p/L10e family2.3e-3884.54Show/hide
Query:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMG
        VIKQ IP LLGPGLNKA KFPTLV+HQE LESK+NETKA VKFQLKKVLC GV VGN+ MEEKQ+FQNVQMSVNFLVSLLKK+ QNVRCLYLKS MG
Subjt:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMG

AT2G27530.1 Ribosomal protein L1p/L10e family8.8e-3883.51Show/hide
Query:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMG
        VIKQ IP LLGPGLNKA KFPTLV+HQE LE+K+NETKA VKFQLKKVLC GV VGN+ MEEKQ+FQNVQMSVNFLVSLLKK+ QNVRCLYLKS MG
Subjt:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMG

AT2G27530.2 Ribosomal protein L1p/L10e family8.8e-3883.51Show/hide
Query:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMG
        VIKQ IP LLGPGLNKA KFPTLV+HQE LE+K+NETKA VKFQLKKVLC GV VGN+ MEEKQ+FQNVQMSVNFLVSLLKK+ QNVRCLYLKS MG
Subjt:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMG

AT5G22440.1 Ribosomal protein L1p/L10e family2.3e-3884.54Show/hide
Query:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMG
        VIKQ IP LLGPGLNKA KFPTLV+HQE LESK+NETKA VKFQLKKVLC GV VGN+ MEEKQ+FQNVQMSVNFLVSLLKK+ QNVRCLYLKS MG
Subjt:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMG

AT5G22440.2 Ribosomal protein L1p/L10e family2.3e-3884.54Show/hide
Query:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMG
        VIKQ IP LLGPGLNKA KFPTLV+HQE LESK+NETKA VKFQLKKVLC GV VGN+ MEEKQ+FQNVQMSVNFLVSLLKK+ QNVRCLYLKS MG
Subjt:  VIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTATTGCATTGTTTTTCGGATTGTTGTTGTCATCAAGCAACTGATCCCTCATCTTCTAGGCCCTGGTCTTAACAAAGCAGATAAGTTCCCAACATTGGTGACACA
CCAAGAATTGCTTGAATCCAAATTGAATGAGACCAAGGCAATGGTCAAGTTTCAATTAAAGAAGGTTCTTTGCAAGGGAGTTGTCGTGGGAAATGTTGACATGGAGGAGA
AGCAAGTTTTCCAAAATGTGCAAATGAGCGTCAACTTCCTGGTTTCTTTGTTGAAAAAGAGTTGTCAGAACGTTAGGTGTCTGTACCTAAAGAGCATAATGGGCAAGTTG
TACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGTATTGCATTGTTTTTCGGATTGTTGTTGTCATCAAGCAACTGATCCCTCATCTTCTAGGCCCTGGTCTTAACAAAGCAGATAAGTTCCCAACATTGGTGACACA
CCAAGAATTGCTTGAATCCAAATTGAATGAGACCAAGGCAATGGTCAAGTTTCAATTAAAGAAGGTTCTTTGCAAGGGAGTTGTCGTGGGAAATGTTGACATGGAGGAGA
AGCAAGTTTTCCAAAATGTGCAAATGAGCGTCAACTTCCTGGTTTCTTTGTTGAAAAAGAGTTGTCAGAACGTTAGGTGTCTGTACCTAAAGAGCATAATGGGCAAGTTG
TACTAG
Protein sequenceShow/hide protein sequence
MWYCIVFRIVVVIKQLIPHLLGPGLNKADKFPTLVTHQELLESKLNETKAMVKFQLKKVLCKGVVVGNVDMEEKQVFQNVQMSVNFLVSLLKKSCQNVRCLYLKSIMGKL
Y