; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000208 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000208
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr4:1502180..1502710
RNA-Seq ExpressionLag0000208
SyntenyLag0000208
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050146.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.8e-1847.2Show/hide
Query:  RGRGRRSSKRGR-NFGAAQFNPNSSDPRTQHYGSGTPISSYGPNTRPFSGPN-MGSNLNTYYR--PQSDNTT----GRGLLGTGSQIGSGSIHGSGQNYS
        RGRGRR    G  NF +   +PNSS+ R  ++ SG+     G N    + PN    N N + R  P S  T+     RG++G+    G         N+ 
Subjt:  RGRGRRSSKRGR-NFGAAQFNPNSSDPRTQHYGSGTPISSYGPNTRPFSGPN-MGSNLNTYYR--PQSDNTT----GRGLLGTGSQIGSGSIHGSGQNYS

Query:  NGGRISCQICSKFGHSALDCYNRMNFSYQGRHPSAQLAAMAVNSMNPEYSPDNSNNFWLSD
          GRI CQIC K GH ALDCYNRMNFSYQGRHP +QLAAM VNSMN + S +N+NNFWL D
Subjt:  NGGRISCQICSKFGHSALDCYNRMNFSYQGRHPSAQLAAMAVNSMNPEYSPDNSNNFWLSD

KAA0067173.1 retrotransposon protein [Cucumis melo var. makuwa]6.3e-1640.54Show/hide
Query:  MAAFRLNFSNKNTSYRGRGRR--------------SSKRGRNFGAAQFNPNSSDPRTQHYGSGTPISSYGPNTR---PFSGPNMGSNLNTYYRPQSDNTT
        MAAF     +++ S RGRGRR              SS RG NF +      S++        GT  + + PN     PF  P       +++ P   N  
Subjt:  MAAFRLNFSNKNTSYRGRGRR--------------SSKRGRNFGAAQFNPNSSDPRTQHYGSGTPISSYGPNTR---PFSGPNMGSNLNTYYRPQSDNTT

Query:  GRGLLGTGSQIGSGSIHGSGQNYSNGGRISCQICSKFGHSALDCYNRMNFSYQGRHPSAQLAAMAVNSMNPEYSPDNSNNFWLSD
         RG++G+    G      +   Y+  GRI CQIC K  H ALDCYN MNFSYQ RH  +QLAAMAVNSMN + S +N+NNFWLSD
Subjt:  GRGLLGTGSQIGSGSIHGSGQNYSNGGRISCQICSKFGHSALDCYNRMNFSYQGRHPSAQLAAMAVNSMNPEYSPDNSNNFWLSD

KAA8519612.1 hypothetical protein F0562_013943 [Nyssa sinensis]8.8e-1038.13Show/hide
Query:  NTRPFSGPNMGSNL------NTYYRPQSDNTTGRG---LLGTGSQIGS-GSIHG-----------------SGQNYSNGGRISCQICSKFGHSALDCYNR
        +T PF G  M SN       N  Y P + ++ GRG   L   G ++ S G  H                  S Q  +N   + CQIC+K GHSALDCY+R
Subjt:  NTRPFSGPNMGSNL------NTYYRPQSDNTTGRG---LLGTGSQIGS-GSIHG-----------------SGQNYSNGGRISCQICSKFGHSALDCYNR

Query:  MNFSYQGRHPSAQLAAMAVNSMNPEYSPDNSN-NFWLSD
        ++FSYQG+HPS QL AM+  + N  Y    +N N+W +D
Subjt:  MNFSYQGRHPSAQLAAMAVNSMNPEYSPDNSN-NFWLSD

TYK06402.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.8e-1847.2Show/hide
Query:  RGRGRRSSKRGR-NFGAAQFNPNSSDPRTQHYGSGTPISSYGPNTRPFSGPN-MGSNLNTYYR--PQSDNTT----GRGLLGTGSQIGSGSIHGSGQNYS
        RGRGRR    G  NF +   +PNSS+ R  ++ SG+     G N    + PN    N N + R  P S  T+     RG++G+    G         N+ 
Subjt:  RGRGRRSSKRGR-NFGAAQFNPNSSDPRTQHYGSGTPISSYGPNTRPFSGPN-MGSNLNTYYR--PQSDNTT----GRGLLGTGSQIGSGSIHGSGQNYS

Query:  NGGRISCQICSKFGHSALDCYNRMNFSYQGRHPSAQLAAMAVNSMNPEYSPDNSNNFWLSD
          GRI CQIC K GH ALDCYNRMNFSYQGRHP +QLAAM VNSMN + S +N+NNFWL D
Subjt:  NGGRISCQICSKFGHSALDCYNRMNFSYQGRHPSAQLAAMAVNSMNPEYSPDNSNNFWLSD

XP_016902697.1 PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo]8.2e-1641.76Show/hide
Query:  RGRGRR--------------SSKRGRNFGAAQFNPNSSDPRTQHYGSGTPISSYGPNTR---PFSGPNMGSNLNTYYRPQSDNTTGRGLLGTGSQIGSGS
        RGRGRR              SS RG NF +      S++        GT  + + PN     PF  P   SN  + +  Q      RG++  GS +  G 
Subjt:  RGRGRR--------------SSKRGRNFGAAQFNPNSSDPRTQHYGSGTPISSYGPNTR---PFSGPNMGSNLNTYYRPQSDNTTGRGLLGTGSQIGSGS

Query:  IHGSGQNYSNGGRISCQICSKFGHSALDCYNRMNFSYQGRHPSAQLAAMAVNSMNPEYSPDNSNNFWLSD
              N    GRI CQIC K GH ALDCYNRMNFSYQG+HP +QL AMA+NSMN +   +N+NNF LSD
Subjt:  IHGSGQNYSNGGRISCQICSKFGHSALDCYNRMNFSYQGRHPSAQLAAMAVNSMNPEYSPDNSNNFWLSD

TrEMBL top hitse value%identityAlignment
A0A1S4E394 uncharacterized protein LOC1079918254.0e-1641.76Show/hide
Query:  RGRGRR--------------SSKRGRNFGAAQFNPNSSDPRTQHYGSGTPISSYGPNTR---PFSGPNMGSNLNTYYRPQSDNTTGRGLLGTGSQIGSGS
        RGRGRR              SS RG NF +      S++        GT  + + PN     PF  P   SN  + +  Q      RG++  GS +  G 
Subjt:  RGRGRR--------------SSKRGRNFGAAQFNPNSSDPRTQHYGSGTPISSYGPNTR---PFSGPNMGSNLNTYYRPQSDNTTGRGLLGTGSQIGSGS

Query:  IHGSGQNYSNGGRISCQICSKFGHSALDCYNRMNFSYQGRHPSAQLAAMAVNSMNPEYSPDNSNNFWLSD
              N    GRI CQIC K GH ALDCYNRMNFSYQG+HP +QL AMA+NSMN +   +N+NNF LSD
Subjt:  IHGSGQNYSNGGRISCQICSKFGHSALDCYNRMNFSYQGRHPSAQLAAMAVNSMNPEYSPDNSNNFWLSD

A0A5A7U7J4 Putative mitochondrial protein8.6e-1947.2Show/hide
Query:  RGRGRRSSKRGR-NFGAAQFNPNSSDPRTQHYGSGTPISSYGPNTRPFSGPN-MGSNLNTYYR--PQSDNTT----GRGLLGTGSQIGSGSIHGSGQNYS
        RGRGRR    G  NF +   +PNSS+ R  ++ SG+     G N    + PN    N N + R  P S  T+     RG++G+    G         N+ 
Subjt:  RGRGRRSSKRGR-NFGAAQFNPNSSDPRTQHYGSGTPISSYGPNTRPFSGPN-MGSNLNTYYR--PQSDNTT----GRGLLGTGSQIGSGSIHGSGQNYS

Query:  NGGRISCQICSKFGHSALDCYNRMNFSYQGRHPSAQLAAMAVNSMNPEYSPDNSNNFWLSD
          GRI CQIC K GH ALDCYNRMNFSYQGRHP +QLAAM VNSMN + S +N+NNFWL D
Subjt:  NGGRISCQICSKFGHSALDCYNRMNFSYQGRHPSAQLAAMAVNSMNPEYSPDNSNNFWLSD

A0A5A7VGG0 Retrotransposon protein3.1e-1640.54Show/hide
Query:  MAAFRLNFSNKNTSYRGRGRR--------------SSKRGRNFGAAQFNPNSSDPRTQHYGSGTPISSYGPNTR---PFSGPNMGSNLNTYYRPQSDNTT
        MAAF     +++ S RGRGRR              SS RG NF +      S++        GT  + + PN     PF  P       +++ P   N  
Subjt:  MAAFRLNFSNKNTSYRGRGRR--------------SSKRGRNFGAAQFNPNSSDPRTQHYGSGTPISSYGPNTR---PFSGPNMGSNLNTYYRPQSDNTT

Query:  GRGLLGTGSQIGSGSIHGSGQNYSNGGRISCQICSKFGHSALDCYNRMNFSYQGRHPSAQLAAMAVNSMNPEYSPDNSNNFWLSD
         RG++G+    G      +   Y+  GRI CQIC K  H ALDCYN MNFSYQ RH  +QLAAMAVNSMN + S +N+NNFWLSD
Subjt:  GRGLLGTGSQIGSGSIHGSGQNYSNGGRISCQICSKFGHSALDCYNRMNFSYQGRHPSAQLAAMAVNSMNPEYSPDNSNNFWLSD

A0A5B7C9B1 Retrotran_gag_3 domain-containing protein8.6e-1147.96Show/hide
Query:  NTYYRPQSDNTTGRGLLGTGSQIGSGSIHGSGQNY-SNGGRISCQICSKFGHSALDCYNRMNFSYQGRHPSAQLAAMAVNSMNPEYSPDNSNNFWLSD
        N  Y  QS NT      G  S    GS  GS  ++ SN  +ISCQIC+K GH ALDCY+RM++SYQGRHP  QL AMA        +P    N WL+D
Subjt:  NTYYRPQSDNTTGRGLLGTGSQIGSGSIHGSGQNY-SNGGRISCQICSKFGHSALDCYNRMNFSYQGRHPSAQLAAMAVNSMNPEYSPDNSNNFWLSD

A0A5D3C579 Putative mitochondrial protein8.6e-1947.2Show/hide
Query:  RGRGRRSSKRGR-NFGAAQFNPNSSDPRTQHYGSGTPISSYGPNTRPFSGPN-MGSNLNTYYR--PQSDNTT----GRGLLGTGSQIGSGSIHGSGQNYS
        RGRGRR    G  NF +   +PNSS+ R  ++ SG+     G N    + PN    N N + R  P S  T+     RG++G+    G         N+ 
Subjt:  RGRGRRSSKRGR-NFGAAQFNPNSSDPRTQHYGSGTPISSYGPNTRPFSGPN-MGSNLNTYYR--PQSDNTT----GRGLLGTGSQIGSGSIHGSGQNYS

Query:  NGGRISCQICSKFGHSALDCYNRMNFSYQGRHPSAQLAAMAVNSMNPEYSPDNSNNFWLSD
          GRI CQIC K GH ALDCYNRMNFSYQGRHP +QLAAM VNSMN + S +N+NNFWL D
Subjt:  NGGRISCQICSKFGHSALDCYNRMNFSYQGRHPSAQLAAMAVNSMNPEYSPDNSNNFWLSD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCGTTCAGGCTGAACTTCTCCAATAAGAATACCAGCTACAGAGGGCGAGGAAGACGATCTTCAAAAAGGGGGCGAAATTTTGGTGCGGCGCAATTCAACCCTAA
TTCTTCTGACCCACGCACGCAACATTATGGATCAGGAACACCGATTTCTTCATATGGGCCAAACACAAGGCCATTTTCTGGGCCTAATATGGGCTCTAACTTAAATACTT
ACTACAGGCCTCAAAGTGACAACACAACTGGGCGAGGTCTTCTTGGAACGGGCTCTCAAATCGGATCCGGGTCTATTCACGGGTCTGGGCAAAATTACTCAAATGGAGGT
CGAATTTCTTGCCAAATATGTTCAAAATTCGGGCACAGTGCACTTGATTGTTATAATCGGATGAATTTCTCTTATCAAGGTCGCCATCCTTCGGCTCAATTGGCAGCTAT
GGCGGTAAACTCAATGAATCCTGAATATTCTCCTGATAACTCTAATAATTTTTGGTTATCTGACAGGGTGCAATGTCCACATGACAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCGTTCAGGCTGAACTTCTCCAATAAGAATACCAGCTACAGAGGGCGAGGAAGACGATCTTCAAAAAGGGGGCGAAATTTTGGTGCGGCGCAATTCAACCCTAA
TTCTTCTGACCCACGCACGCAACATTATGGATCAGGAACACCGATTTCTTCATATGGGCCAAACACAAGGCCATTTTCTGGGCCTAATATGGGCTCTAACTTAAATACTT
ACTACAGGCCTCAAAGTGACAACACAACTGGGCGAGGTCTTCTTGGAACGGGCTCTCAAATCGGATCCGGGTCTATTCACGGGTCTGGGCAAAATTACTCAAATGGAGGT
CGAATTTCTTGCCAAATATGTTCAAAATTCGGGCACAGTGCACTTGATTGTTATAATCGGATGAATTTCTCTTATCAAGGTCGCCATCCTTCGGCTCAATTGGCAGCTAT
GGCGGTAAACTCAATGAATCCTGAATATTCTCCTGATAACTCTAATAATTTTTGGTTATCTGACAGGGTGCAATGTCCACATGACAAATGA
Protein sequenceShow/hide protein sequence
MAAFRLNFSNKNTSYRGRGRRSSKRGRNFGAAQFNPNSSDPRTQHYGSGTPISSYGPNTRPFSGPNMGSNLNTYYRPQSDNTTGRGLLGTGSQIGSGSIHGSGQNYSNGG
RISCQICSKFGHSALDCYNRMNFSYQGRHPSAQLAAMAVNSMNPEYSPDNSNNFWLSDRVQCPHDK