; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000236 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000236
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr4:1906850..1909275
RNA-Seq ExpressionLag0000236
SyntenyLag0000236
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PNY15174.1 ribonuclease H, partial [Trifolium pratense]2.5e-1334.62Show/hide
Query:  KIHPMAEEEEGIEVDVDRQAATITGKDLEF--SLIGKLLAPQIIVGDVMRRNFKAAWNIPNGLTVEKLSTNLFLFALRSEEEKTRILRRGPWLFDKFMLV
        K +P+ +EEE  E+ VD    T+  +D  F  SL+GKL         + ++    +W + N + ++ LS NLFLF   S+ +   +LR GPW FD+ +++
Subjt:  KIHPMAEEEEGIEVDVDRQAATITGKDLEF--SLIGKLLAPQIIVGDVMRRNFKAAWNIPNGLTVEKLSTNLFLFALRSEEEKTRILRRGPWLFDKFMLV

Query:  LSK------PIPLVHF--------YDLSMDLHNSSMAGRLRNAFGQFEEFDNGGRGHK--ESLRVRVTIDISKALRRCVKVN
        L +      P  L  F        YDL + L + +MA RL N  GQF E D+   GH+  + LRV+V+ID+ K L+R   +N
Subjt:  LSK------PIPLVHF--------YDLSMDLHNSSMAGRLRNAFGQFEEFDNGGRGHK--ESLRVRVTIDISKALRRCVKVN

TXG62353.1 hypothetical protein EZV62_013716 [Acer yangbiense]5.5e-1331.41Show/hide
Query:  KDLEFSLIGKLLAPQIIVGDVMRRNFKAAWNIPNGLTVEKLSTNLFLFALRSEEEKTRILRRGPWLFDKFMLVLSKP--------IPL------VHFYDL
        + L   L+GK+LA ++I  +V RR     W +   +T+E +  N+F F  +++ ++ R+L RGPW FD F++VL+ P        +P       V  +++
Subjt:  KDLEFSLIGKLLAPQIIVGDVMRRNFKAAWNIPNGLTVEKLSTNLFLFALRSEEEKTRILRRGPWLFDKFMLVLSKP--------IPL------VHFYDL

Query:  SMDLHNSSMAGRLRNAFGQFEEFDNGGRGHKES--LRVRVTIDISKALRRCVKVNL
        S+      +   L +  G  EE D G  G  +   LRVRVTI + + LRR ++V++
Subjt:  SMDLHNSSMAGRLRNAFGQFEEFDNGGRGHKES--LRVRVTIDISKALRRCVKVNL

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]1.3e-2237.99Show/hide
Query:  MAEEEEGIEVDVDRQAATITGKDLEFSLIGKLLAPQIIVGDVMRRNFKAAWNIP-NGLTVEKLSTNLFLFALRSEEEKTRILRRGPWLFDKFMLVLSKPI
        +  EE+ I VD+D  A   TGK LE SLI KLL+ + I   V++   K AW +     +V+ +  N+FLF      ++ RILR GPW FD+ ++++  P+
Subjt:  MAEEEEGIEVDVDRQAATITGKDLEFSLIGKLLAPQIIVGDVMRRNFKAAWNIP-NGLTVEKLSTNLFLFALRSEEEKTRILRRGPWLFDKFMLVLSKPI

Query:  PL--------------VHFYDLSMDLHNSSMAGRLRNAFGQFEEFDNGGRGH--KESLRVRVTIDISKALRRCVKVNLD
         L              VHF+DLS+   N +MA RL NA G FE+ ++          LRVRV  D+ K L R +K+NLD
Subjt:  PL--------------VHFYDLSMDLHNSSMAGRLRNAFGQFEEFDNGGRGH--KESLRVRVTIDISKALRRCVKVNLD

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]4.3e-2641.01Show/hide
Query:  MAEEEEGIEVDVDRQAATITGKDLEFSLIGKLLAPQIIVGDVMRRNFKAAWNIPNGLTVEKLSTNLFLFALRSEEEKTRILRRGPWLFDKFMLVLSKPIP
        +  EE+ I +DVD  A  +  + L +SL+GKLLA +II  DV+ R    AW + + LTVE +  NLFLF    E +  R+++ GPW FDK ++VL KP  
Subjt:  MAEEEEGIEVDVDRQAATITGKDLEFSLIGKLLAPQIIVGDVMRRNFKAAWNIPNGLTVEKLSTNLFLFALRSEEEKTRILRRGPWLFDKFMLVLSKPIP

Query:  --------------LVHFYDLSMDLHNSSMAGRLRNAFGQFEEFDNGGRGHK--ESLRVRVTIDISKALRRCVKVNLD
                       +H +DL M   N +MA RL NA G F + D   +G     SLR+RV IDI+K LRR +K+N+D
Subjt:  --------------LVHFYDLSMDLHNSSMAGRLRNAFGQFEEFDNGGRGHK--ESLRVRVTIDISKALRRCVKVNLD

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]7.1e-2138.67Show/hide
Query:  MAEEEEGIEVDVDRQAATITGKDLEFSLIGKLLAPQIIVGDVMRRNFKAAWNIP-NGLTVEKLSTNLFLFALRSEEEKTRILRRGPWLFDKFMLVLSKPI
        +  EEE   +DVD  A   TG  LE  L+GKL   + I   VM+   + AW +  N   V+ L  NLFLF+     ++ +I + GPW FD+ +++++KP+
Subjt:  MAEEEEGIEVDVDRQAATITGKDLEFSLIGKLLAPQIIVGDVMRRNFKAAWNIP-NGLTVEKLSTNLFLFALRSEEEKTRILRRGPWLFDKFMLVLSKPI

Query:  PL--------------VHFYDLSMDLHNSSMAGRLRNAFGQFEEFD----NGGRGHKESLRVRVTIDISKALRRCVKVNLD
         L              V F+DL +      MA RL NA G FEE D    N   G   +LRVRV +DISK LRR +K+NLD
Subjt:  PL--------------VHFYDLSMDLHNSSMAGRLRNAFGQFEEFD----NGGRGHKESLRVRVTIDISKALRRCVKVNLD

TrEMBL top hitse value%identityAlignment
A0A2K3PIT6 Ribonuclease H (Fragment)1.2e-1334.62Show/hide
Query:  KIHPMAEEEEGIEVDVDRQAATITGKDLEF--SLIGKLLAPQIIVGDVMRRNFKAAWNIPNGLTVEKLSTNLFLFALRSEEEKTRILRRGPWLFDKFMLV
        K +P+ +EEE  E+ VD    T+  +D  F  SL+GKL         + ++    +W + N + ++ LS NLFLF   S+ +   +LR GPW FD+ +++
Subjt:  KIHPMAEEEEGIEVDVDRQAATITGKDLEF--SLIGKLLAPQIIVGDVMRRNFKAAWNIPNGLTVEKLSTNLFLFALRSEEEKTRILRRGPWLFDKFMLV

Query:  LSK------PIPLVHF--------YDLSMDLHNSSMAGRLRNAFGQFEEFDNGGRGHK--ESLRVRVTIDISKALRRCVKVN
        L +      P  L  F        YDL + L + +MA RL N  GQF E D+   GH+  + LRV+V+ID+ K L+R   +N
Subjt:  LSK------PIPLVHF--------YDLSMDLHNSSMAGRLRNAFGQFEEFDNGGRGHK--ESLRVRVTIDISKALRRCVKVN

A0A5C7HYU7 CCHC-type domain-containing protein2.7e-1331.41Show/hide
Query:  KDLEFSLIGKLLAPQIIVGDVMRRNFKAAWNIPNGLTVEKLSTNLFLFALRSEEEKTRILRRGPWLFDKFMLVLSKP--------IPL------VHFYDL
        + L   L+GK+LA ++I  +V RR     W +   +T+E +  N+F F  +++ ++ R+L RGPW FD F++VL+ P        +P       V  +++
Subjt:  KDLEFSLIGKLLAPQIIVGDVMRRNFKAAWNIPNGLTVEKLSTNLFLFALRSEEEKTRILRRGPWLFDKFMLVLSKP--------IPL------VHFYDL

Query:  SMDLHNSSMAGRLRNAFGQFEEFDNGGRGHKES--LRVRVTIDISKALRRCVKVNL
        S+      +   L +  G  EE D G  G  +   LRVRVTI + + LRR ++V++
Subjt:  SMDLHNSSMAGRLRNAFGQFEEFDNGGRGHKES--LRVRVTIDISKALRRCVKVNL

A0A6J1BSZ1 uncharacterized protein LOC1110054816.3e-2337.99Show/hide
Query:  MAEEEEGIEVDVDRQAATITGKDLEFSLIGKLLAPQIIVGDVMRRNFKAAWNIP-NGLTVEKLSTNLFLFALRSEEEKTRILRRGPWLFDKFMLVLSKPI
        +  EE+ I VD+D  A   TGK LE SLI KLL+ + I   V++   K AW +     +V+ +  N+FLF      ++ RILR GPW FD+ ++++  P+
Subjt:  MAEEEEGIEVDVDRQAATITGKDLEFSLIGKLLAPQIIVGDVMRRNFKAAWNIP-NGLTVEKLSTNLFLFALRSEEEKTRILRRGPWLFDKFMLVLSKPI

Query:  PL--------------VHFYDLSMDLHNSSMAGRLRNAFGQFEEFDNGGRGH--KESLRVRVTIDISKALRRCVKVNLD
         L              VHF+DLS+   N +MA RL NA G FE+ ++          LRVRV  D+ K L R +K+NLD
Subjt:  PL--------------VHFYDLSMDLHNSSMAGRLRNAFGQFEEFDNGGRGH--KESLRVRVTIDISKALRRCVKVNLD

A0A6J1DU55 uncharacterized protein LOC1110231352.1e-2641.01Show/hide
Query:  MAEEEEGIEVDVDRQAATITGKDLEFSLIGKLLAPQIIVGDVMRRNFKAAWNIPNGLTVEKLSTNLFLFALRSEEEKTRILRRGPWLFDKFMLVLSKPIP
        +  EE+ I +DVD  A  +  + L +SL+GKLLA +II  DV+ R    AW + + LTVE +  NLFLF    E +  R+++ GPW FDK ++VL KP  
Subjt:  MAEEEEGIEVDVDRQAATITGKDLEFSLIGKLLAPQIIVGDVMRRNFKAAWNIPNGLTVEKLSTNLFLFALRSEEEKTRILRRGPWLFDKFMLVLSKPIP

Query:  --------------LVHFYDLSMDLHNSSMAGRLRNAFGQFEEFDNGGRGHK--ESLRVRVTIDISKALRRCVKVNLD
                       +H +DL M   N +MA RL NA G F + D   +G     SLR+RV IDI+K LRR +K+N+D
Subjt:  --------------LVHFYDLSMDLHNSSMAGRLRNAFGQFEEFDNGGRGHK--ESLRVRVTIDISKALRRCVKVNLD

A0A6J1DX30 uncharacterized protein LOC1110248743.5e-2138.67Show/hide
Query:  MAEEEEGIEVDVDRQAATITGKDLEFSLIGKLLAPQIIVGDVMRRNFKAAWNIP-NGLTVEKLSTNLFLFALRSEEEKTRILRRGPWLFDKFMLVLSKPI
        +  EEE   +DVD  A   TG  LE  L+GKL   + I   VM+   + AW +  N   V+ L  NLFLF+     ++ +I + GPW FD+ +++++KP+
Subjt:  MAEEEEGIEVDVDRQAATITGKDLEFSLIGKLLAPQIIVGDVMRRNFKAAWNIP-NGLTVEKLSTNLFLFALRSEEEKTRILRRGPWLFDKFMLVLSKPI

Query:  PL--------------VHFYDLSMDLHNSSMAGRLRNAFGQFEEFD----NGGRGHKESLRVRVTIDISKALRRCVKVNLD
         L              V F+DL +      MA RL NA G FEE D    N   G   +LRVRV +DISK LRR +K+NLD
Subjt:  PL--------------VHFYDLSMDLHNSSMAGRLRNAFGQFEEFD----NGGRGHKESLRVRVTIDISKALRRCVKVNLD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGACCACAGATCATGTCCTTTCTCAGTGTTCGAGGGATCGGGAGGTTTGGGAACTTCTATTTCCCACAATGAGGGTGAATCAATGGGGTCTTTTGGATATTAAAGA
ATGCTGGTTGAGCTTTGCTGACAGTCCGAGGCAGATATTAGAGCGTATTTGTGTAGGGGCCTGGACAATTTGGAATGACAGGAATAACTTGACTCATCATCGTCAAATCC
CAAGTCCATCGATTAGAAGTGAATGGATAAATGAATATCATGAGTTGGGTCTTTCTTCGTTGCCATTTTTATGGCTAGGAAACTATCCTGAGTGGGTGGAAAGGTTATCG
CTACCGGAGCGAGTTGTTGTAAATACACATAAATACACTGTAATTAACGTATTTACAGGTACCATTCTCCGAGTTTTTCAAGTTAATCAGAATCTTGCTACATTAATTTT
TATTCCAAATGGCTTTCGAAGACATGATGGCAAATTGGAAAAAATTCACCCTATGGCTGAAGAAGAAGAAGGAATAGAGGTGGATGTAGATCGACAAGCGGCGACGATAA
CTGGGAAAGATTTGGAATTCAGTTTGATAGGAAAATTGTTAGCGCCTCAGATTATTGTTGGTGATGTGATGAGGAGAAATTTTAAGGCCGCTTGGAACATTCCAAATGGT
CTCACAGTGGAAAAGCTCAGTACGAATTTGTTCCTCTTTGCACTCCGTTCGGAAGAAGAAAAAACTCGGATTTTGCGACGAGGCCCATGGTTATTTGATAAATTTATGTT
GGTTTTGTCCAAACCAATCCCTTTGGTTCATTTCTATGACCTCTCCATGGATCTACACAATTCTTCAATGGCCGGGAGATTGAGGAACGCATTTGGTCAATTCGAGGAGT
TTGACAATGGTGGACGAGGACATAAGGAGAGCCTTCGGGTCAGAGTCACCATTGATATCTCTAAAGCGCTTCGTCGGTGTGTCAAAGTCAATCTGGATGCTGTTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGACCACAGATCATGTCCTTTCTCAGTGTTCGAGGGATCGGGAGGTTTGGGAACTTCTATTTCCCACAATGAGGGTGAATCAATGGGGTCTTTTGGATATTAAAGA
ATGCTGGTTGAGCTTTGCTGACAGTCCGAGGCAGATATTAGAGCGTATTTGTGTAGGGGCCTGGACAATTTGGAATGACAGGAATAACTTGACTCATCATCGTCAAATCC
CAAGTCCATCGATTAGAAGTGAATGGATAAATGAATATCATGAGTTGGGTCTTTCTTCGTTGCCATTTTTATGGCTAGGAAACTATCCTGAGTGGGTGGAAAGGTTATCG
CTACCGGAGCGAGTTGTTGTAAATACACATAAATACACTGTAATTAACGTATTTACAGGTACCATTCTCCGAGTTTTTCAAGTTAATCAGAATCTTGCTACATTAATTTT
TATTCCAAATGGCTTTCGAAGACATGATGGCAAATTGGAAAAAATTCACCCTATGGCTGAAGAAGAAGAAGGAATAGAGGTGGATGTAGATCGACAAGCGGCGACGATAA
CTGGGAAAGATTTGGAATTCAGTTTGATAGGAAAATTGTTAGCGCCTCAGATTATTGTTGGTGATGTGATGAGGAGAAATTTTAAGGCCGCTTGGAACATTCCAAATGGT
CTCACAGTGGAAAAGCTCAGTACGAATTTGTTCCTCTTTGCACTCCGTTCGGAAGAAGAAAAAACTCGGATTTTGCGACGAGGCCCATGGTTATTTGATAAATTTATGTT
GGTTTTGTCCAAACCAATCCCTTTGGTTCATTTCTATGACCTCTCCATGGATCTACACAATTCTTCAATGGCCGGGAGATTGAGGAACGCATTTGGTCAATTCGAGGAGT
TTGACAATGGTGGACGAGGACATAAGGAGAGCCTTCGGGTCAGAGTCACCATTGATATCTCTAAAGCGCTTCGTCGGTGTGTCAAAGTCAATCTGGATGCTGTTCTTTGA
Protein sequenceShow/hide protein sequence
METTDHVLSQCSRDREVWELLFPTMRVNQWGLLDIKECWLSFADSPRQILERICVGAWTIWNDRNNLTHHRQIPSPSIRSEWINEYHELGLSSLPFLWLGNYPEWVERLS
LPERVVVNTHKYTVINVFTGTILRVFQVNQNLATLIFIPNGFRRHDGKLEKIHPMAEEEEGIEVDVDRQAATITGKDLEFSLIGKLLAPQIIVGDVMRRNFKAAWNIPNG
LTVEKLSTNLFLFALRSEEEKTRILRRGPWLFDKFMLVLSKPIPLVHFYDLSMDLHNSSMAGRLRNAFGQFEEFDNGGRGHKESLRVRVTIDISKALRRCVKVNLDAVL