; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000245 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000245
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr4:2141916..2147654
RNA-Seq ExpressionLag0000245
SyntenyLag0000245
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0009059 - macromolecule biosynthetic process (biological process)
GO:0034654 - nucleobase-containing compound biosynthetic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8661092.1 DNA-directed RNA polymerase V subunit 5C-like [Hibiscus syriacus]5.1e-4458.9Show/hide
Query:  GGQYNHGTVDYVSKWVEAIACHQNDAKTV----------SWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWSFRLDEALWAYRTTYNTPLGMSPY
        G  Y    VDYVSKWVEAIA  +ND+KTV            I  +Y PQ NGQAE+SNREIK ILEKVV+P RKDWS +LDEALWAYRT++ TPLGMSP+
Subjt:  GGQYNHGTVDYVSKWVEAIACHQNDAKTV----------SWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWSFRLDEALWAYRTTYNTPLGMSPY

Query:  RLVYGKASHLPSELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKMKERATEE
        +LVYGKA HLP ELEHK +WA+K+LNFD       R+L+LNE++EFR  +YE A++ +  T++
Subjt:  RLVYGKASHLPSELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKMKERATEE

PIN11732.1 DNA-directed DNA polymerase [Handroanthus impetiginosus]4.3e-4361.18Show/hide
Query:  GGQYNHGTVDYVSKWVEAIACHQNDAKTVSWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWSFRLDEALWAYRTTYNTPLGMSPYRLVYGKASHL
        G  Y     DYVSKWVE +A   ND+K V  I+  Y PQ +GQ EVSNREIK ILEK V  +RKDWS RLDEALWAYRT + TP+GMSPY LV+GKA HL
Subjt:  GGQYNHGTVDYVSKWVEAIACHQNDAKTVSWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWSFRLDEALWAYRTTYNTPLGMSPYRLVYGKASHL

Query:  PSELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKMKERATE
        P ELEH  +WA++KLNFD+      R+LQLNEL+EFR  SYENAK+ +  T+
Subjt:  PSELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKMKERATE

RVW59036.1 hypothetical protein CK203_106734 [Vitis vinifera]7.4e-4362.76Show/hide
Query:  VDYVSKWVEAIACHQNDAKTVSWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWSFRLDEALWAYRTTYNTPLGMSPYRLVYGKASHLPSELEHKT
        VDYVSKWVEA A   NDAK    IT  Y PQANGQAE+SNREIK+ILEK V+ +RKDW+ +LD+ALWAY T + TP+GMSPYRLV+GKA HLP ELEH+ 
Subjt:  VDYVSKWVEAIACHQNDAKTVSWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWSFRLDEALWAYRTTYNTPLGMSPYRLVYGKASHLPSELEHKT

Query:  FWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKMKERATEE
        +W +KK NFDL      R+LQLNE++EFR  +YENAK+ +  T++
Subjt:  FWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKMKERATEE

XP_023521407.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111785222 [Cucurbita pepo subsp. pepo]8.7e-4452.85Show/hide
Query:  GGQYNHGTVDYVSKWVEAIACHQNDAKTV-----------------------------------------SWITASYLPQANGQAEVSNREIKSILEKVV
        G  Y    VDYVSKWVEAIAC  ND KTV                                           +   Y PQ NGQAEV N EIKSILEKVV
Subjt:  GGQYNHGTVDYVSKWVEAIACHQNDAKTV-----------------------------------------SWITASYLPQANGQAEVSNREIKSILEKVV

Query:  HPSRKDWSFRLDEALWAYRTTYNTPLGMSPYRLVYGKASHLPSELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKMKERATE
         P+RKDWS +LD+A+WAYRT + TPLGMSPY+LV+GKA HLP ELEHK FWALKKLNFD +    +R +QLNELEEFR  +YENAKM +  T+
Subjt:  HPSRKDWSFRLDEALWAYRTTYNTPLGMSPYRLVYGKASHLPSELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKMKERATE

XP_028785069.1 uncharacterized protein LOC114740981 [Prosopis alba]5.7e-4352.31Show/hide
Query:  VDYVSKWVEAIACHQNDAKTV-----------------------------------------SWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWS
        VDYVSKWVEA AC  +DAKTV                                           +T +Y PQ+NGQAE+SNREIKSILEKVV  +RKDWS
Subjt:  VDYVSKWVEAIACHQNDAKTV-----------------------------------------SWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWS

Query:  FRLDEALWAYRTTYNTPLGMSPYRLVYGKASHLPSELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKM-KERATEEEEVPITPE
         +LD+ALWAYRT Y TP+GMSPYRLV+GKA HLP ELEH  +WA+KKLNFD     A R+LQLNELEEFR  +YE+A++ KER  +  +  I P+
Subjt:  FRLDEALWAYRTTYNTPLGMSPYRLVYGKASHLPSELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKM-KERATEEEEVPITPE

TrEMBL top hitse value%identityAlignment
A0A2G9H2I8 DNA-directed DNA polymerase2.1e-4361.18Show/hide
Query:  GGQYNHGTVDYVSKWVEAIACHQNDAKTVSWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWSFRLDEALWAYRTTYNTPLGMSPYRLVYGKASHL
        G  Y     DYVSKWVE +A   ND+K V  I+  Y PQ +GQ EVSNREIK ILEK V  +RKDWS RLDEALWAYRT + TP+GMSPY LV+GKA HL
Subjt:  GGQYNHGTVDYVSKWVEAIACHQNDAKTVSWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWSFRLDEALWAYRTTYNTPLGMSPYRLVYGKASHL

Query:  PSELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKMKERATE
        P ELEH  +WA++KLNFD+      R+LQLNEL+EFR  SYENAK+ +  T+
Subjt:  PSELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKMKERATE

A0A438FGE3 Uncharacterized protein3.6e-4362.76Show/hide
Query:  VDYVSKWVEAIACHQNDAKTVSWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWSFRLDEALWAYRTTYNTPLGMSPYRLVYGKASHLPSELEHKT
        VDYVSKWVEA A   NDAK    IT  Y PQANGQAE+SNREIK+ILEK V+ +RKDW+ +LD+ALWAY T + TP+GMSPYRLV+GKA HLP ELEH+ 
Subjt:  VDYVSKWVEAIACHQNDAKTVSWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWSFRLDEALWAYRTTYNTPLGMSPYRLVYGKASHLPSELEHKT

Query:  FWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKMKERATEE
        +W +KK NFDL      R+LQLNE++EFR  +YENAK+ +  T++
Subjt:  FWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKMKERATEE

A0A438HB08 Retrovirus-related Pol polyprotein from transposon 17.67.5e-4155.29Show/hide
Query:  CWGEE-------RGGGQYNHGTVDYVSKWVEAIACHQNDAKTV----SWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWSFRLDEALWAYRTTYN
        CWG +         G  Y    VDYVSKWVEA+AC  ND K        ++  Y PQ NGQAE++NREIK IL KVV+ +RKDWS +L +ALWAYRT Y 
Subjt:  CWGEE-------RGGGQYNHGTVDYVSKWVEAIACHQNDAKTV----SWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWSFRLDEALWAYRTTYN

Query:  TPLGMSPYRLVYGKASHLPSELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYE---NAKMKER
        T LGMSPYR+VYGKA HLP ELEH+ +WA+KK+NFDL +  A R   LNELE +R  SYE   NA+ K +
Subjt:  TPLGMSPYRLVYGKASHLPSELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYE---NAKMKER

A0A5E4G4K7 PREDICTED: LOW QUALITY PROTEIN (Fragment)2.2e-4050.27Show/hide
Query:  VDYVSKWVEAIACHQNDAKTV-----------------------------------------SWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWS
        VDYVSKWVEAIA   ND K V                                           ++  Y PQ +GQ E+SNREIK ILEKVV+ +RKDW+
Subjt:  VDYVSKWVEAIACHQNDAKTV-----------------------------------------SWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWS

Query:  FRLDEALWAYRTTYNTPLGMSPYRLVYGKASHLPSELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKMKERATE
         +L++ALWAYRT Y TP+GMSPYRLV+GKA HLP ELEH  FWA+KKLNFDL +   +R  QLNELEE R  SYENAK+ +  T+
Subjt:  FRLDEALWAYRTTYNTPLGMSPYRLVYGKASHLPSELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKMKERATE

A0A6A2WLX1 Reverse transcriptase2.5e-4458.9Show/hide
Query:  GGQYNHGTVDYVSKWVEAIACHQNDAKTV----------SWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWSFRLDEALWAYRTTYNTPLGMSPY
        G  Y    VDYVSKWVEAIA  +ND+KTV            I  +Y PQ NGQAE+SNREIK ILEKVV+P RKDWS +LDEALWAYRT++ TPLGMSP+
Subjt:  GGQYNHGTVDYVSKWVEAIACHQNDAKTV----------SWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWSFRLDEALWAYRTTYNTPLGMSPY

Query:  RLVYGKASHLPSELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKMKERATEE
        +LVYGKA HLP ELEHK +WA+K+LNFD       R+L+LNE++EFR  +YE A++ +  T++
Subjt:  RLVYGKASHLPSELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKMKERATEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACGAATGCCCTATGCAATACGGATTGTCAGATACACTGACACAGATTTTAAGACTGATAAGGATTTGAGGAAATCTACATCAGTATCTGTGGTCACTCTTTACGA
TGGAGCTATAGTATGCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTTCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGGCAACACAAGAAGGA
ATTCACTCGTTCCCGCTTCTAGGTTGTTCATTAGAGGAGCGCTGGCCAGTGGAGTCACTCCTCGTGTGTCTCCTCGTCAGCACCACCGGGCTCATAATATCCGCCAACAC
CTGCATCATCTAAAATGTTGGGGGGAAGAAAGGGGAGGGGGTCAGTACAACCATGGTACTGTTGATTACGTGTCCAAGTGGGTCGAAGCCATTGCATGCCATCAGAATGA
TGCTAAGACGGTATCATGGATAACTGCCTCTTATCTACCGCAAGCAAACGGTCAAGCTGAAGTTAGTAATAGGGAAATTAAATCTATTTTGGAGAAAGTAGTCCATCCAT
CTAGGAAAGATTGGTCTTTTCGGTTAGATGAGGCTCTTTGGGCTTATAGGACAACCTATAATACTCCTCTAGGTATGTCTCCCTATAGGTTAGTATATGGAAAAGCTAGC
CATTTACCGTCAGAGCTTGAGCATAAAACGTTTTGGGCTTTAAAGAAATTGAATTTTGATCTGAGTCGTACAGATGCAATAAGAATGCTGCAACTTAATGAATTAGAAGA
GTTTCGCCAGTTTTCTTATGAAAATGCGAAAATGAAAGAGAGAGCTACTGAGGAAGAGGAAGTTCCCATTACGCCTGAGGCACCAAAAACAAAAGCAAAGAAAAGGAAGA
CGCTGGAAGAAAGAGAGGCTAAGAGACGAAGAAGACAACATAGAGCTGAGGTTACGGAAGTAGTGAGAAAGGTGATTGAGGACATTGCTGATGAAGCGGTTGAAGAAGAA
CAACCAAAGCAACCTGAGGAAAAGAAAGATGCTGAACAGAGTGAATCGACAGTTGAAAATCTGCAAGAAGTGCAAGAGAAGCAAGCGGAAGAAGTGCTAGAGCACGGAAA
CGGTCAGGGAACCCAAAAGCAGCAGATTCATACTGAAGAAATTGTGCTGGAGATTCCACGTCGTTGCCGCCGAAAGGAGAAGGCAGGACGAATCAAGGTGATTAGGACAG
ACACTCCATCGCCGTTGAAAACAGAATCTGAAAAAGAAAATGCTGAGAAAGAAGAGCAAGGGAAAAAGAAGAAACATAAAAGAAAGCAGAAGAGGAAGCTTTGGCGAAGC
ATCAAGAAGACAGGGGCAAGGGAGTTGCCGAAGCAACGGATGAAGCAGAAGAAGAATCAGGAATGTCGTTTATTCGCTTCGTCTATGAACTTGCCAAAGCAAAATACAGA
GAGATGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGACGAATGCCCTATGCAATACGGATTGTCAGATACACTGACACAGATTTTAAGACTGATAAGGATTTGAGGAAATCTACATCAGTATCTGTGGTCACTCTTTACGA
TGGAGCTATAGTATGCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTTCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGGCAACACAAGAAGGA
ATTCACTCGTTCCCGCTTCTAGGTTGTTCATTAGAGGAGCGCTGGCCAGTGGAGTCACTCCTCGTGTGTCTCCTCGTCAGCACCACCGGGCTCATAATATCCGCCAACAC
CTGCATCATCTAAAATGTTGGGGGGAAGAAAGGGGAGGGGGTCAGTACAACCATGGTACTGTTGATTACGTGTCCAAGTGGGTCGAAGCCATTGCATGCCATCAGAATGA
TGCTAAGACGGTATCATGGATAACTGCCTCTTATCTACCGCAAGCAAACGGTCAAGCTGAAGTTAGTAATAGGGAAATTAAATCTATTTTGGAGAAAGTAGTCCATCCAT
CTAGGAAAGATTGGTCTTTTCGGTTAGATGAGGCTCTTTGGGCTTATAGGACAACCTATAATACTCCTCTAGGTATGTCTCCCTATAGGTTAGTATATGGAAAAGCTAGC
CATTTACCGTCAGAGCTTGAGCATAAAACGTTTTGGGCTTTAAAGAAATTGAATTTTGATCTGAGTCGTACAGATGCAATAAGAATGCTGCAACTTAATGAATTAGAAGA
GTTTCGCCAGTTTTCTTATGAAAATGCGAAAATGAAAGAGAGAGCTACTGAGGAAGAGGAAGTTCCCATTACGCCTGAGGCACCAAAAACAAAAGCAAAGAAAAGGAAGA
CGCTGGAAGAAAGAGAGGCTAAGAGACGAAGAAGACAACATAGAGCTGAGGTTACGGAAGTAGTGAGAAAGGTGATTGAGGACATTGCTGATGAAGCGGTTGAAGAAGAA
CAACCAAAGCAACCTGAGGAAAAGAAAGATGCTGAACAGAGTGAATCGACAGTTGAAAATCTGCAAGAAGTGCAAGAGAAGCAAGCGGAAGAAGTGCTAGAGCACGGAAA
CGGTCAGGGAACCCAAAAGCAGCAGATTCATACTGAAGAAATTGTGCTGGAGATTCCACGTCGTTGCCGCCGAAAGGAGAAGGCAGGACGAATCAAGGTGATTAGGACAG
ACACTCCATCGCCGTTGAAAACAGAATCTGAAAAAGAAAATGCTGAGAAAGAAGAGCAAGGGAAAAAGAAGAAACATAAAAGAAAGCAGAAGAGGAAGCTTTGGCGAAGC
ATCAAGAAGACAGGGGCAAGGGAGTTGCCGAAGCAACGGATGAAGCAGAAGAAGAATCAGGAATGTCGTTTATTCGCTTCGTCTATGAACTTGCCAAAGCAAAATACAGA
GAGATGTTGA
Protein sequenceShow/hide protein sequence
MRRMPYAIRIVRYTDTDFKTDKDLRKSTSVSVVTLYDGAIVCMGESGQYADSICLSFWGQDRVGGWGHGNTRRNSLVPASRLFIRGALASGVTPRVSPRQHHRAHNIRQH
LHHLKCWGEERGGGQYNHGTVDYVSKWVEAIACHQNDAKTVSWITASYLPQANGQAEVSNREIKSILEKVVHPSRKDWSFRLDEALWAYRTTYNTPLGMSPYRLVYGKAS
HLPSELEHKTFWALKKLNFDLSRTDAIRMLQLNELEEFRQFSYENAKMKERATEEEEVPITPEAPKTKAKKRKTLEEREAKRRRRQHRAEVTEVVRKVIEDIADEAVEEE
QPKQPEEKKDAEQSESTVENLQEVQEKQAEEVLEHGNGQGTQKQQIHTEEIVLEIPRRCRRKEKAGRIKVIRTDTPSPLKTESEKENAEKEEQGKKKKHKRKQKRKLWRS
IKKTGARELPKQRMKQKKNQECRLFASSMNLPKQNTERC