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Lag0000246 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000246
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr4:2160300..2163718
RNA-Seq ExpressionLag0000246
SyntenyLag0000246
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]1.3e-1174.47Show/hide
Query:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR
        MRDCPLICTGESGQ  DSI L F GQDR+GSWE + TRWN LLP  R
Subjt:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR

KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]2.6e-0971.11Show/hide
Query:  DCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR
        DCPLI T ESGQ ADS+ L FWGQDR+ SWE + TRWNSLLP  R
Subjt:  DCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR

KAA0054514.1 hypothetical protein E6C27_scaffold24G002950 [Cucumis melo var. makuwa]2.9e-0877.27Show/hide
Query:  KVATYSASMVESAMHPCLMLCHTLALPFRVNTELDVDFLESLSV
        +  TYSAS+VESAMHPCL+L HT A PFRVNT+ DVDFLESLSV
Subjt:  KVATYSASMVESAMHPCLMLCHTLALPFRVNTELDVDFLESLSV

TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-1170.21Show/hide
Query:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR
        +RDCPL CTGESGQ  DSI L FWGQDR+GSWE + TRWNS +P  R
Subjt:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR

TYK28175.1 hypothetical protein E5676_scaffold289G00930 [Cucumis melo var. makuwa]3.8e-0877.27Show/hide
Query:  KVATYSASMVESAMHPCLMLCHTLALPFRVNTELDVDFLESLSV
        + ATYS  +VESAMHPCLML HT A PFRVN +LDVDFLESLSV
Subjt:  KVATYSASMVESAMHPCLMLCHTLALPFRVNTELDVDFLESLSV

TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein6.1e-1274.47Show/hide
Query:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR
        MRDCPLICTGESGQ  DSI L F GQDR+GSWE + TRWN LLP  R
Subjt:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR

A0A5A7U2P4 Integrase catalytic domain-containing protein1.3e-0971.11Show/hide
Query:  DCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR
        DCPLI T ESGQ ADS+ L FWGQDR+ SWE + TRWNSLLP  R
Subjt:  DCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR

A0A5D3BHZ1 Uncharacterized protein1.4e-0877.27Show/hide
Query:  KVATYSASMVESAMHPCLMLCHTLALPFRVNTELDVDFLESLSV
        +  TYSAS+VESAMHPCL+L HT A PFRVNT+ DVDFLESLSV
Subjt:  KVATYSASMVESAMHPCLMLCHTLALPFRVNTELDVDFLESLSV

A0A5D3C3J6 Gag/pol protein7.9e-1270.21Show/hide
Query:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR
        +RDCPL CTGESGQ  DSI L FWGQDR+GSWE + TRWNS +P  R
Subjt:  MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMR

A0A5D3DXW8 Uncharacterized protein1.8e-0877.27Show/hide
Query:  KVATYSASMVESAMHPCLMLCHTLALPFRVNTELDVDFLESLSV
        + ATYS  +VESAMHPCLML HT A PFRVN +LDVDFLESLSV
Subjt:  KVATYSASMVESAMHPCLMLCHTLALPFRVNTELDVDFLESLSV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACGTAGTCTTAC
AAGATGGAATTCACTCCTTCCTGATATGAGGGTAAGTAGAGGTCCATTAGGTCCCACCAGTAGCTCATTTAGGGCGTTGAGCAAGACCAAAGTTGATTTGCTGCTGTATT
TTTGGGAGAAATTCAGAGAATTTGGCGTAACAATCAAGGTAGCTACATATTCGGCCTCCATGGTCGAGTCTGCTATGCATCCTTGTTTGATGTTATGCCACACTTTAGCT
CTTCCATTTAGAGTGAATACTGAACTTGATGTGGATTTCCTTGAATCCTTATCGGTATCGATCCCACAGGGGCTAAATTGGAAACACAGATTTGAAAAAGAAACTGCTCA
AAGATTGCTTTTGAAAGGTACCTTGGGTCAATTATGGAGTTTTGGAGCCATCTTGGCGTTCTTGGACGGCGAGGAGGTGAAAAGACCCAAGTGTATCGAAGCAGGTCTGA
AGAACGACACCAAGAATCGAAGGTTGAAGCCTCATCCGAGAATTAACGAGACAAAACCAAGAAAAAGACAGCAAGGTTCAGATTGGGGATGGCGTCTCGACGCCACGACG
TTTTCTATAAATATAGGGCTTCAGTGTAGTCCGTCGTTAGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACGTAGTCTTAC
AAGATGGAATTCACTCCTTCCTGATATGAGGGTAAGTAGAGGTCCATTAGGTCCCACCAGTAGCTCATTTAGGGCGTTGAGCAAGACCAAAGTTGATTTGCTGCTGTATT
TTTGGGAGAAATTCAGAGAATTTGGCGTAACAATCAAGGTAGCTACATATTCGGCCTCCATGGTCGAGTCTGCTATGCATCCTTGTTTGATGTTATGCCACACTTTAGCT
CTTCCATTTAGAGTGAATACTGAACTTGATGTGGATTTCCTTGAATCCTTATCGGTATCGATCCCACAGGGGCTAAATTGGAAACACAGATTTGAAAAAGAAACTGCTCA
AAGATTGCTTTTGAAAGGTACCTTGGGTCAATTATGGAGTTTTGGAGCCATCTTGGCGTTCTTGGACGGCGAGGAGGTGAAAAGACCCAAGTGTATCGAAGCAGGTCTGA
AGAACGACACCAAGAATCGAAGGTTGAAGCCTCATCCGAGAATTAACGAGACAAAACCAAGAAAAAGACAGCAAGGTTCAGATTGGGGATGGCGTCTCGACGCCACGACG
TTTTCTATAAATATAGGGCTTCAGTGTAGTCCGTCGTTAGGTTAG
Protein sequenceShow/hide protein sequence
MRDCPLICTGESGQFADSISLPFWGQDRMGSWERSLTRWNSLLPDMRVSRGPLGPTSSSFRALSKTKVDLLLYFWEKFREFGVTIKVATYSASMVESAMHPCLMLCHTLA
LPFRVNTELDVDFLESLSVSIPQGLNWKHRFEKETAQRLLLKGTLGQLWSFGAILAFLDGEEVKRPKCIEAGLKNDTKNRRLKPHPRINETKPRKRQQGSDWGWRLDATT
FSINIGLQCSPSLG