; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000257 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000257
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr4:2463052..2463566
RNA-Seq ExpressionLag0000257
SyntenyLag0000257
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR027806 - Harbinger transposase-derived nuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054346.1 retrotransposon protein [Cucumis melo var. makuwa]6.6e-3577.08Show/hide
Query:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY
        +NCLGALD  YIKV V VSDR RYRTRKGE+ATNVLGV   K + I+V+ GWEGS ADSRILRDA+SR NGL VPKGYYYL DVG PNAEGFLAPY
Subjt:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY

KAA0063060.1 retrotransposon protein [Cucumis melo var. makuwa]6.6e-3575Show/hide
Query:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY
        +NCLGALD  YIKV V   DRP +RTRKGEIATNVLGV   K + ++V+ GWEGS ADSRILRDAISR NGL VPKGYYYLCD G PNAEGFLAPY
Subjt:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY

KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-3576.04Show/hide
Query:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY
        Q CLGALD  +IKV VS+SDRPRYR+RKG+I TNVLGV     E IFVMPGWEGS +DSR+LRDA+SRL GL VPKGYYYLCD G PNAEGFLAPY
Subjt:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY

KAA0068154.1 retrotransposon protein [Cucumis melo var. makuwa]5.0e-3575Show/hide
Query:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY
        +NCLGALD  YIKV V V DRP +RTRKGEIATN+LGV   K + ++V+ GWEGS ADSRILRDAISR NGL VPKGYYYLCD G PNAEGFLAPY
Subjt:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY

XP_008455792.1 PREDICTED: putative nuclease HARBI1 [Cucumis melo]5.9e-3677.08Show/hide
Query:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY
        +NCLGALD  YIKV VS +DRPRYRTRKGE+ATNVLG    K + +FV+ GWEGS ADSRILRDAISR NGL VPKGYYYLCD G PNAEGFLAPY
Subjt:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY

TrEMBL top hitse value%identityAlignment
A0A1S3C1U8 putative nuclease HARBI12.9e-3677.08Show/hide
Query:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY
        +NCLGALD  YIKV VS +DRPRYRTRKGE+ATNVLG    K + +FV+ GWEGS ADSRILRDAISR NGL VPKGYYYLCD G PNAEGFLAPY
Subjt:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY

A0A5A7V738 Retrotransposon protein3.2e-3575Show/hide
Query:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY
        +NCLGALD  YIKV V   DRP +RTRKGEIATNVLGV   K + ++V+ GWEGS ADSRILRDAISR NGL VPKGYYYLCD G PNAEGFLAPY
Subjt:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY

A0A5A7VG45 Retrotransposon protein6.4e-3676.04Show/hide
Query:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY
        Q CLGALD  +IKV VS+SDRPRYR+RKG+I TNVLGV     E IFVMPGWEGS +DSR+LRDA+SRL GL VPKGYYYLCD G PNAEGFLAPY
Subjt:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY

A0A5A7VL61 Retrotransposon protein2.4e-3575Show/hide
Query:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY
        +NCLGALD  YIKV V V DRP +RTRKGEIATN+LGV   K + ++V+ GWEGS ADSRILRDAISR NGL VPKGYYYLCD G PNAEGFLAPY
Subjt:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY

A0A5D3CKE3 Retrotransposon protein3.2e-3577.08Show/hide
Query:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY
        +NCLGALD  YIKV V VSDR RYRTRKGE+ATNVLGV   K + I+V+ GWEGS ADSRILRDA+SR NGL VPKGYYYL DVG PNAEGFLAPY
Subjt:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein1.6e-0730.85Show/hide
Query:  LGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKG-YYYLCDVGDPNAEGFLAPY
        +GA+D  ++ VKV    +  Y  R    + N++ +   K    ++  G  GS  D+ +L+ A    +   +P    YYL D G PN +G LAPY
Subjt:  LGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTVPKG-YYYLCDVGDPNAEGFLAPY

AT5G28730.1 unknown protein3.8e-0437.68Show/hide
Query:  GEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTV-PKGYYYLCDVGDPNAEGFLAPY
        G  + NVL +        +   G  GS  D+R+L  AIS      V P   YYL D G  N  G+LAPY
Subjt:  GEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISRLNGLTV-PKGYYYLCDVGDPNAEGFLAPY

AT5G28950.1 unknown protein3.4e-1342.86Show/hide
Query:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISR-LNGLTVPK
        ++C+GA+DD +I   VS    P +R RKG+I+ N+L   +   E ++V+ GWEGS  DS++L DA++R  N L VP+
Subjt:  QNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRILRDAISR-LNGLTVPK

AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)3.4e-0543.14Show/hide
Query:  IFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY
        I+V+ GWEGS  DSR+L DA+ +          +YL D G  N   FLAP+
Subjt:  IFVMPGWEGSVADSRILRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTTTTTCTTAAGAAACCAGAACCAATCACGAGTTCTTGCCAAGATGGGAGATGGAAATGGTTCGAGGTATGGATATTGTATGTTAGTAGAATGCGTGAAGATCTT
ACAATGTCTTCCTCACACTGGTTATGTGATCTTGAAACAAAATTGTTTGGGAGCATTGGACGATATGTACATAAAAGTCAAGGTGAGTGTTTCTGATCGACCAAGATATA
GGACGCGAAAGGGTGAGATTGCAACAAATGTGTTGGGCGTTGTGTCCCCAAAACGTGAAATCATTTTCGTCATGCCAGGATGGGAAGGGTCAGTTGCTGATTCTCGTATA
CTTAGAGATGCAATATCACGCCTCAATGGCCTAACTGTTCCGAAGGGGTATTACTATTTATGTGATGTCGGGGACCCAAATGCAGAGGGATTCTTGGCACCGTACATGTA
A
mRNA sequenceShow/hide mRNA sequence
ATGACGTTTTTCTTAAGAAACCAGAACCAATCACGAGTTCTTGCCAAGATGGGAGATGGAAATGGTTCGAGGTATGGATATTGTATGTTAGTAGAATGCGTGAAGATCTT
ACAATGTCTTCCTCACACTGGTTATGTGATCTTGAAACAAAATTGTTTGGGAGCATTGGACGATATGTACATAAAAGTCAAGGTGAGTGTTTCTGATCGACCAAGATATA
GGACGCGAAAGGGTGAGATTGCAACAAATGTGTTGGGCGTTGTGTCCCCAAAACGTGAAATCATTTTCGTCATGCCAGGATGGGAAGGGTCAGTTGCTGATTCTCGTATA
CTTAGAGATGCAATATCACGCCTCAATGGCCTAACTGTTCCGAAGGGGTATTACTATTTATGTGATGTCGGGGACCCAAATGCAGAGGGATTCTTGGCACCGTACATGTA
A
Protein sequenceShow/hide protein sequence
MTFFLRNQNQSRVLAKMGDGNGSRYGYCMLVECVKILQCLPHTGYVILKQNCLGALDDMYIKVKVSVSDRPRYRTRKGEIATNVLGVVSPKREIIFVMPGWEGSVADSRI
LRDAISRLNGLTVPKGYYYLCDVGDPNAEGFLAPYM