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Lag0000261 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000261
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRT_RNaseH_2 domain-containing protein
Genome locationchr4:2473714..2474359
RNA-Seq ExpressionLag0000261
SyntenyLag0000261
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8695166.1 hypothetical protein F3Y22_tig00110733pilonHSYRG00282 [Hibiscus syriacus]5.9e-0833Show/hide
Query:  FVNNSARAKYVELLKRDFLFERGF------SGDLLHFLRTGITDHGWELFCAKPESINAQVVCEFYANINKEDGFQVIVRGVKVDWSPSAINALYNLQIS
        FV+ +A+  Y  +  R   FE GF      + +L   +   +T H W+ F   P  +NA +V EFY+NI + +   V+VRG+ + ++P+AIN  + LQ++
Subjt:  FVNNSARAKYVELLKRDFLFERGF------SGDLLHFLRTGITDHGWELFCAKPESINAQVVCEFYANINKEDGFQVIVRGVKVDWSPSAINALYNLQIS

KZM94204.1 hypothetical protein DCAR_017447 [Daucus carota subsp. sativus]4.5e-0834.26Show/hide
Query:  ASEKPDEVDEPQLPYDRFVNNSARAKYVELLKRDFLFERGF-----SGDLLHFLRTGITDHGWELFCAKPESINAQVVCEFYANINK-EDGFQVIVRGVK
        +++ P   D   +    F ++ AR ++  L+ +  + ERGF      G+LL+     I + GWE FC  PE++   ++ EFYAN  +  DGF  +VRG++
Subjt:  ASEKPDEVDEPQLPYDRFVNNSARAKYVELLKRDFLFERGF-----SGDLLHFLRTGITDHGWELFCAKPESINAQVVCEFYANINK-EDGFQVIVRGVK

Query:  VDWSPSAI
        VD+S  AI
Subjt:  VDWSPSAI

PKC51568.1 hypothetical protein RhiirA1_483454, partial [Rhizophagus irregularis]2.7e-0835.19Show/hide
Query:  ASEKPDEVDEPQLPYDRFVNNSARAKYVELLKRDFLFERGF-----SGDLLHFLRTGITDHGWELFCAKPESINAQVVCEFYANINK-EDGFQVIVRGVK
        +++ P   D   +    F ++ AR ++  L+ +  + ERGF      GDLL      I + GWE FC  PE++   ++ EFYAN  +  DGF  +VRG++
Subjt:  ASEKPDEVDEPQLPYDRFVNNSARAKYVELLKRDFLFERGF-----SGDLLHFLRTGITDHGWELFCAKPESINAQVVCEFYANINK-EDGFQVIVRGVK

Query:  VDWSPSAI
        VD+S  AI
Subjt:  VDWSPSAI

PON42276.1 hypothetical protein PanWU01x14_283280 [Parasponia andersonii]3.1e-0941.67Show/hide
Query:  NNSARAKYVE-LLKRDFLFERGFSGDLLH------FLRTGITDHGWELFCAKPESINAQVVCEFYANINKEDGFQVIVRGVKVDWSPSAINALYNL
        + +A  +Y E +  R    E+GF GD         F+   IT H W+LFCA PE + A +V EFYAN+   D   V VRGV+V  S  AIN +Y L
Subjt:  NNSARAKYVE-LLKRDFLFERGFSGDLLH------FLRTGITDHGWELFCAKPESINAQVVCEFYANINKEDGFQVIVRGVKVDWSPSAINALYNL

PON65868.1 hypothetical protein PanWU01x14_113570 [Parasponia andersonii]1.6e-0840.4Show/hide
Query:  RFVNNSARAKYVE-LLKRDFLFERGFSGDLLH------FLRTGITDHGWELFCAKPESINAQVVCEFYANINKEDGFQVIVRGVKVDWSPSAINALYNL
        +F + +A  +Y E +  R    E+GF GD         F+   IT H W+LFCA PE     +V EFYAN+   D   V VRGV+V  S  AIN +Y L
Subjt:  RFVNNSARAKYVE-LLKRDFLFERGFSGDLLH------FLRTGITDHGWELFCAKPESINAQVVCEFYANINKEDGFQVIVRGVKVDWSPSAINALYNL

TrEMBL top hitse value%identityAlignment
A0A164YA28 Uncharacterized protein2.2e-0834.26Show/hide
Query:  ASEKPDEVDEPQLPYDRFVNNSARAKYVELLKRDFLFERGF-----SGDLLHFLRTGITDHGWELFCAKPESINAQVVCEFYANINK-EDGFQVIVRGVK
        +++ P   D   +    F ++ AR ++  L+ +  + ERGF      G+LL+     I + GWE FC  PE++   ++ EFYAN  +  DGF  +VRG++
Subjt:  ASEKPDEVDEPQLPYDRFVNNSARAKYVELLKRDFLFERGF-----SGDLLHFLRTGITDHGWELFCAKPESINAQVVCEFYANINK-EDGFQVIVRGVK

Query:  VDWSPSAI
        VD+S  AI
Subjt:  VDWSPSAI

A0A2N0QKH9 Uncharacterized protein (Fragment)1.3e-0835.19Show/hide
Query:  ASEKPDEVDEPQLPYDRFVNNSARAKYVELLKRDFLFERGF-----SGDLLHFLRTGITDHGWELFCAKPESINAQVVCEFYANINK-EDGFQVIVRGVK
        +++ P   D   +    F ++ AR ++  L+ +  + ERGF      GDLL      I + GWE FC  PE++   ++ EFYAN  +  DGF  +VRG++
Subjt:  ASEKPDEVDEPQLPYDRFVNNSARAKYVELLKRDFLFERGF-----SGDLLHFLRTGITDHGWELFCAKPESINAQVVCEFYANINK-EDGFQVIVRGVK

Query:  VDWSPSAI
        VD+S  AI
Subjt:  VDWSPSAI

A0A2P5B0K0 Uncharacterized protein1.5e-0941.67Show/hide
Query:  NNSARAKYVE-LLKRDFLFERGFSGDLLH------FLRTGITDHGWELFCAKPESINAQVVCEFYANINKEDGFQVIVRGVKVDWSPSAINALYNL
        + +A  +Y E +  R    E+GF GD         F+   IT H W+LFCA PE + A +V EFYAN+   D   V VRGV+V  S  AIN +Y L
Subjt:  NNSARAKYVE-LLKRDFLFERGFSGDLLH------FLRTGITDHGWELFCAKPESINAQVVCEFYANINKEDGFQVIVRGVKVDWSPSAINALYNL

A0A2P5CXV1 Uncharacterized protein7.6e-0940.4Show/hide
Query:  RFVNNSARAKYVE-LLKRDFLFERGFSGDLLH------FLRTGITDHGWELFCAKPESINAQVVCEFYANINKEDGFQVIVRGVKVDWSPSAINALYNL
        +F + +A  +Y E +  R    E+GF GD         F+   IT H W+LFCA PE     +V EFYAN+   D   V VRGV+V  S  AIN +Y L
Subjt:  RFVNNSARAKYVE-LLKRDFLFERGFSGDLLH------FLRTGITDHGWELFCAKPESINAQVVCEFYANINKEDGFQVIVRGVKVDWSPSAINALYNL

A0A6A2ZUE4 Uncharacterized protein2.9e-0833Show/hide
Query:  FVNNSARAKYVELLKRDFLFERGF------SGDLLHFLRTGITDHGWELFCAKPESINAQVVCEFYANINKEDGFQVIVRGVKVDWSPSAINALYNLQIS
        FV+ +A+  Y  +  R   FE GF      + +L   +   +T H W+ F   P  +NA +V EFY+NI + +   V+VRG+ + ++P+AIN  + LQ++
Subjt:  FVNNSARAKYVELLKRDFLFERGF------SGDLLHFLRTGITDHGWELFCAKPESINAQVVCEFYANINKEDGFQVIVRGVKVDWSPSAINALYNLQIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCGTGCAGGAGGCGCGGTGGAGGTGATCATGTCGGAGGTGCCTAAACGTCGCCGCATTAAACGAAAAGTCGGCCGTGTTCAGGGCGGAAAAGGCAAAAGTGTTGT
TGAAGCATCGGAAAAACCTGATGAGGTAGATGAGCCACAGTTGCCATATGATCGCTTCGTCAACAATTCTGCCAGAGCAAAATATGTTGAGCTGCTGAAAAGAGATTTCC
TGTTTGAGAGAGGATTTAGCGGTGATCTTCTGCATTTTCTGAGGACCGGCATTACAGACCACGGCTGGGAATTGTTTTGTGCAAAGCCTGAGTCTATAAACGCGCAGGTG
GTGTGCGAATTTTATGCTAATATTAACAAAGAAGATGGTTTCCAAGTGATTGTTCGAGGAGTCAAAGTCGACTGGAGTCCTAGTGCTATTAACGCACTGTATAACCTTCA
AATTTCCCCCACGCAGCGTATAATGAGATGGCTGTGGCGTCATCCAATGAGCAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCCGTGCAGGAGGCGCGGTGGAGGTGATCATGTCGGAGGTGCCTAAACGTCGCCGCATTAAACGAAAAGTCGGCCGTGTTCAGGGCGGAAAAGGCAAAAGTGTTGT
TGAAGCATCGGAAAAACCTGATGAGGTAGATGAGCCACAGTTGCCATATGATCGCTTCGTCAACAATTCTGCCAGAGCAAAATATGTTGAGCTGCTGAAAAGAGATTTCC
TGTTTGAGAGAGGATTTAGCGGTGATCTTCTGCATTTTCTGAGGACCGGCATTACAGACCACGGCTGGGAATTGTTTTGTGCAAAGCCTGAGTCTATAAACGCGCAGGTG
GTGTGCGAATTTTATGCTAATATTAACAAAGAAGATGGTTTCCAAGTGATTGTTCGAGGAGTCAAAGTCGACTGGAGTCCTAGTGCTATTAACGCACTGTATAACCTTCA
AATTTCCCCCACGCAGCGTATAATGAGATGGCTGTGGCGTCATCCAATGAGCAACTGA
Protein sequenceShow/hide protein sequence
MSRAGGAVEVIMSEVPKRRRIKRKVGRVQGGKGKSVVEASEKPDEVDEPQLPYDRFVNNSARAKYVELLKRDFLFERGFSGDLLHFLRTGITDHGWELFCAKPESINAQV
VCEFYANINKEDGFQVIVRGVKVDWSPSAINALYNLQISPTQRIMRWLWRHPMSN