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Lag0000269 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000269
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr4:2658071..2659340
RNA-Seq ExpressionLag0000269
SyntenyLag0000269
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8817564.1 hypothetical protein D1007_04663 [Hordeum vulgare]2.2e-1633.01Show/hide
Query:  SLGTGPWFYDKALLLFEEPK-----GDICSDDMD-----FRASAESIGGLIGKVEKGDIKDDFDPSWGRLLRIKIRIDVRKALKRGIFMKAGSKGIDKWI
        +L  GPW  +  L++ EE       G+   D +      FR    S+   +G+V + ++ DD D + G  LR+K+RID+ K L RG+ M+ G KG ++W 
Subjt:  SLGTGPWFYDKALLLFEEPK-----GDICSDDMD-----FRASAESIGGLIGKVEKGDIKDDFDPSWGRLLRIKIRIDVRKALKRGIFMKAGSKGIDKWI

Query:  PVTYEKLPDFCYGCGCLGHIIKECEDPNGNCEEEILYRPWLREPARLKIEEDSFTGGGNWSRRRGRGWNSGR--VQWRKE---VSEGEEDDDSE-WQQDE
        P  YE LP FCY CG +GH  KEC   +   E++  Y PWL    R  I + S +          R WN GR    +R     + +G    +S+ W++D 
Subjt:  PVTYEKLPDFCYGCGCLGHIIKECEDPNGNCEEEILYRPWLREPARLKIEEDSFTGGGNWSRRRGRGWNSGR--VQWRKE---VSEGEEDDDSE-WQQDE

Query:  VEEKQG
        V    G
Subjt:  VEEKQG

TXG53049.1 hypothetical protein EZV62_022218 [Acer yangbiense]2.0e-1734.9Show/hide
Query:  GPWFYDKALLLFEEPKGDICSDDMDFRASAESIGGLIGKVEKGDIKDDFDPSWGRLLRIKIRIDVRKALKRGIFMKAGSKGIDKWIPVTYEKLPDFCYGC
        GPW++DK+L++ E+P+G      M+ R SA+ I   IGKV   +I  +    WG+ +++K++I++ K LKR + +K     +   + + YE+LP+FCY C
Subjt:  GPWFYDKALLLFEEPKGDICSDDMDFRASAESIGGLIGKVEKGDIKDDFDPSWGRLLRIKIRIDVRKALKRGIFMKAGSKGIDKWIPVTYEKLPDFCYGC

Query:  GCLGHIIKECEDPNGNCEEE----ILYRPWLRE--PARLKIEEDSFTGG
        G +GH  KEC D     E       +Y  W+R   P R K+  D    G
Subjt:  GCLGHIIKECEDPNGNCEEE----ILYRPWLRE--PARLKIEEDSFTGG

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]8.9e-1834.06Show/hide
Query:  FMSVGRSNYVCCLFCSSAIVCTSLGTGPWFYDKALLLFEEPKGDICSDDMDFR------------------ASAESIGGLIGKVEKGDIKDDFDPSW-GR
        F  +G + YV  LF S +     L +GPW ++K+LL+   P       DM+F                     A  +G  +G VE  +I+ D    W G 
Subjt:  FMSVGRSNYVCCLFCSSAIVCTSLGTGPWFYDKALLLFEEPKGDICSDDMDFR------------------ASAESIGGLIGKVEKGDIKDDFDPSW-GR

Query:  LLRIKIRIDVRKALKRGIFMKAGSKGIDKWIPVTYEKLPDFCYGCGCLGHIIKECEDPN----GNCEEEILYRPWLREPARLKI----EEDSFTGGGNWS
         +R++++IDV K L+RGI +K  S G D W P+ YEKLPDFCY CG +GH  +ECE  +     N  E+  Y  WLR     K     EE+ F  GG + 
Subjt:  LLRIKIRIDVRKALKRGIFMKAGSKGIDKWIPVTYEKLPDFCYGCGCLGHIIKECEDPN----GNCEEEILYRPWLREPARLKI----EEDSFTGGGNWS

Query:  R-RRGRGWNSGRVQWRKEVSEGEEDDDSE
        R  +  G   GR  WR+      + D  E
Subjt:  R-RRGRGWNSGRVQWRKEVSEGEEDDDSE

XP_030936068.1 uncharacterized protein LOC115961187 [Quercus lobata]1.5e-1732.84Show/hide
Query:  LGTGPWFYDKALLLFEEPKGDICSDDMDF------------------RASAESIGGLIGKVEKGDIKDDFDPSWGRLLRIKIRIDVRKALKRGIFMKAGS
        L   PW Y K L+L ++ +GD    D+ F                  R +  +IG  +G+V + D+ D     WG+ L ++++IDV K L RG   K   
Subjt:  LGTGPWFYDKALLLFEEPKGDICSDDMDF------------------RASAESIGGLIGKVEKGDIKDDFDPSWGRLLRIKIRIDVRKALKRGIFMKAGS

Query:  KGIDKWIPVTYEKLPDFCYGCGCLGHIIKECEDPNG----NCEEEILYRPWLR-EPARLKIEEDSF----TGGGNWSRRRGRGWNSGRVQWRKEVSEGEE
        +G+D+W+   YE+LP+FCY CG L H +KEC    G       EE+ Y  W+R +P +    E  F     GG  W +R G G  S  VQ  +  + G E
Subjt:  KGIDKWIPVTYEKLPDFCYGCGCLGHIIKECEDPNG----NCEEEILYRPWLR-EPARLKIEEDSF----TGGGNWSRRRGRGWNSGRVQWRKEVSEGEE

Query:  DDDS
         + S
Subjt:  DDDS

XP_039815069.1 uncharacterized protein LOC120677956 [Panicum virgatum]7.5e-1733.33Show/hide
Query:  NYVCCLFCSSAIVCTSLGTGPWFYDKALLLFEEPKGDICSDDMDF------------------RASAESIGGLIGKVEKGDIKDDFDPSWGRLLRIKIRI
        N+    F  +A    +L  GPW + K L++  +       ++MDF                  +A+ E+IG  IG     D+ +D D + GR LRIK+R+
Subjt:  NYVCCLFCSSAIVCTSLGTGPWFYDKALLLFEEPKGDICSDDMDF------------------RASAESIGGLIGKVEKGDIKDDFDPSWGRLLRIKIRI

Query:  DVRKALKRGIFMKAGSKGIDKWIPVTYEKLPDFCYGCGCLGHIIKECEDPNGNCEEEILYRPWLREPARLKIEE
        D+RK L RG+ +  G +    W PV YE LPDFCY CG +GH  K CE      E +   +     P R ++EE
Subjt:  DVRKALKRGIFMKAGSKGIDKWIPVTYEKLPDFCYGCGCLGHIIKECEDPNGNCEEEILYRPWLREPARLKIEE

TrEMBL top hitse value%identityAlignment
A0A1R3JW24 Reverse transcriptase2.4e-1634.9Show/hide
Query:  FCSSAIVCTSLGTGPWFYDKALLLFEEPKGDICSDDMDFRAS------------------AESIGGLIGKVEKGDIKDDFDPSWGRLLRIKIRIDVRKAL
        F S A +   L   PW +DK LLLF    G++C +D +F  +                  AE +G  +GK+   D   D +  W R LR+++ IDV K L
Subjt:  FCSSAIVCTSLGTGPWFYDKALLLFEEPKGDICSDDMDFRAS------------------AESIGGLIGKVEKGDIKDDFDPSWGRLLRIKIRIDVRKAL

Query:  KRGIFMKAGSKGIDKWIPVTYEKLPDFCYGCGCLGHIIKECED-PNGNCEEEILYRPWLR-EPARLKIEEDSFTGGGNWSRRRGRGWNSGRV
        +R I +   S+G      + YE+LP FC  CG +GH   +CED   GN E  + Y  WLR  P + K+     TG G  SR   RG N+G +
Subjt:  KRGIFMKAGSKGIDKWIPVTYEKLPDFCYGCGCLGHIIKECED-PNGNCEEEILYRPWLR-EPARLKIEEDSFTGGGNWSRRRGRGWNSGRV

A0A5C7H8K2 CCHC-type domain-containing protein9.6e-1834.9Show/hide
Query:  GPWFYDKALLLFEEPKGDICSDDMDFRASAESIGGLIGKVEKGDIKDDFDPSWGRLLRIKIRIDVRKALKRGIFMKAGSKGIDKWIPVTYEKLPDFCYGC
        GPW++DK+L++ E+P+G      M+ R SA+ I   IGKV   +I  +    WG+ +++K++I++ K LKR + +K     +   + + YE+LP+FCY C
Subjt:  GPWFYDKALLLFEEPKGDICSDDMDFRASAESIGGLIGKVEKGDIKDDFDPSWGRLLRIKIRIDVRKALKRGIFMKAGSKGIDKWIPVTYEKLPDFCYGC

Query:  GCLGHIIKECEDPNGNCEEE----ILYRPWLRE--PARLKIEEDSFTGG
        G +GH  KEC D     E       +Y  W+R   P R K+  D    G
Subjt:  GCLGHIIKECEDPNGNCEEE----ILYRPWLRE--PARLKIEEDSFTGG

A0A6J1D765 uncharacterized protein LOC1110179024.3e-1834.06Show/hide
Query:  FMSVGRSNYVCCLFCSSAIVCTSLGTGPWFYDKALLLFEEPKGDICSDDMDFR------------------ASAESIGGLIGKVEKGDIKDDFDPSW-GR
        F  +G + YV  LF S +     L +GPW ++K+LL+   P       DM+F                     A  +G  +G VE  +I+ D    W G 
Subjt:  FMSVGRSNYVCCLFCSSAIVCTSLGTGPWFYDKALLLFEEPKGDICSDDMDFR------------------ASAESIGGLIGKVEKGDIKDDFDPSW-GR

Query:  LLRIKIRIDVRKALKRGIFMKAGSKGIDKWIPVTYEKLPDFCYGCGCLGHIIKECEDPN----GNCEEEILYRPWLREPARLKI----EEDSFTGGGNWS
         +R++++IDV K L+RGI +K  S G D W P+ YEKLPDFCY CG +GH  +ECE  +     N  E+  Y  WLR     K     EE+ F  GG + 
Subjt:  LLRIKIRIDVRKALKRGIFMKAGSKGIDKWIPVTYEKLPDFCYGCGCLGHIIKECEDPN----GNCEEEILYRPWLREPARLKI----EEDSFTGGGNWS

Query:  R-RRGRGWNSGRVQWRKEVSEGEEDDDSE
        R  +  G   GR  WR+      + D  E
Subjt:  R-RRGRGWNSGRVQWRKEVSEGEEDDDSE

A0A6P9EGW2 uncharacterized protein LOC1183486451.8e-1632.58Show/hide
Query:  SFMSVGRSNYVCCLFCSSAIVCTSLGTG-PWFYDKALLLFEEPKGDICSDDMDF------------------RASAESIGGLIGKVEKGDIKDDFDPSWG
        +F  +GR+ ++  L   ++ V T + TG PW +D+ L+  +E KG +   D+DF                  + ++E +G   GKV   D+ D+   +WG
Subjt:  SFMSVGRSNYVCCLFCSSAIVCTSLGTG-PWFYDKALLLFEEPKGDICSDDMDF------------------RASAESIGGLIGKVEKGDIKDDFDPSWG

Query:  RLLRIKIRIDVRKALKRGIFMKAGSKGIDKWIPVTYEKLPDFCYGCGCLGHIIKEC----EDPNGNCEEEILYRPWLR
         +LR+K+ ID+ K L RG  +  G      WIP  YEKLP FCY CG + H    C     D + + +  + Y PWLR
Subjt:  RLLRIKIRIDVRKALKRGIFMKAGSKGIDKWIPVTYEKLPDFCYGCGCLGHIIKEC----EDPNGNCEEEILYRPWLR

A0A803N409 Uncharacterized protein1.3e-1738.1Show/hide
Query:  PWFYDKALLLFEEPKGDICSDDMD--------------FRASAESIGGLIGKVEKGDIK-DDFDP-SWGRLLRIKIRIDVRKALKRGIFMKAGSKGIDKW
        PWF+D  L+L  E  GD    D+D              F      +   +G V  G I  D++DP  WG  +RIK+ +D++K L RG+FM  G     KW
Subjt:  PWFYDKALLLFEEPKGDICSDDMD--------------FRASAESIGGLIGKVEKGDIK-DDFDP-SWGRLLRIKIRIDVRKALKRGIFMKAGSKGIDKW

Query:  IPVTYEKLPDFCYGCGCLGHIIKEC---EDPNGNCEEEIL-YRPWLR
        I + YE+L DFC+ CGCL H  K C   E+ +  C E +  Y PWLR
Subjt:  IPVTYEKLPDFCYGCGCLGHIIKEC---EDPNGNCEEEIL-YRPWLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTCCAATCCTTCATGAGTGTCGGTAGGAGCAACTATGTTTGTTGTTTGTTTTGTTCTTCTGCTATTGTTTGCACGTCACTGGGGACGGGGCCTTGGTTTTATGA
CAAAGCATTGTTGTTGTTCGAGGAACCTAAGGGAGACATATGCAGTGATGATATGGACTTCAGGGCATCTGCAGAATCAATAGGCGGCCTAATTGGAAAGGTAGAGAAAG
GAGATATCAAGGATGACTTTGATCCGTCATGGGGGAGATTATTGAGAATTAAAATTCGAATTGATGTTCGGAAGGCATTGAAAAGAGGAATTTTTATGAAAGCAGGGAGC
AAGGGAATCGATAAGTGGATCCCGGTAACATACGAGAAGCTACCAGATTTTTGTTATGGTTGTGGATGTTTGGGACACATTATTAAGGAATGTGAGGATCCAAATGGCAA
TTGTGAGGAAGAAATATTGTACAGACCGTGGCTGCGCGAACCTGCAAGACTTAAAATTGAGGAAGACAGCTTTACTGGGGGAGGCAATTGGAGTAGAAGAAGAGGGAGAG
GTTGGAACAGTGGTCGTGTGCAATGGAGAAAGGAAGTATCGGAGGGGGAAGAGGATGATGACTCTGAATGGCAGCAAGACGAAGTGGAGGAGAAGCAAGGTCCGACGGAC
GTAACACGACGGAATGCTCCGACGCCGACGAGGTGTGAGAAACCAGTAATGGCAACATTTTCAAAAAAGGAAGGAGAAGATGTTAAGGATAATAAGAGTTATGATAATTG
CGGAAATCAATGGGGACGTGAAGGAGACACGATTAAGGAAGGATCGGTTATGATTGGGGGTGATATTCAGAGTAGACGTGAAGGGAAACTAAAGGGAAACTTATGGCCAC
CGAAAATCATGGGATTGAGTTATATGAGAATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTCCAATCCTTCATGAGTGTCGGTAGGAGCAACTATGTTTGTTGTTTGTTTTGTTCTTCTGCTATTGTTTGCACGTCACTGGGGACGGGGCCTTGGTTTTATGA
CAAAGCATTGTTGTTGTTCGAGGAACCTAAGGGAGACATATGCAGTGATGATATGGACTTCAGGGCATCTGCAGAATCAATAGGCGGCCTAATTGGAAAGGTAGAGAAAG
GAGATATCAAGGATGACTTTGATCCGTCATGGGGGAGATTATTGAGAATTAAAATTCGAATTGATGTTCGGAAGGCATTGAAAAGAGGAATTTTTATGAAAGCAGGGAGC
AAGGGAATCGATAAGTGGATCCCGGTAACATACGAGAAGCTACCAGATTTTTGTTATGGTTGTGGATGTTTGGGACACATTATTAAGGAATGTGAGGATCCAAATGGCAA
TTGTGAGGAAGAAATATTGTACAGACCGTGGCTGCGCGAACCTGCAAGACTTAAAATTGAGGAAGACAGCTTTACTGGGGGAGGCAATTGGAGTAGAAGAAGAGGGAGAG
GTTGGAACAGTGGTCGTGTGCAATGGAGAAAGGAAGTATCGGAGGGGGAAGAGGATGATGACTCTGAATGGCAGCAAGACGAAGTGGAGGAGAAGCAAGGTCCGACGGAC
GTAACACGACGGAATGCTCCGACGCCGACGAGGTGTGAGAAACCAGTAATGGCAACATTTTCAAAAAAGGAAGGAGAAGATGTTAAGGATAATAAGAGTTATGATAATTG
CGGAAATCAATGGGGACGTGAAGGAGACACGATTAAGGAAGGATCGGTTATGATTGGGGGTGATATTCAGAGTAGACGTGAAGGGAAACTAAAGGGAAACTTATGGCCAC
CGAAAATCATGGGATTGAGTTATATGAGAATCTGA
Protein sequenceShow/hide protein sequence
MEFQSFMSVGRSNYVCCLFCSSAIVCTSLGTGPWFYDKALLLFEEPKGDICSDDMDFRASAESIGGLIGKVEKGDIKDDFDPSWGRLLRIKIRIDVRKALKRGIFMKAGS
KGIDKWIPVTYEKLPDFCYGCGCLGHIIKECEDPNGNCEEEILYRPWLREPARLKIEEDSFTGGGNWSRRRGRGWNSGRVQWRKEVSEGEEDDDSEWQQDEVEEKQGPTD
VTRRNAPTPTRCEKPVMATFSKKEGEDVKDNKSYDNCGNQWGREGDTIKEGSVMIGGDIQSRREGKLKGNLWPPKIMGLSYMRI