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Lag0000289 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000289
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr4:3041334..3041960
RNA-Seq ExpressionLag0000289
SyntenyLag0000289
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146774.1 uncharacterized protein LOC111015901 [Momordica charantia]6.2e-1936.65Show/hide
Query:  EKKAVAREARFELEEQRVYLVRISKELPPIEFTELEASCVHQPHNDALVVSLTIANAQVHGVLIDGGSSADVLSSNVFEAMKLGRET-------------
        ++KA  REAR  L +  VY   ++     IEF+E EA+ V  PHNDALV++L IANA+VH +L+DGGSS D+ S   ++AM LG E              
Subjt:  EKKAVAREARFELEEQRVYLVRISKELPPIEFTELEASCVHQPHNDALVVSLTIANAQVHGVLIDGGSSADVLSSNVFEAMKLGRET-------------

Query:  -------ETECSITSWLRRRK----------NCISAYNAIMGRPVLHELKVVASTYHQMLKFPT-------------SRECYFTEHKETNK
                 E  IT     +           +  S+YN I+ RP +H L+ + STYHQ +KFPT             SRECY+T  +  +K
Subjt:  -------ETECSITSWLRRRK----------NCISAYNAIMGRPVLHELKVVASTYHQMLKFPT-------------SRECYFTEHKETNK

XP_022150028.1 uncharacterized protein LOC111018300 [Momordica charantia]5.6e-2035.71Show/hide
Query:  RRVESEKKAVAREARFELEEQRVYLVRISKELPPIEFTELEASCVHQPHNDALVVSLTIANAQVHGVLIDGGSSADVLSSNVFEAMKLGR----------
        R    ++KA  RE R    +  +Y   ++K+   IEF+E EA+ +  PHND LV++L IANA+VH +L+DGGSSAD++S   ++AM LG           
Subjt:  RRVESEKKAVAREARFELEEQRVYLVRISKELPPIEFTELEASCVHQPHNDALVVSLTIANAQVHGVLIDGGSSADVLSSNVFEAMKLGR----------

Query:  ----------ETETECSITSWLRRRK----------NCISAYNAIMGRPVLHELKVVASTYHQMLKFPT-------------SRECYFTEHKETNK
                  E  TE ++T     +           +  S+YNAI+GRP +H LK + STYHQ + FPT             SRECY+T  K  ++
Subjt:  ----------ETETECSITSWLRRRK----------NCISAYNAIMGRPVLHELKVVASTYHQMLKFPT-------------SRECYFTEHKETNK

XP_022155186.1 uncharacterized protein LOC111022321 [Momordica charantia]5.1e-2136.5Show/hide
Query:  RRVESEKKAVAREARFELEEQRVYLVRISKELPPIEFTELEASCVHQPHNDALVVSLTIANAQVHGVLIDGGSSADVLSSNVFEAMKLGR----------
        R  E ++KA  REAR   ++  VY   I+ +   IEF+E EA+ +  PHNDALV++L IAN +VH +L+DGGSSAD++S   ++AM LG           
Subjt:  RRVESEKKAVAREARFELEEQRVYLVRISKELPPIEFTELEASCVHQPHNDALVVSLTIANAQVHGVLIDGGSSADVLSSNVFEAMKLGR----------

Query:  ----------ETETECSITSWLRRRK----------NCISAYNAIMGRPVLHELKVVASTYHQMLKFPT-------------SRECYFTEHKETNKQARR
                  E   E  +T     +           N  S+YNAI+GRP +H LK + STYHQ  KFPT             SRECY T  ++ ++ + +
Subjt:  ----------ETETECSITSWLRRRK----------NCISAYNAIMGRPVLHELKVVASTYHQMLKFPT-------------SRECYFTEHKETNKQARR

XP_022156748.1 uncharacterized protein LOC111023587 [Momordica charantia]4.0e-1835.68Show/hide
Query:  RVESEKKAVAREARFELEEQRVYLVRISKELPPIEFTELEASCVHQPHNDALVVSLTIANAQVHGVLIDGGSSADVLSSNVFEAMKLGR-----------
        R+  +KKA  REAR   E+  VY   I+     IEF+E EA+ +   HNDALV++L IAN +VH +L+DGGSSAD++S   ++AM L             
Subjt:  RVESEKKAVAREARFELEEQRVYLVRISKELPPIEFTELEASCVHQPHNDALVVSLTIANAQVHGVLIDGGSSADVLSSNVFEAMKLGR-----------

Query:  ---------ETETECSITSWLRRR----------KNCISAYNAIMGRPVLHELKVVASTYHQMLKFPT-------------SRECYFTEHKETNKQARR
                 E   E  +T     +           N  S+YN I+GR  +H LKV+ STYHQ +KFPT             SRECY+T  +  ++ + +
Subjt:  ---------ETETECSITSWLRRR----------KNCISAYNAIMGRPVLHELKVVASTYHQMLKFPT-------------SRECYFTEHKETNKQARR

XP_022158687.1 uncharacterized protein LOC111025147 [Momordica charantia]3.6e-1934.87Show/hide
Query:  EKKAVAREARFELEEQRVYLVRISKELPPIEFTELEASCVHQPHNDALVVSLTIANAQVHGVLIDGGSSADVLSSNVFEAMKLGRET--ETECSITSWLR
        ++KA  REAR  L + +VY   I+     IEF+E EA+ +  PHNDALV++L IAN +VH +L+DGGSSAD++S   ++ M LG +    +   +  + R
Subjt:  EKKAVAREARFELEEQRVYLVRISKELPPIEFTELEASCVHQPHNDALVVSLTIANAQVHGVLIDGGSSADVLSSNVFEAMKLGRET--ETECSITSWLR

Query:  RR----------------------------KNCISAYNAIMGRPVLHELKVVASTYHQMLKFPT-------------SRECYFTEHKETNKQARR
         R                             +  S+YNAI+GR  +H LK + STYHQ +KFPT             SRECY+T  +  ++ + +
Subjt:  RR----------------------------KNCISAYNAIMGRPVLHELKVVASTYHQMLKFPT-------------SRECYFTEHKETNKQARR

TrEMBL top hitse value%identityAlignment
A0A6J1CZ14 uncharacterized protein LOC1110159013.0e-1936.65Show/hide
Query:  EKKAVAREARFELEEQRVYLVRISKELPPIEFTELEASCVHQPHNDALVVSLTIANAQVHGVLIDGGSSADVLSSNVFEAMKLGRET-------------
        ++KA  REAR  L +  VY   ++     IEF+E EA+ V  PHNDALV++L IANA+VH +L+DGGSS D+ S   ++AM LG E              
Subjt:  EKKAVAREARFELEEQRVYLVRISKELPPIEFTELEASCVHQPHNDALVVSLTIANAQVHGVLIDGGSSADVLSSNVFEAMKLGRET-------------

Query:  -------ETECSITSWLRRRK----------NCISAYNAIMGRPVLHELKVVASTYHQMLKFPT-------------SRECYFTEHKETNK
                 E  IT     +           +  S+YN I+ RP +H L+ + STYHQ +KFPT             SRECY+T  +  +K
Subjt:  -------ETECSITSWLRRRK----------NCISAYNAIMGRPVLHELKVVASTYHQMLKFPT-------------SRECYFTEHKETNK

A0A6J1D8C9 uncharacterized protein LOC1110183002.7e-2035.71Show/hide
Query:  RRVESEKKAVAREARFELEEQRVYLVRISKELPPIEFTELEASCVHQPHNDALVVSLTIANAQVHGVLIDGGSSADVLSSNVFEAMKLGR----------
        R    ++KA  RE R    +  +Y   ++K+   IEF+E EA+ +  PHND LV++L IANA+VH +L+DGGSSAD++S   ++AM LG           
Subjt:  RRVESEKKAVAREARFELEEQRVYLVRISKELPPIEFTELEASCVHQPHNDALVVSLTIANAQVHGVLIDGGSSADVLSSNVFEAMKLGR----------

Query:  ----------ETETECSITSWLRRRK----------NCISAYNAIMGRPVLHELKVVASTYHQMLKFPT-------------SRECYFTEHKETNK
                  E  TE ++T     +           +  S+YNAI+GRP +H LK + STYHQ + FPT             SRECY+T  K  ++
Subjt:  ----------ETETECSITSWLRRRK----------NCISAYNAIMGRPVLHELKVVASTYHQMLKFPT-------------SRECYFTEHKETNK

A0A6J1DQY2 uncharacterized protein LOC1110223212.5e-2136.5Show/hide
Query:  RRVESEKKAVAREARFELEEQRVYLVRISKELPPIEFTELEASCVHQPHNDALVVSLTIANAQVHGVLIDGGSSADVLSSNVFEAMKLGR----------
        R  E ++KA  REAR   ++  VY   I+ +   IEF+E EA+ +  PHNDALV++L IAN +VH +L+DGGSSAD++S   ++AM LG           
Subjt:  RRVESEKKAVAREARFELEEQRVYLVRISKELPPIEFTELEASCVHQPHNDALVVSLTIANAQVHGVLIDGGSSADVLSSNVFEAMKLGR----------

Query:  ----------ETETECSITSWLRRRK----------NCISAYNAIMGRPVLHELKVVASTYHQMLKFPT-------------SRECYFTEHKETNKQARR
                  E   E  +T     +           N  S+YNAI+GRP +H LK + STYHQ  KFPT             SRECY T  ++ ++ + +
Subjt:  ----------ETETECSITSWLRRRK----------NCISAYNAIMGRPVLHELKVVASTYHQMLKFPT-------------SRECYFTEHKETNKQARR

A0A6J1DRG9 uncharacterized protein LOC1110235871.9e-1835.68Show/hide
Query:  RVESEKKAVAREARFELEEQRVYLVRISKELPPIEFTELEASCVHQPHNDALVVSLTIANAQVHGVLIDGGSSADVLSSNVFEAMKLGR-----------
        R+  +KKA  REAR   E+  VY   I+     IEF+E EA+ +   HNDALV++L IAN +VH +L+DGGSSAD++S   ++AM L             
Subjt:  RVESEKKAVAREARFELEEQRVYLVRISKELPPIEFTELEASCVHQPHNDALVVSLTIANAQVHGVLIDGGSSADVLSSNVFEAMKLGR-----------

Query:  ---------ETETECSITSWLRRR----------KNCISAYNAIMGRPVLHELKVVASTYHQMLKFPT-------------SRECYFTEHKETNKQARR
                 E   E  +T     +           N  S+YN I+GR  +H LKV+ STYHQ +KFPT             SRECY+T  +  ++ + +
Subjt:  ---------ETETECSITSWLRRR----------KNCISAYNAIMGRPVLHELKVVASTYHQMLKFPT-------------SRECYFTEHKETNKQARR

A0A6J1DXV4 uncharacterized protein LOC1110251471.8e-1934.87Show/hide
Query:  EKKAVAREARFELEEQRVYLVRISKELPPIEFTELEASCVHQPHNDALVVSLTIANAQVHGVLIDGGSSADVLSSNVFEAMKLGRET--ETECSITSWLR
        ++KA  REAR  L + +VY   I+     IEF+E EA+ +  PHNDALV++L IAN +VH +L+DGGSSAD++S   ++ M LG +    +   +  + R
Subjt:  EKKAVAREARFELEEQRVYLVRISKELPPIEFTELEASCVHQPHNDALVVSLTIANAQVHGVLIDGGSSADVLSSNVFEAMKLGRET--ETECSITSWLR

Query:  RR----------------------------KNCISAYNAIMGRPVLHELKVVASTYHQMLKFPT-------------SRECYFTEHKETNKQARR
         R                             +  S+YNAI+GR  +H LK + STYHQ +KFPT             SRECY+T  +  ++ + +
Subjt:  RR----------------------------KNCISAYNAIMGRPVLHELKVVASTYHQMLKFPT-------------SRECYFTEHKETNKQARR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAGAGTCGAATCAGAAAAGAAAGCAGTAGCCCGGGAGGCAAGGTTCGAGCTTGAAGAACAAAGGGTATATTTAGTGCGGATTTCAAAGGAGTTACCACCAATAGA
GTTCACTGAATTGGAAGCTTCTTGTGTTCATCAACCTCATAATGATGCACTAGTGGTAAGTTTGACGATTGCCAATGCCCAGGTTCACGGAGTTTTGATTGATGGTGGGA
GTTCAGCAGATGTTCTGTCTTCAAATGTGTTTGAAGCCATGAAGTTAGGAAGAGAAACTGAGACCGAGTGTAGCATCACTAGTTGGCTTCGAAGGAGAAAAAACTGCATT
TCTGCTTACAACGCTATTATGGGAAGGCCAGTGTTGCATGAATTGAAGGTTGTCGCATCGACCTACCACCAGATGTTGAAATTCCCTACTTCCCGGGAGTGTTACTTCAC
AGAACACAAAGAAACGAACAAACAAGCAAGACGATCTGACTCATGGGAAGATGAGGGCCAAGGCCGAGCAGGGGAACATCCTTCTCCCATGGAGCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGAGAGTCGAATCAGAAAAGAAAGCAGTAGCCCGGGAGGCAAGGTTCGAGCTTGAAGAACAAAGGGTATATTTAGTGCGGATTTCAAAGGAGTTACCACCAATAGA
GTTCACTGAATTGGAAGCTTCTTGTGTTCATCAACCTCATAATGATGCACTAGTGGTAAGTTTGACGATTGCCAATGCCCAGGTTCACGGAGTTTTGATTGATGGTGGGA
GTTCAGCAGATGTTCTGTCTTCAAATGTGTTTGAAGCCATGAAGTTAGGAAGAGAAACTGAGACCGAGTGTAGCATCACTAGTTGGCTTCGAAGGAGAAAAAACTGCATT
TCTGCTTACAACGCTATTATGGGAAGGCCAGTGTTGCATGAATTGAAGGTTGTCGCATCGACCTACCACCAGATGTTGAAATTCCCTACTTCCCGGGAGTGTTACTTCAC
AGAACACAAAGAAACGAACAAACAAGCAAGACGATCTGACTCATGGGAAGATGAGGGCCAAGGCCGAGCAGGGGAACATCCTTCTCCCATGGAGCATTGA
Protein sequenceShow/hide protein sequence
MRRVESEKKAVAREARFELEEQRVYLVRISKELPPIEFTELEASCVHQPHNDALVVSLTIANAQVHGVLIDGGSSADVLSSNVFEAMKLGRETETECSITSWLRRRKNCI
SAYNAIMGRPVLHELKVVASTYHQMLKFPTSRECYFTEHKETNKQARRSDSWEDEGQGRAGEHPSPMEH