; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000296 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000296
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr4:3109336..3115530
RNA-Seq ExpressionLag0000296
SyntenyLag0000296
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2547276.1 hypothetical protein F2Q70_00019745 [Brassica cretica]5.1e-0541.1Show/hide
Query:  LRLTARMEIQRVHVYSDSLNAIRMINGEIGEWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDAL
        L + A +EI  + +YSDSL  IR+IN ++ +  E+   + +IH +   F S+ FS++PR +NR+AD LAK  L
Subjt:  LRLTARMEIQRVHVYSDSLNAIRMINGEIGEWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDAL

TXG71894.1 hypothetical protein EZV62_000473 [Acer yangbiense]5.1e-0534.44Show/hide
Query:  GLRLTARMEIQRVHVYSDSLNAIRMINGEIGEWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALMHQQNMLWLENFPLWL
        GL L     +Q + + SDSLN +R+ NGEI    +V + I +I  L         SYIPR  NR A  +A+ A+  + +++  + +P+WL
Subjt:  GLRLTARMEIQRVHVYSDSLNAIRMINGEIGEWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALMHQQNMLWLENFPLWL

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]3.5e-0630.1Show/hide
Query:  GLRLTARMEIQRVHVYSDSLNAIRMINGEIGEWL-EVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALMHQQNMLWLENFPLWLLSMGNQSHD
        GL L  R+ + RV V +DSL A+ +I G+   W  E   W+ +I    + F  +CF ++ R+ N  A  L ++ +  +   LW  +FP+WL  +      
Subjt:  GLRLTARMEIQRVHVYSDSLNAIRMINGEIGEWL-EVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALMHQQNMLWLENFPLWLLSMGNQSHD

Query:  KSI
         S+
Subjt:  KSI

XP_026411123.1 uncharacterized protein LOC113306393 [Papaver somniferum]1.7e-0534.02Show/hide
Query:  MHGLRLTARMEIQRVHVYSDSLNAIRMINGEIG--EWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALMHQQNMLWLENFPLWLLSM
        +  ++L  RM+I+ + +  DSLN +  + G+IG  +W     +I +  +L K F     S++PR  N  AD LAKDA      + W  +FP WL+S+
Subjt:  MHGLRLTARMEIQRVHVYSDSLNAIRMINGEIG--EWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALMHQQNMLWLENFPLWLLSM

XP_026443317.1 uncharacterized protein LOC113343293 [Papaver somniferum]5.1e-0530.93Show/hide
Query:  MHGLRLTARMEIQRVHVYSDSLNAIRMINGEIG--EWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALMHQQNMLWLENFPLWLLSM
        +  +R      +Q++H+  D LN + +ING +G  +W    + IS+   L + F S    ++ R+ N  A++LAK A  ++ + +W   FPLWL S+
Subjt:  MHGLRLTARMEIQRVHVYSDSLNAIRMINGEIG--EWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALMHQQNMLWLENFPLWLLSM

TrEMBL top hitse value%identityAlignment
A0A5C7IFK3 RNase H domain-containing protein7.2e-0532.22Show/hide
Query:  GLRLTARMEIQRVHVYSDSLNAIRMINGEIGEWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALMHQQNMLWLENFPLWL
        G+ L     +Q + + SDSLN +R+ NGEI    +V + I +I  L      +  SYIPR  N  A  +A+ A+  + +++  + +P+WL
Subjt:  GLRLTARMEIQRVHVYSDSLNAIRMINGEIGEWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALMHQQNMLWLENFPLWL

A0A5C7IST2 RNase H domain-containing protein2.5e-0534.44Show/hide
Query:  GLRLTARMEIQRVHVYSDSLNAIRMINGEIGEWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALMHQQNMLWLENFPLWL
        GL L     +Q + + SDSLN +R+ NGEI    +V + I +I  L         SYIPR  NR A  +A+ A+  + +++  + +P+WL
Subjt:  GLRLTARMEIQRVHVYSDSLNAIRMINGEIGEWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALMHQQNMLWLENFPLWL

A0A5N5HMF8 RNase H domain-containing protein3.2e-0532.32Show/hide
Query:  GLRLTARMEIQRVHVYSDSLNAIRMINGEIGEWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALMHQQNMLWLENFPLWLLSMGNQSHD
        GLRL  R+    + V +DS+ AI    G+  ++  +R  +S+I +L   F    FSY+P   N  A  L K +L+H  +++W E  P  +   G+  HD
Subjt:  GLRLTARMEIQRVHVYSDSLNAIRMINGEIGEWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALMHQQNMLWLENFPLWLLSMGNQSHD

A0A699H0X4 Reverse transcriptase domain-containing protein1.6e-0439.19Show/hide
Query:  GLRLTARMEIQRVHVYSDS-LNAIRMINGEIGEWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDA
        GLR+ A+M +Q VHV  DS L AI+++   + +   +  ++ ++  L  GF +   S +PR KN+KADAL+K A
Subjt:  GLRLTARMEIQRVHVYSDS-LNAIRMINGEIGEWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDA

A0A6J1DZK3 uncharacterized protein LOC1110249681.7e-0630.1Show/hide
Query:  GLRLTARMEIQRVHVYSDSLNAIRMINGEIGEWL-EVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALMHQQNMLWLENFPLWLLSMGNQSHD
        GL L  R+ + RV V +DSL A+ +I G+   W  E   W+ +I    + F  +CF ++ R+ N  A  L ++ +  +   LW  +FP+WL  +      
Subjt:  GLRLTARMEIQRVHVYSDSLNAIRMINGEIGEWL-EVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALMHQQNMLWLENFPLWLLSMGNQSHD

Query:  KSI
         S+
Subjt:  KSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.7e-0434.62Show/hide
Query:  QRVHVYSDSLNAIRMINGEIGEWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALMHQQ---NMLWLEN
        +RV    D+     +ING    +  V +WI +IH   + F S+ F++I R  N  AD LAK  L +Q    N  W+ N
Subjt:  QRVHVYSDSLNAIRMINGEIGEWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALMHQQ---NMLWLEN

AT1G77815.1 BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G27870.1)9.2e-0535.9Show/hide
Query:  QRVHVYSDSLNAIRMINGEIGEWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALMHQQ---NMLWLEN
        +RV    D+     +ING    +  V +WI +IH   + F S+ F++I R  N  AD LAK  L +Q    N LW+ N
Subjt:  QRVHVYSDSLNAIRMINGEIGEWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALMHQQ---NMLWLEN

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.1e-0436.49Show/hide
Query:  LRLTARMEIQRVHVYSDSLNAIRMINGEIGEWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALM
        L+    + I ++ + SDS   I  I  E     E    I +I +L  GF  V FS++PR +NR AD LAK +L+
Subjt:  LRLTARMEIQRVHVYSDSLNAIRMINGEIGEWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGGACTAAGATTGACTGCACGCATGGAAATACAAAGAGTTCATGTGTACTCGGACTCTTTAAATGCAATTCGGATGATCAATGGAGAGATTGGAGAGTGG
CTGGAAGTTCGACACTGGATATCAGAAATTCATGATCTATGCAAAGGGTTCCTTTCAGTGTGTTTCTCTTATATCCCAAGGGATAAAAATAGGAAAGCAGATGCT
CTAGCGAAGGATGCGTTAATGCACCAGCAAAATATGTTGTGGTTAGAAAATTTTCCGCTATGGCTATTATCAATGGGTAACCAATCCCACGATAAGAGTATTAAG
AAGGATAGCTATGCACTCTACTCGTTACCACTAAACGACGAAGCCTTGAGCGGAAGGAGGGACTTGAACCCTCAACCTCAAAATCTCTCTCATAAAATTCATGAT
AATATGAATGAAATTCAAGGTTCCGACAACACAGGGCAAGGCACACATGTGGGCATGGCATCTAATCCAAATCCCATCATCGACAGGAGCAACTCTTGGAAATCC
ATTCTTGGAGGAATTGTTGAATTAGGAAGTCGATCGAGTATTTGGGACGCAAAAAGTGGCAACGAAAGCGAAGAAGAATCAAGTCGAGACCTGCAACAGCCCTTT
GATCCGAGAGACCAGTGTCAAGACACTGCCTTATTGGCGTCTCAACATTGTTGTAGGAGAGTTTCAAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATGGACTAAGATTGACTGCACGCATGGAAATACAAAGAGTTCATGTGTACTCGGACTCTTTAAATGCAATTCGGATGATCAATGGAGAGATTGGAGAGTGG
CTGGAAGTTCGACACTGGATATCAGAAATTCATGATCTATGCAAAGGGTTCCTTTCAGTGTGTTTCTCTTATATCCCAAGGGATAAAAATAGGAAAGCAGATGCT
CTAGCGAAGGATGCGTTAATGCACCAGCAAAATATGTTGTGGTTAGAAAATTTTCCGCTATGGCTATTATCAATGGGTAACCAATCCCACGATAAGAGTATTAAG
AAGGATAGCTATGCACTCTACTCGTTACCACTAAACGACGAAGCCTTGAGCGGAAGGAGGGACTTGAACCCTCAACCTCAAAATCTCTCTCATAAAATTCATGAT
AATATGAATGAAATTCAAGGTTCCGACAACACAGGGCAAGGCACACATGTGGGCATGGCATCTAATCCAAATCCCATCATCGACAGGAGCAACTCTTGGAAATCC
ATTCTTGGAGGAATTGTTGAATTAGGAAGTCGATCGAGTATTTGGGACGCAAAAAGTGGCAACGAAAGCGAAGAAGAATCAAGTCGAGACCTGCAACAGCCCTTT
GATCCGAGAGACCAGTGTCAAGACACTGCCTTATTGGCGTCTCAACATTGTTGTAGGAGAGTTTCAAGCTAG
Protein sequenceShow/hide protein sequence
MHGLRLTARMEIQRVHVYSDSLNAIRMINGEIGEWLEVRHWISEIHDLCKGFLSVCFSYIPRDKNRKADALAKDALMHQQNMLWLENFPLWLLSMGNQSHDKSIK
KDSYALYSLPLNDEALSGRRDLNPQPQNLSHKIHDNMNEIQGSDNTGQGTHVGMASNPNPIIDRSNSWKSILGGIVELGSRSSIWDAKSGNESEEESSRDLQQPF
DPRDQCQDTALLASQHCCRRVSS