; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000321 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000321
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr4:3972333..3973037
RNA-Seq ExpressionLag0000321
SyntenyLag0000321
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.5e-7469.53Show/hide
Query:  YGIERLKKLEATVFEASTDLADAEVWLNMLEKYFDVMSCTEERKVILATFLPQKEAEAWWKSILAMRNDAR-----------------------------
        YGIERLKKL ATVFE STD ADAE WLNMLEK FDVM+C EERKV LATFL QKEAE WWKSILA R+DAR                             
Subjt:  YGIERLKKLEATVFEASTDLADAEVWLNMLEKYFDVMSCTEERKVILATFLPQKEAEAWWKSILAMRNDAR-----------------------------

Query:  -----SLSVAEYERKYTELSRYANVIVASESDRCRTFERGLRFEIRTPVTVISKMTDFSQLVETALRVEHSIIEEKSVVEPSRGASIASGFRGCEQRRFT
             SLSVAEYERKYTELSRYA+VI+ASESDRCR FERGLRFEIRTPVT I+K T+FSQLVETALRVE SI EEKS VE SRG S ASGFRG EQRRFT
Subjt:  -----SLSVAEYERKYTELSRYANVIVASESDRCRTFERGLRFEIRTPVTVISKMTDFSQLVETALRVEHSIIEEKSVVEPSRGASIASGFRGCEQRRFT

Query:  PGMNVSGRQDFKRRSGGQSSRQMSSDSAYQRQS
        PG+N+S RQDFK RSGGQ+SR +S  S +QRQS
Subjt:  PGMNVSGRQDFKRRSGGQSSRQMSSDSAYQRQS

KAA0037805.1 uncharacterized protein E6C27_scaffold918G00190 [Cucumis melo var. makuwa]2.0e-7469.96Show/hide
Query:  YGIERLKKLEATVFEASTDLADAEVWLNMLEKYFDVMSCTEERKVILATFLPQKEAEAWWKSILAMRNDAR-----------------------------
        YGIERLKKL ATVFE STD ADAE WLNMLEK FDVM+C EERKV LATFL QKEAE WWKSILA R+DAR                             
Subjt:  YGIERLKKLEATVFEASTDLADAEVWLNMLEKYFDVMSCTEERKVILATFLPQKEAEAWWKSILAMRNDAR-----------------------------

Query:  -----SLSVAEYERKYTELSRYANVIVASESDRCRTFERGLRFEIRTPVTVISKMTDFSQLVETALRVEHSIIEEKSVVEPSRGASIASGFRGCEQRRFT
             SLSVAEYERKYTELSRYA+VI+ASESDRCR FERGLRFEIRTPVT I+K T+FSQLVETALRVE SI EEKSVVE SRG S ASGFRG EQRRFT
Subjt:  -----SLSVAEYERKYTELSRYANVIVASESDRCRTFERGLRFEIRTPVTVISKMTDFSQLVETALRVEHSIIEEKSVVEPSRGASIASGFRGCEQRRFT

Query:  PGMNVSGRQDFKRRSGGQSSRQMSSDSAYQRQS
        PG+N+S RQDFK RSGGQ+SR +S  S +QRQS
Subjt:  PGMNVSGRQDFKRRSGGQSSRQMSSDSAYQRQS

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.5e-7469.53Show/hide
Query:  YGIERLKKLEATVFEASTDLADAEVWLNMLEKYFDVMSCTEERKVILATFLPQKEAEAWWKSILAMRNDAR-----------------------------
        YGIERLKKL ATVFE STD ADAE WLNMLEK FDVM+C EERKV LATFL QKEAE WWKSILA R+DAR                             
Subjt:  YGIERLKKLEATVFEASTDLADAEVWLNMLEKYFDVMSCTEERKVILATFLPQKEAEAWWKSILAMRNDAR-----------------------------

Query:  -----SLSVAEYERKYTELSRYANVIVASESDRCRTFERGLRFEIRTPVTVISKMTDFSQLVETALRVEHSIIEEKSVVEPSRGASIASGFRGCEQRRFT
             SLSVAEYERKYTELSRYA+VI+ASESDRCR FERGLRFEIRTPVT I+K T+FSQLVETALRVE SI EEKS VE SRG S ASGFRG EQRRFT
Subjt:  -----SLSVAEYERKYTELSRYANVIVASESDRCRTFERGLRFEIRTPVTVISKMTDFSQLVETALRVEHSIIEEKSVVEPSRGASIASGFRGCEQRRFT

Query:  PGMNVSGRQDFKRRSGGQSSRQMSSDSAYQRQS
        PG+N+S RQDFK RSGGQ+SR +S  S +QRQS
Subjt:  PGMNVSGRQDFKRRSGGQSSRQMSSDSAYQRQS

TYK06334.1 putative polyprotein [Cucumis melo var. makuwa]7.5e-7469.53Show/hide
Query:  YGIERLKKLEATVFEASTDLADAEVWLNMLEKYFDVMSCTEERKVILATFLPQKEAEAWWKSILAMRNDAR-----------------------------
        YGIERLKKL ATVFE STD ADAE WLNMLEK FDVM+C EERKV LATFL QKEAE WWKSILA R+DAR                             
Subjt:  YGIERLKKLEATVFEASTDLADAEVWLNMLEKYFDVMSCTEERKVILATFLPQKEAEAWWKSILAMRNDAR-----------------------------

Query:  -----SLSVAEYERKYTELSRYANVIVASESDRCRTFERGLRFEIRTPVTVISKMTDFSQLVETALRVEHSIIEEKSVVEPSRGASIASGFRGCEQRRFT
             SLSVAEYERKYTELSRYA+VI+ASESDRCR FERGLRFEIRTPVT I+K T+FSQLVETALRVE SI EEKS VE SRG S ASGFRG EQRRFT
Subjt:  -----SLSVAEYERKYTELSRYANVIVASESDRCRTFERGLRFEIRTPVTVISKMTDFSQLVETALRVEHSIIEEKSVVEPSRGASIASGFRGCEQRRFT

Query:  PGMNVSGRQDFKRRSGGQSSRQMSSDSAYQRQS
        PG+N+S RQDFK RSGGQ+SR +S  S +QRQS
Subjt:  PGMNVSGRQDFKRRSGGQSSRQMSSDSAYQRQS

TYK27507.1 reverse transcriptase [Cucumis melo var. makuwa]7.5e-7469.53Show/hide
Query:  YGIERLKKLEATVFEASTDLADAEVWLNMLEKYFDVMSCTEERKVILATFLPQKEAEAWWKSILAMRNDAR-----------------------------
        YGIERLKKL ATVFE STD ADAE WLNMLEK FDVM+C EERKV LATFL QKEAE WWKSILA R+DAR                             
Subjt:  YGIERLKKLEATVFEASTDLADAEVWLNMLEKYFDVMSCTEERKVILATFLPQKEAEAWWKSILAMRNDAR-----------------------------

Query:  -----SLSVAEYERKYTELSRYANVIVASESDRCRTFERGLRFEIRTPVTVISKMTDFSQLVETALRVEHSIIEEKSVVEPSRGASIASGFRGCEQRRFT
             SLSVAEYERKYTELSRYA+VI+ASESDRCR FERGLRFEIRTPVT I+K T+FSQLVETALRVE SI EEKS VE SRG S ASGFRG EQRRFT
Subjt:  -----SLSVAEYERKYTELSRYANVIVASESDRCRTFERGLRFEIRTPVTVISKMTDFSQLVETALRVEHSIIEEKSVVEPSRGASIASGFRGCEQRRFT

Query:  PGMNVSGRQDFKRRSGGQSSRQMSSDSAYQRQS
        PG+N+S RQDFK RSGGQ+SR +S  S +QRQS
Subjt:  PGMNVSGRQDFKRRSGGQSSRQMSSDSAYQRQS

TrEMBL top hitse value%identityAlignment
A0A5A7T1Y5 Reverse transcriptase3.7e-7469.53Show/hide
Query:  YGIERLKKLEATVFEASTDLADAEVWLNMLEKYFDVMSCTEERKVILATFLPQKEAEAWWKSILAMRNDAR-----------------------------
        YGIERLKKL ATVFE STD ADAE WLNMLEK FDVM+C EERKV LATFL QKEAE WWKSILA R+DAR                             
Subjt:  YGIERLKKLEATVFEASTDLADAEVWLNMLEKYFDVMSCTEERKVILATFLPQKEAEAWWKSILAMRNDAR-----------------------------

Query:  -----SLSVAEYERKYTELSRYANVIVASESDRCRTFERGLRFEIRTPVTVISKMTDFSQLVETALRVEHSIIEEKSVVEPSRGASIASGFRGCEQRRFT
             SLSVAEYERKYTELSRYA+VI+ASESDRCR FERGLRFEIRTPVT I+K T+FSQLVETALRVE SI EEKS VE SRG S ASGFRG EQRRFT
Subjt:  -----SLSVAEYERKYTELSRYANVIVASESDRCRTFERGLRFEIRTPVTVISKMTDFSQLVETALRVEHSIIEEKSVVEPSRGASIASGFRGCEQRRFT

Query:  PGMNVSGRQDFKRRSGGQSSRQMSSDSAYQRQS
        PG+N+S RQDFK RSGGQ+SR +S  S +QRQS
Subjt:  PGMNVSGRQDFKRRSGGQSSRQMSSDSAYQRQS

A0A5A7T8K4 Retrotrans_gag domain-containing protein9.6e-7569.96Show/hide
Query:  YGIERLKKLEATVFEASTDLADAEVWLNMLEKYFDVMSCTEERKVILATFLPQKEAEAWWKSILAMRNDAR-----------------------------
        YGIERLKKL ATVFE STD ADAE WLNMLEK FDVM+C EERKV LATFL QKEAE WWKSILA R+DAR                             
Subjt:  YGIERLKKLEATVFEASTDLADAEVWLNMLEKYFDVMSCTEERKVILATFLPQKEAEAWWKSILAMRNDAR-----------------------------

Query:  -----SLSVAEYERKYTELSRYANVIVASESDRCRTFERGLRFEIRTPVTVISKMTDFSQLVETALRVEHSIIEEKSVVEPSRGASIASGFRGCEQRRFT
             SLSVAEYERKYTELSRYA+VI+ASESDRCR FERGLRFEIRTPVT I+K T+FSQLVETALRVE SI EEKSVVE SRG S ASGFRG EQRRFT
Subjt:  -----SLSVAEYERKYTELSRYANVIVASESDRCRTFERGLRFEIRTPVTVISKMTDFSQLVETALRVEHSIIEEKSVVEPSRGASIASGFRGCEQRRFT

Query:  PGMNVSGRQDFKRRSGGQSSRQMSSDSAYQRQS
        PG+N+S RQDFK RSGGQ+SR +S  S +QRQS
Subjt:  PGMNVSGRQDFKRRSGGQSSRQMSSDSAYQRQS

A0A5A7U2V7 Reverse transcriptase3.7e-7469.53Show/hide
Query:  YGIERLKKLEATVFEASTDLADAEVWLNMLEKYFDVMSCTEERKVILATFLPQKEAEAWWKSILAMRNDAR-----------------------------
        YGIERLKKL ATVFE STD ADAE WLNMLEK FDVM+C EERKV LATFL QKEAE WWKSILA R+DAR                             
Subjt:  YGIERLKKLEATVFEASTDLADAEVWLNMLEKYFDVMSCTEERKVILATFLPQKEAEAWWKSILAMRNDAR-----------------------------

Query:  -----SLSVAEYERKYTELSRYANVIVASESDRCRTFERGLRFEIRTPVTVISKMTDFSQLVETALRVEHSIIEEKSVVEPSRGASIASGFRGCEQRRFT
             SLSVAEYERKYTELSRYA+VI+ASESDRCR FERGLRFEIRTPVT I+K T+FSQLVETALRVE SI EEKS VE SRG S ASGFRG EQRRFT
Subjt:  -----SLSVAEYERKYTELSRYANVIVASESDRCRTFERGLRFEIRTPVTVISKMTDFSQLVETALRVEHSIIEEKSVVEPSRGASIASGFRGCEQRRFT

Query:  PGMNVSGRQDFKRRSGGQSSRQMSSDSAYQRQS
        PG+N+S RQDFK RSGGQ+SR +S  S +QRQS
Subjt:  PGMNVSGRQDFKRRSGGQSSRQMSSDSAYQRQS

A0A5D3BHI1 Reverse transcriptase3.7e-7469.53Show/hide
Query:  YGIERLKKLEATVFEASTDLADAEVWLNMLEKYFDVMSCTEERKVILATFLPQKEAEAWWKSILAMRNDAR-----------------------------
        YGIERLKKL ATVFE STD ADAE WLNMLEK FDVM+C EERKV LATFL QKEAE WWKSILA R+DAR                             
Subjt:  YGIERLKKLEATVFEASTDLADAEVWLNMLEKYFDVMSCTEERKVILATFLPQKEAEAWWKSILAMRNDAR-----------------------------

Query:  -----SLSVAEYERKYTELSRYANVIVASESDRCRTFERGLRFEIRTPVTVISKMTDFSQLVETALRVEHSIIEEKSVVEPSRGASIASGFRGCEQRRFT
             SLSVAEYERKYTELSRYA+VI+ASESDRCR FERGLRFEIRTPVT I+K T+FSQLVETALRVE SI EEKS VE SRG S ASGFRG EQRRFT
Subjt:  -----SLSVAEYERKYTELSRYANVIVASESDRCRTFERGLRFEIRTPVTVISKMTDFSQLVETALRVEHSIIEEKSVVEPSRGASIASGFRGCEQRRFT

Query:  PGMNVSGRQDFKRRSGGQSSRQMSSDSAYQRQS
        PG+N+S RQDFK RSGGQ+SR +S  S +QRQS
Subjt:  PGMNVSGRQDFKRRSGGQSSRQMSSDSAYQRQS

A0A5D3BS67 Reverse transcriptase3.7e-7469.53Show/hide
Query:  YGIERLKKLEATVFEASTDLADAEVWLNMLEKYFDVMSCTEERKVILATFLPQKEAEAWWKSILAMRNDAR-----------------------------
        YGIERLKKL ATVFE STD ADAE WLNMLEK FDVM+C EERKV LATFL QKEAE WWKSILA R+DAR                             
Subjt:  YGIERLKKLEATVFEASTDLADAEVWLNMLEKYFDVMSCTEERKVILATFLPQKEAEAWWKSILAMRNDAR-----------------------------

Query:  -----SLSVAEYERKYTELSRYANVIVASESDRCRTFERGLRFEIRTPVTVISKMTDFSQLVETALRVEHSIIEEKSVVEPSRGASIASGFRGCEQRRFT
             SLSVAEYERKYTELSRYA+VI+ASESDRCR FERGLRFEIRTPVT I+K T+FSQLVETALRVE SI EEKS VE SRG S ASGFRG EQRRFT
Subjt:  -----SLSVAEYERKYTELSRYANVIVASESDRCRTFERGLRFEIRTPVTVISKMTDFSQLVETALRVEHSIIEEKSVVEPSRGASIASGFRGCEQRRFT

Query:  PGMNVSGRQDFKRRSGGQSSRQMSSDSAYQRQS
        PG+N+S RQDFK RSGGQ+SR +S  S +QRQS
Subjt:  PGMNVSGRQDFKRRSGGQSSRQMSSDSAYQRQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGGGATAGAACGGTTGAAGAAATTAGAAGCCACAGTGTTTGAGGCTTCCACGGATTTGGCTGACGCCGAGGTTTGGTTAAATATGCTTGAGAAATACTTTGATGT
GATGAGTTGTACTGAGGAACGAAAAGTCATATTAGCCACATTCCTGCCGCAGAAGGAGGCGGAGGCATGGTGGAAATCAATTTTAGCCATGCGCAATGATGCACGGTCAC
TTTCGGTGGCCGAGTACGAGAGAAAGTATACAGAGCTTTCGCGGTATGCTAATGTGATTGTGGCATCTGAGAGTGACAGGTGTCGAACGTTTGAAAGAGGGCTACGTTTT
GAGATACGTACCCCGGTTACAGTGATTTCTAAGATGACGGATTTTTCTCAGTTAGTAGAGACTGCCCTACGTGTGGAGCACAGTATAATAGAGGAGAAGTCAGTAGTGGA
GCCTAGTCGTGGAGCTTCAATAGCTAGTGGTTTCCGAGGTTGTGAGCAACGGAGGTTTACACCTGGAATGAATGTTTCAGGCCGTCAAGACTTTAAGCGTCGGTCTGGTG
GCCAGTCATCGAGGCAGATGAGTTCAGATAGTGCCTATCAGAGGCAGAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTATGGGATAGAACGGTTGAAGAAATTAGAAGCCACAGTGTTTGAGGCTTCCACGGATTTGGCTGACGCCGAGGTTTGGTTAAATATGCTTGAGAAATACTTTGATGT
GATGAGTTGTACTGAGGAACGAAAAGTCATATTAGCCACATTCCTGCCGCAGAAGGAGGCGGAGGCATGGTGGAAATCAATTTTAGCCATGCGCAATGATGCACGGTCAC
TTTCGGTGGCCGAGTACGAGAGAAAGTATACAGAGCTTTCGCGGTATGCTAATGTGATTGTGGCATCTGAGAGTGACAGGTGTCGAACGTTTGAAAGAGGGCTACGTTTT
GAGATACGTACCCCGGTTACAGTGATTTCTAAGATGACGGATTTTTCTCAGTTAGTAGAGACTGCCCTACGTGTGGAGCACAGTATAATAGAGGAGAAGTCAGTAGTGGA
GCCTAGTCGTGGAGCTTCAATAGCTAGTGGTTTCCGAGGTTGTGAGCAACGGAGGTTTACACCTGGAATGAATGTTTCAGGCCGTCAAGACTTTAAGCGTCGGTCTGGTG
GCCAGTCATCGAGGCAGATGAGTTCAGATAGTGCCTATCAGAGGCAGAGCTAG
Protein sequenceShow/hide protein sequence
MYGIERLKKLEATVFEASTDLADAEVWLNMLEKYFDVMSCTEERKVILATFLPQKEAEAWWKSILAMRNDARSLSVAEYERKYTELSRYANVIVASESDRCRTFERGLRF
EIRTPVTVISKMTDFSQLVETALRVEHSIIEEKSVVEPSRGASIASGFRGCEQRRFTPGMNVSGRQDFKRRSGGQSSRQMSSDSAYQRQS