; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000348 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000348
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr4:4822285..4822590
RNA-Seq ExpressionLag0000348
SyntenyLag0000348
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034814.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-1043.43Show/hide
Query:  RRKKGKKYTRRLEPILEESEEHIQPPHSITLKEFFPRNFLAGIGQTVTCHVVNVTEDDKVTSIASEAITKLEDLPSFSVDDLLSLPQETKNTLIEVLKD
        +R+  +K  R+  PI+EESE   +P   I LK+FFP+NF   I   V+CH  ++TE+D   S A E   K EDL    ++DLL+L +E K+T+IE+LK+
Subjt:  RRKKGKKYTRRLEPILEESEEHIQPPHSITLKEFFPRNFLAGIGQTVTCHVVNVTEDDKVTSIASEAITKLEDLPSFSVDDLLSLPQETKNTLIEVLKD

KAA0043275.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.7e-1145.45Show/hide
Query:  RRKKGKKYTRRLEPILEESEEHIQPPHSITLKEFFPRNFLAGIGQTVTCHVVNVTEDDKVTSIASEAITKLEDLPSFSVDDLLSLPQETKNTLIEVLKD
        +R+K +K  R+L PI+EESEE  +    ITLK+FF  NF   I   V CH +  T+DD   S + E   K EDL S  ++DLL+L QE K+T++E+LK+
Subjt:  RRKKGKKYTRRLEPILEESEEHIQPPHSITLKEFFPRNFLAGIGQTVTCHVVNVTEDDKVTSIASEAITKLEDLPSFSVDDLLSLPQETKNTLIEVLKD

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]3.9e-1043.43Show/hide
Query:  RRKKGKKYTRRLEPILEESEEHIQPPHSITLKEFFPRNFLAGIGQTVTCHVVNVTEDDKVTSIASEAITKLEDLPSFSVDDLLSLPQETKNTLIEVLKD
        +R+  +K  R+  PI+EESE   +P   I LK+FFP+NF   I   V+CH  + TE+D   S A E   K EDL    ++DLL+L +E K+T+IE+LK+
Subjt:  RRKKGKKYTRRLEPILEESEEHIQPPHSITLKEFFPRNFLAGIGQTVTCHVVNVTEDDKVTSIASEAITKLEDLPSFSVDDLLSLPQETKNTLIEVLKD

KAA0054202.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-1044.9Show/hide
Query:  RKKGKKYTRRLEPILEESEEHIQPPHSITLKEFFPRNFLAGIGQTVTCHVVNVTEDDKVTSIASEAITKLEDLPSFSVDDLLSLPQETKNTLIEVLKD
        R+  +K  R+  PI++ESE   +P  SI LK FFP+NF   I   V+CH  + TE+D   S A E   K EDL   S++DLL+L +E K+T+IE+LK+
Subjt:  RKKGKKYTRRLEPILEESEEHIQPPHSITLKEFFPRNFLAGIGQTVTCHVVNVTEDDKVTSIASEAITKLEDLPSFSVDDLLSLPQETKNTLIEVLKD

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]3.9e-1043.43Show/hide
Query:  RRKKGKKYTRRLEPILEESEEHIQPPHSITLKEFFPRNFLAGIGQTVTCHVVNVTEDDKVTSIASEAITKLEDLPSFSVDDLLSLPQETKNTLIEVLKD
        +R+  +K  R+  PI+EESE   +P   I LK+FFP+NF   I   V+CH  + TE+D   S A E   K EDL    ++DLL+L +E K+T+IE+LK+
Subjt:  RRKKGKKYTRRLEPILEESEEHIQPPHSITLKEFFPRNFLAGIGQTVTCHVVNVTEDDKVTSIASEAITKLEDLPSFSVDDLLSLPQETKNTLIEVLKD

TrEMBL top hitse value%identityAlignment
A0A5A7SUA1 Ty3-gypsy retrotransposon protein8.4e-1143.43Show/hide
Query:  RRKKGKKYTRRLEPILEESEEHIQPPHSITLKEFFPRNFLAGIGQTVTCHVVNVTEDDKVTSIASEAITKLEDLPSFSVDDLLSLPQETKNTLIEVLKD
        +R+  +K  R+  PI+EESE   +P   I LK+FFP+NF   I   V+CH  ++TE+D   S A E   K EDL    ++DLL+L +E K+T+IE+LK+
Subjt:  RRKKGKKYTRRLEPILEESEEHIQPPHSITLKEFFPRNFLAGIGQTVTCHVVNVTEDDKVTSIASEAITKLEDLPSFSVDDLLSLPQETKNTLIEVLKD

A0A5A7TPD2 Ty3-gypsy retrotransposon protein1.3e-1145.45Show/hide
Query:  RRKKGKKYTRRLEPILEESEEHIQPPHSITLKEFFPRNFLAGIGQTVTCHVVNVTEDDKVTSIASEAITKLEDLPSFSVDDLLSLPQETKNTLIEVLKD
        +R+K +K  R+L PI+EESEE  +    ITLK+FF  NF   I   V CH +  T+DD   S + E   K EDL S  ++DLL+L QE K+T++E+LK+
Subjt:  RRKKGKKYTRRLEPILEESEEHIQPPHSITLKEFFPRNFLAGIGQTVTCHVVNVTEDDKVTSIASEAITKLEDLPSFSVDDLLSLPQETKNTLIEVLKD

A0A5A7TZU9 Ribonuclease H1.9e-1043.43Show/hide
Query:  RRKKGKKYTRRLEPILEESEEHIQPPHSITLKEFFPRNFLAGIGQTVTCHVVNVTEDDKVTSIASEAITKLEDLPSFSVDDLLSLPQETKNTLIEVLKD
        +R+  +K  R+  PI+EESE   +P   I LK+FFP+NF   I   V+CH  + TE+D   S A E   K EDL    ++DLL+L +E K+T+IE+LK+
Subjt:  RRKKGKKYTRRLEPILEESEEHIQPPHSITLKEFFPRNFLAGIGQTVTCHVVNVTEDDKVTSIASEAITKLEDLPSFSVDDLLSLPQETKNTLIEVLKD

A0A5A7VE63 Uncharacterized protein1.9e-1043.43Show/hide
Query:  RRKKGKKYTRRLEPILEESEEHIQPPHSITLKEFFPRNFLAGIGQTVTCHVVNVTEDDKVTSIASEAITKLEDLPSFSVDDLLSLPQETKNTLIEVLKD
        +R+  KK  R+  PI+EESE   +P   I LK+FFP+NF   I   V+CH  + TE+D   S + E   K EDL    ++DLL+L +E K+T+IE+LK+
Subjt:  RRKKGKKYTRRLEPILEESEEHIQPPHSITLKEFFPRNFLAGIGQTVTCHVVNVTEDDKVTSIASEAITKLEDLPSFSVDDLLSLPQETKNTLIEVLKD

A0A5D3CUG5 Ty3-gypsy retrotransposon protein8.4e-1144.9Show/hide
Query:  RKKGKKYTRRLEPILEESEEHIQPPHSITLKEFFPRNFLAGIGQTVTCHVVNVTEDDKVTSIASEAITKLEDLPSFSVDDLLSLPQETKNTLIEVLKD
        R+  +K  R+  PI++ESE   +P  SI LK FFP+NF   I   V+CH  + TE+D   S A E   K EDL   S++DLL+L +E K+T+IE+LK+
Subjt:  RKKGKKYTRRLEPILEESEEHIQPPHSITLKEFFPRNFLAGIGQTVTCHVVNVTEDDKVTSIASEAITKLEDLPSFSVDDLLSLPQETKNTLIEVLKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGAAGGAAAAAAGGGAAGAAGTATACGAGAAGGCTCGAGCCTATCCTAGAGGAAAGTGAGGAGCATATCCAACCTCCACATTCAATAACTCTAAAAGAATTCTT
CCCAAGAAATTTTCTAGCAGGAATCGGTCAAACTGTTACATGTCACGTTGTCAATGTGACAGAAGATGATAAAGTCACCTCGATTGCGTCAGAAGCCATCACGAAGCTGG
AAGACCTACCTTCCTTTAGTGTAGATGATTTACTATCGCTCCCTCAAGAGACGAAGAATACTCTCATCGAAGTGTTAAAGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCGAAGGAAAAAAGGGAAGAAGTATACGAGAAGGCTCGAGCCTATCCTAGAGGAAAGTGAGGAGCATATCCAACCTCCACATTCAATAACTCTAAAAGAATTCTT
CCCAAGAAATTTTCTAGCAGGAATCGGTCAAACTGTTACATGTCACGTTGTCAATGTGACAGAAGATGATAAAGTCACCTCGATTGCGTCAGAAGCCATCACGAAGCTGG
AAGACCTACCTTCCTTTAGTGTAGATGATTTACTATCGCTCCCTCAAGAGACGAAGAATACTCTCATCGAAGTGTTAAAGGATTGA
Protein sequenceShow/hide protein sequence
MPRRKKGKKYTRRLEPILEESEEHIQPPHSITLKEFFPRNFLAGIGQTVTCHVVNVTEDDKVTSIASEAITKLEDLPSFSVDDLLSLPQETKNTLIEVLKD