; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000358 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000358
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA ligase
Genome locationchr4:5038524..5038832
RNA-Seq ExpressionLag0000358
SyntenyLag0000358
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006266 - DNA ligation (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003910 - DNA ligase (ATP) activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR012309 - DNA ligase, ATP-dependent, C-terminal
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064112.1 DNA ligase 1 isoform X2 [Cucumis melo var. makuwa]3.4e-4691Show/hide
Query:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVAS
        MKE+FSGDKIL KKP YY+TAEVPD+WFLP+VVWEIRGADLTVSPVHQAAVGLVHP RGISIRFPRFIRS+PDRNPEECSTATDIAEMFNSQTRK+DVAS
Subjt:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVAS

XP_008444061.1 PREDICTED: DNA ligase 1 isoform X1 [Cucumis melo]3.4e-4691Show/hide
Query:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVAS
        MKE+FSGDKIL KKP YY+TAEVPD+WFLP+VVWEIRGADLTVSPVHQAAVGLVHP RGISIRFPRFIRS+PDRNPEECSTATDIAEMFNSQTRK+DVAS
Subjt:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVAS

XP_008444062.1 PREDICTED: DNA ligase 1 isoform X2 [Cucumis melo]3.4e-4691Show/hide
Query:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVAS
        MKE+FSGDKIL KKP YY+TAEVPD+WFLP+VVWEIRGADLTVSPVHQAAVGLVHP RGISIRFPRFIRS+PDRNPEECSTATDIAEMFNSQTRK+DVAS
Subjt:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVAS

XP_038878216.1 DNA ligase 6-like isoform X1 [Benincasa hispida]2.6e-4690.2Show/hide
Query:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVAS
        MKE+FSGD IL KKPAYYQTAEVPD+WFLP+ VWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRS+PDRNPEECSTA DIAEMFNSQTRK+DVAS
Subjt:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVAS

Query:  VD
         D
Subjt:  VD

XP_039054170.1 DNA ligase 6-like isoform X1 [Hibiscus syriacus]9.2e-4486.73Show/hide
Query:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDV
        MKE+FSGD+IL+KKPAYYQTAEVPD+WF PE+VWEIRGAD TVSPVHQAA+GLVHPSRGIS+RFPRFIRS+ DRNPEECSTATDIAEMF+SQTRK+DV
Subjt:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDV

TrEMBL top hitse value%identityAlignment
A0A1S3B9K2 DNA ligase1.6e-4691Show/hide
Query:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVAS
        MKE+FSGDKIL KKP YY+TAEVPD+WFLP+VVWEIRGADLTVSPVHQAAVGLVHP RGISIRFPRFIRS+PDRNPEECSTATDIAEMFNSQTRK+DVAS
Subjt:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVAS

A0A1S3BA94 DNA ligase1.6e-4691Show/hide
Query:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVAS
        MKE+FSGDKIL KKP YY+TAEVPD+WFLP+VVWEIRGADLTVSPVHQAAVGLVHP RGISIRFPRFIRS+PDRNPEECSTATDIAEMFNSQTRK+DVAS
Subjt:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVAS

A0A5D3DXM0 DNA ligase 1 isoform X21.6e-4691Show/hide
Query:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVAS
        MKE+FSGDKIL KKP YY+TAEVPD+WFLP+VVWEIRGADLTVSPVHQAAVGLVHP RGISIRFPRFIRS+PDRNPEECSTATDIAEMFNSQTRK+DVAS
Subjt:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVAS

A0A6A2WAQ2 DNA ligase4.5e-4486.73Show/hide
Query:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDV
        MKE+FSGD+IL+KKPAYYQTAEVPD+WF PE+VWEIRGAD TVSPVHQAA+GLVHPSRGIS+RFPRFIRS+ DRNPEECSTATDIAEMF+SQTRK+DV
Subjt:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDV

A0A6J1DXE4 DNA ligase7.6e-4487Show/hide
Query:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVAS
        MKE+FSGDKIL KKP YY+TAE PD+WFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRS+ DRNPEECSTATDI  MFNSQTRK+DV +
Subjt:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVAS

SwissProt top hitse value%identityAlignment
F4HPZ9 DNA ligase 62.2e-4074Show/hide
Query:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVAS
        MKE++S DKIL+KKP YY+T E PD+WF  EVVWEIRGAD TVSPVH A++GLVHPSRGIS+RFPRFI  + DRNPEECSTATDIAEMF++QTRK+++ S
Subjt:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVAS

P51892 DNA ligase 16.9e-1841Show/hide
Query:  FSGDKILSKKPAYYQ--TAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVASVD
        F  D ++    +YY+  +A  PD WF P  VWE++ ADL++SPVH+AA+GLV   +GIS+RFPRF+R   D+ PEE + +  +A+++  Q +  + +S +
Subjt:  FSGDKILSKKPAYYQ--TAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVASVD

Q42572 DNA ligase 11.8e-1844.19Show/hide
Query:  KILSKKPAYYQTAEV--PDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQ
        ++++    YY+  +   PD+WF P  VWE++ ADLT+SPVH+AA G+V P +GIS+RFPR +R   D+ PEE +++  IA+++ +Q
Subjt:  KILSKKPAYYQTAEV--PDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQ

Q6L195 DNA ligase6.3e-1943.96Show/hide
Query:  GDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKID
        GDKI+ KKPA   ++  PD W  P +V EIRGA++TVSPVH  A+ ++    G+++RFPR I+   D+ PE+ +T  +I EM+ +Q + I+
Subjt:  GDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKID

Q869E1 DNA ligase 19.0e-1846.43Show/hide
Query:  PDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMF-----NSQTRKIDVASVD
        PD+WF P  VWE+  ADL++SPVH AA G++ P++GI++RFPRFIR  PD++PE+ +++  + +M+     NSQ+ KI+    D
Subjt:  PDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMF-----NSQTRKIDVASVD

Arabidopsis top hitse value%identityAlignment
AT1G08130.1 DNA ligase 11.3e-1944.19Show/hide
Query:  KILSKKPAYYQTAEV--PDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQ
        ++++    YY+  +   PD+WF P  VWE++ ADLT+SPVH+AA G+V P +GIS+RFPR +R   D+ PEE +++  IA+++ +Q
Subjt:  KILSKKPAYYQTAEV--PDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQ

AT1G49250.1 ATP-dependent DNA ligase2.0e-2048.84Show/hide
Query:  KILSKKPAYYQTAE--VPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQ
        K+++    YYQ      PD+W  P  VWE++ ADLTVSPV++ A+G+V P +GIS+RFPR +R   D+NPEE +T+  IAEM+ +Q
Subjt:  KILSKKPAYYQTAE--VPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQ

AT1G66730.1 DNA LIGASE 61.6e-4174Show/hide
Query:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVAS
        MKE++S DKIL+KKP YY+T E PD+WF  EVVWEIRGAD TVSPVH A++GLVHPSRGIS+RFPRFI  + DRNPEECSTATDIAEMF++QTRK+++ S
Subjt:  MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAATATTTTTCTGGGGATAAGATTTTGTCTAAAAAGCCAGCTTACTATCAAACTGCTGAGGTTCCTGATTTGTGGTTCTTGCCCGAAGTTGTTTGGGAAATTAG
AGGTGCAGACTTAACAGTGTCACCAGTTCACCAGGCTGCTGTAGGTCTAGTTCATCCTTCTCGTGGCATCTCAATCAGGTTTCCGAGATTTATCCGTTCGCTTCCTGATA
GAAATCCTGAAGAATGTAGCACGGCTACAGATATAGCCGAAATGTTTAACTCTCAGACGAGGAAGATAGATGTTGCATCAGTAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAATATTTTTCTGGGGATAAGATTTTGTCTAAAAAGCCAGCTTACTATCAAACTGCTGAGGTTCCTGATTTGTGGTTCTTGCCCGAAGTTGTTTGGGAAATTAG
AGGTGCAGACTTAACAGTGTCACCAGTTCACCAGGCTGCTGTAGGTCTAGTTCATCCTTCTCGTGGCATCTCAATCAGGTTTCCGAGATTTATCCGTTCGCTTCCTGATA
GAAATCCTGAAGAATGTAGCACGGCTACAGATATAGCCGAAATGTTTAACTCTCAGACGAGGAAGATAGATGTTGCATCAGTAGATTGA
Protein sequenceShow/hide protein sequence
MKEYFSGDKILSKKPAYYQTAEVPDLWFLPEVVWEIRGADLTVSPVHQAAVGLVHPSRGISIRFPRFIRSLPDRNPEECSTATDIAEMFNSQTRKIDVASVD