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Lag0000369 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000369
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr4:5170079..5174521
RNA-Seq ExpressionLag0000369
SyntenyLag0000369
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032104.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-0550.94Show/hide
Query:  MISIMMVDVD-SDERMTEMEGKFNLLIKAIKERDYKIAYLKNQLQNQEIAEST
        ++S+M +DVD S++RMTE+E K N+L+ A+KE+DY+IA LKN ++++++AES+
Subjt:  MISIMMVDVD-SDERMTEMEGKFNLLIKAIKERDYKIAYLKNQLQNQEIAEST

KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]3.0e-0631.31Show/hide
Query:  STWNDKLGIGGLEWIVRNSEGSLVCFGMQKIYKNWPIKILEGKAVLEGLK---VISDTCNRRSIPLEVETDTLEVVNALIGRSEDCSDLKTFTDQINEL
        ++W+++ G GG+ W++ +S GS +C   +++ + W +K+LEGKA++EGLK   +I +T +    P+      LE+   L     D  +L    D+I +L
Subjt:  STWNDKLGIGGLEWIVRNSEGSLVCFGMQKIYKNWPIKILEGKAVLEGLK---VISDTCNRRSIPLEVETDTLEVVNALIGRSEDCSDLKTFTDQINEL

TYJ99754.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-0557.69Show/hide
Query:  ISIMMVDVD-SDERMTEMEGKFNLLIKAIKERDYKIAYLKNQLQNQEIAEST
        +SIM  DVD SD RMTE+E K N+L+KA++ERDY+IA LKN +++++ AES+
Subjt:  ISIMMVDVD-SDERMTEMEGKFNLLIKAIKERDYKIAYLKNQLQNQEIAEST

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.5e-0527.56Show/hide
Query:  STWNDKLGIGGLEWIVRNSEGSLVCFGMQKIYKNWPIKILEGKAVLEGLKVISDTCNRRSIPLEVETDTLEVVNALIGRSEDCSDLKTFTDQINELASKS
        + W      GG+ WI+R+ +G ++    + I     I  LE  A+ EGL+ I     R   P+ +E+D+LE ++ L  + +D +++    ++I ++    
Subjt:  STWNDKLGIGGLEWIVRNSEGSLVCFGMQKIYKNWPIKILEGKAVLEGLKVISDTCNRRSIPLEVETDTLEVVNALIGRSEDCSDLKTFTDQINELASKS

Query:  FGMEFRHCSKLLNTKAPCVARKAMDLD
          +  RH S+  N  A  +AR+AM+ D
Subjt:  FGMEFRHCSKLLNTKAPCVARKAMDLD

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.0e-0630.83Show/hide
Query:  AESTWNDKLGIGGLEWIVRNSEGSLVCFGMQKIYKNWPIKILEGKAVLEGLKVISDTCNRRSIPLEVETDTLEVVNALIGRSEDCS-------DLKTFTD
        A+++W+D    GG+ WI+R+ +G +V  G + +     +K+LE  A+LEGL+ +++    R  PL +ETD+ EV + L  + ED +       ++    D
Subjt:  AESTWNDKLGIGGLEWIVRNSEGSLVCFGMQKIYKNWPIKILEGKAVLEGLKVISDTCNRRSIPLEVETDTLEVVNALIGRSEDCS-------DLKTFTD

Query:  QINELASKSFGMEFRHCSKLLNTKAPCVARKAM
            LA    G E   C+  L  +A  V R++M
Subjt:  QINELASKSFGMEFRHCSKLLNTKAPCVARKAM

TrEMBL top hitse value%identityAlignment
A0A5A7SLN5 Ty3-gypsy retrotransposon protein1.2e-0550.94Show/hide
Query:  MISIMMVDVD-SDERMTEMEGKFNLLIKAIKERDYKIAYLKNQLQNQEIAEST
        ++S+M +DVD S++RMTE+E K N+L+ A+KE+DY+IA LKN ++++++AES+
Subjt:  MISIMMVDVD-SDERMTEMEGKFNLLIKAIKERDYKIAYLKNQLQNQEIAEST

A0A5A7SV13 Ty3-gypsy retrotransposon protein2.1e-0542.03Show/hide
Query:  MISIMMVDVD-SDERMTEMEGKFNLLIKAIKERDYKIAYLKNQLQNQEIAESTWNDKLGIGGLEWIVRN
        ++S+M+ +VD S+ RM E+E K N+L+K ++ERDY+IA+LKN +++++ AES  + KL    + W   N
Subjt:  MISIMMVDVD-SDERMTEMEGKFNLLIKAIKERDYKIAYLKNQLQNQEIAESTWNDKLGIGGLEWIVRN

A0A5D3BL51 Ty3-gypsy retrotransposon protein1.2e-0557.69Show/hide
Query:  ISIMMVDVD-SDERMTEMEGKFNLLIKAIKERDYKIAYLKNQLQNQEIAEST
        +SIM  DVD SD RMTE+E K N+L+KA++ERDY+IA LKN +++++ AES+
Subjt:  ISIMMVDVD-SDERMTEMEGKFNLLIKAIKERDYKIAYLKNQLQNQEIAEST

A0A5D3DQH9 Ty3-gypsy retrotransposon protein1.2e-0553.7Show/hide
Query:  MISIMMVDVD-SDERMTEMEGKFNLLIKAIKERDYKIAYLKNQLQNQEIAESTW
        +I +M+ DVD SD+RM E+E K N+LIKA+KERDY+IA LKN +++++  ES++
Subjt:  MISIMMVDVD-SDERMTEMEGKFNLLIKAIKERDYKIAYLKNQLQNQEIAESTW

A0A6J1DNV9 uncharacterized protein LOC1110224035.0e-0730.83Show/hide
Query:  AESTWNDKLGIGGLEWIVRNSEGSLVCFGMQKIYKNWPIKILEGKAVLEGLKVISDTCNRRSIPLEVETDTLEVVNALIGRSEDCS-------DLKTFTD
        A+++W+D    GG+ WI+R+ +G +V  G + +     +K+LE  A+LEGL+ +++    R  PL +ETD+ EV + L  + ED +       ++    D
Subjt:  AESTWNDKLGIGGLEWIVRNSEGSLVCFGMQKIYKNWPIKILEGKAVLEGLKVISDTCNRRSIPLEVETDTLEVVNALIGRSEDCS-------DLKTFTD

Query:  QINELASKSFGMEFRHCSKLLNTKAPCVARKAM
            LA    G E   C+  L  +A  V R++M
Subjt:  QINELASKSFGMEFRHCSKLLNTKAPCVARKAM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.2e-0428.07Show/hide
Query:  GLEWIVRNSEGSLVCFGMQKIYKNWPIKILEGKAVLEGLKVISDTCNRRSIPLEVETDTLEVVNALIGRSEDCSDLKTFTDQINELASKSFGMEFRHCSK
        GL WI+RNS+G+ +  G  K      IK  E  A++  ++   D   RR   +E E D +  VN LI   E    L+ + + I + +     ++F    +
Subjt:  GLEWIVRNSEGSLVCFGMQKIYKNWPIKILEGKAVLEGLKVISDTCNRRSIPLEVETDTLEVVNALIGRSEDCSDLKTFTDQINELASKSFGMEFRHCSK

Query:  LLNTKAPCVARKAM
          N     +A+KA+
Subjt:  LLNTKAPCVARKAM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATCCATCATGATGGTTGATGTAGACTCTGATGAGAGGATGACAGAAATGGAAGGAAAGTTCAACCTCCTGATAAAGGCAATTAAAGAAAGAGATTACAAAATCGC
TTACTTGAAGAACCAATTGCAAAATCAAGAGATTGCTGAATCAACGTGGAACGACAAGCTCGGCATTGGAGGGCTCGAATGGATTGTGCGTAACTCGGAAGGCTCCCTCG
TCTGTTTCGGGATGCAAAAGATTTACAAAAATTGGCCAATAAAAATTCTTGAAGGCAAAGCTGTGCTCGAGGGTCTGAAAGTGATAAGCGATACCTGTAATCGCCGATCA
ATCCCCCTCGAAGTTGAAACTGACACTCTTGAAGTCGTCAACGCCCTGATTGGAAGATCGGAGGATTGTTCGGATCTGAAGACCTTCACCGATCAGATCAATGAGCTTGC
TTCGAAGTCATTCGGCATGGAGTTTCGCCATTGCAGCAAACTTTTGAACACAAAGGCGCCCTGTGTTGCGAGGAAAGCCATGGATCTTGATTTTGTTTATGTTTTTCTCC
ATGGAAGGTTGGATTGGTGTAAGATCAAAAGACATGATTTCAATTTTGATCCTGAGATAAAGAAGACTTTTCGACAGCGCCATGAAAGGGATAGAGCCATTAGGGATTAT
GCGGCTGAAACTTTCTACAATCTCAATACCAGAATTGTTGAGCCAGTCATCGATGCAAAATCATTTCGAGCTCAAACCTATCATGTTCCAAATGCTTCAAACTATAGGCC
AATTTTCAGGACTTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATATCCATCATGATGGTTGATGTAGACTCTGATGAGAGGATGACAGAAATGGAAGGAAAGTTCAACCTCCTGATAAAGGCAATTAAAGAAAGAGATTACAAAATCGC
TTACTTGAAGAACCAATTGCAAAATCAAGAGATTGCTGAATCAACGTGGAACGACAAGCTCGGCATTGGAGGGCTCGAATGGATTGTGCGTAACTCGGAAGGCTCCCTCG
TCTGTTTCGGGATGCAAAAGATTTACAAAAATTGGCCAATAAAAATTCTTGAAGGCAAAGCTGTGCTCGAGGGTCTGAAAGTGATAAGCGATACCTGTAATCGCCGATCA
ATCCCCCTCGAAGTTGAAACTGACACTCTTGAAGTCGTCAACGCCCTGATTGGAAGATCGGAGGATTGTTCGGATCTGAAGACCTTCACCGATCAGATCAATGAGCTTGC
TTCGAAGTCATTCGGCATGGAGTTTCGCCATTGCAGCAAACTTTTGAACACAAAGGCGCCCTGTGTTGCGAGGAAAGCCATGGATCTTGATTTTGTTTATGTTTTTCTCC
ATGGAAGGTTGGATTGGTGTAAGATCAAAAGACATGATTTCAATTTTGATCCTGAGATAAAGAAGACTTTTCGACAGCGCCATGAAAGGGATAGAGCCATTAGGGATTAT
GCGGCTGAAACTTTCTACAATCTCAATACCAGAATTGTTGAGCCAGTCATCGATGCAAAATCATTTCGAGCTCAAACCTATCATGTTCCAAATGCTTCAAACTATAGGCC
AATTTTCAGGACTTCCTAA
Protein sequenceShow/hide protein sequence
MISIMMVDVDSDERMTEMEGKFNLLIKAIKERDYKIAYLKNQLQNQEIAESTWNDKLGIGGLEWIVRNSEGSLVCFGMQKIYKNWPIKILEGKAVLEGLKVISDTCNRRS
IPLEVETDTLEVVNALIGRSEDCSDLKTFTDQINELASKSFGMEFRHCSKLLNTKAPCVARKAMDLDFVYVFLHGRLDWCKIKRHDFNFDPEIKKTFRQRHERDRAIRDY
AAETFYNLNTRIVEPVIDAKSFRAQTYHVPNASNYRPIFRTS