; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000375 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000375
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr4:5372514..5373217
RNA-Seq ExpressionLag0000375
SyntenyLag0000375
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049700.1 T4.5 [Cucumis melo var. makuwa]1.8e-5455.98Show/hide
Query:  TSLDTSSA-KDLNSSMFLLTNICNLISICLDSSNYVMWKFQMMSILKVQKLFGFLDRSSVAPSQFVESSSSDAYSTSSASSSSTITIREINPLYEDWMAK
        T+L +SSA KD  S +FLL+NICNLIS+ LDS+N+V+WKFQ+ +ILK  KL+GF+D ++  P +           T+++SS+ST+   + NP YEDW+AK
Subjt:  TSLDTSSA-KDLNSSMFLLTNICNLISICLDSSNYVMWKFQMMSILKVQKLFGFLDRSSVAPSQFVESSSSDAYSTSSASSSSTITIREINPLYEDWMAK

Query:  DHALMTLINATLSPEALAYIV----------------------------DYLQAISKKPDESIDSYVKRIKEIKDRLANVSFMVNEEDLMIYALHGLPVE
        D ALMT+INATLSPEALAY+V                              LQ I KKPDESID+Y+KRIKEIKD+LANVS  +NEEDL+IYAL+GLP E
Subjt:  DHALMTLINATLSPEALAYIV----------------------------DYLQAISKKPDESIDSYVKRIKEIKDRLANVSFMVNEEDLMIYALHGLPVE

Query:  YNTFRTSMRTRSGTVTFDELHVLMKFEESTLEKQ
        YNTFRTSMRTRS  VTF+ELHVL++ EES L KQ
Subjt:  YNTFRTSMRTRSGTVTFDELHVLMKFEESTLEKQ

KAE8645659.1 hypothetical protein Csa_020439 [Cucumis sativus]1.8e-5456.41Show/hide
Query:  TSLDTSSA-KDLNSSMFLLTNICNLISICLDSSNYVMWKFQMMSILKVQKLFGFLDRSSVAPSQFVESSSSDAYSTSSASSSSTITIREINPLYEDWMAK
        T+L +SSA KD  S +FLL+NICNLIS+ LDS+N+V+WKFQ+ +ILK  KLFGF+D ++  P              +S S++ST+   + NPLYEDW+AK
Subjt:  TSLDTSSA-KDLNSSMFLLTNICNLISICLDSSNYVMWKFQMMSILKVQKLFGFLDRSSVAPSQFVESSSSDAYSTSSASSSSTITIREINPLYEDWMAK

Query:  DHALMTLINATLSPEALAYIV----------------------------DYLQAISKKPDESIDSYVKRIKEIKDRLANVSFMVNEEDLMIYALHGLPVE
        D ALMT+INATLSPEALAY+V                              LQ I KKPDESID+Y+KRIKEIKD+LANVS  +NEEDL+IYAL+GLP E
Subjt:  DHALMTLINATLSPEALAYIV----------------------------DYLQAISKKPDESIDSYVKRIKEIKDRLANVSFMVNEEDLMIYALHGLPVE

Query:  YNTFRTSMRTRSGTVTFDELHVLMKFEESTLEKQ
        YNTFRTSMRTRS  VTF+ELHVL++ EES L KQ
Subjt:  YNTFRTSMRTRSGTVTFDELHVLMKFEESTLEKQ

XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]1.8e-5455.98Show/hide
Query:  TSLDTSSA-KDLNSSMFLLTNICNLISICLDSSNYVMWKFQMMSILKVQKLFGFLDRSSVAPSQFVESSSSDAYSTSSASSSSTITIREINPLYEDWMAK
        T+L +SSA KD  S +FLL+NICNLIS+ LDS+N+V+WKFQ+ +ILK  KL+GF+D ++  P +           T+++SS+ST+   + NP YEDW+AK
Subjt:  TSLDTSSA-KDLNSSMFLLTNICNLISICLDSSNYVMWKFQMMSILKVQKLFGFLDRSSVAPSQFVESSSSDAYSTSSASSSSTITIREINPLYEDWMAK

Query:  DHALMTLINATLSPEALAYIV----------------------------DYLQAISKKPDESIDSYVKRIKEIKDRLANVSFMVNEEDLMIYALHGLPVE
        D ALMT+INATLSPEALAY+V                              LQ I KKPDESID+Y+KRIKEIKD+LANVS  +NEEDL+IYAL+GLP E
Subjt:  DHALMTLINATLSPEALAYIV----------------------------DYLQAISKKPDESIDSYVKRIKEIKDRLANVSFMVNEEDLMIYALHGLPVE

Query:  YNTFRTSMRTRSGTVTFDELHVLMKFEESTLEKQ
        YNTFRTSMRTRS  VTF+ELHVL++ EES L KQ
Subjt:  YNTFRTSMRTRSGTVTFDELHVLMKFEESTLEKQ

XP_008448008.1 PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]1.8e-5455.98Show/hide
Query:  TSLDTSSA-KDLNSSMFLLTNICNLISICLDSSNYVMWKFQMMSILKVQKLFGFLDRSSVAPSQFVESSSSDAYSTSSASSSSTITIREINPLYEDWMAK
        T+L +SSA KD  S +FLL+NICNLIS+ LDS+N+V+WKFQ+ +ILK  KL+GF+D ++  P +           T+++SS+ST+   + NP YEDW+AK
Subjt:  TSLDTSSA-KDLNSSMFLLTNICNLISICLDSSNYVMWKFQMMSILKVQKLFGFLDRSSVAPSQFVESSSSDAYSTSSASSSSTITIREINPLYEDWMAK

Query:  DHALMTLINATLSPEALAYIV----------------------------DYLQAISKKPDESIDSYVKRIKEIKDRLANVSFMVNEEDLMIYALHGLPVE
        D ALMT+INATLSPEALAY+V                              LQ I KKPDESID+Y+KRIKEIKD+LANVS  +NEEDL+IYAL+GLP E
Subjt:  DHALMTLINATLSPEALAYIV----------------------------DYLQAISKKPDESIDSYVKRIKEIKDRLANVSFMVNEEDLMIYALHGLPVE

Query:  YNTFRTSMRTRSGTVTFDELHVLMKFEESTLEKQ
        YNTFRTSMRTRS  VTF+ELHVL++ EES L KQ
Subjt:  YNTFRTSMRTRSGTVTFDELHVLMKFEESTLEKQ

XP_016900446.1 PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo]1.8e-5455.98Show/hide
Query:  TSLDTSSA-KDLNSSMFLLTNICNLISICLDSSNYVMWKFQMMSILKVQKLFGFLDRSSVAPSQFVESSSSDAYSTSSASSSSTITIREINPLYEDWMAK
        T+L +SSA KD  S +FLL+NICNLIS+ LDS+N+V+WKFQ+ +ILK  KL+GF+D ++  P +           T+++SS+ST+   + NP YEDW+AK
Subjt:  TSLDTSSA-KDLNSSMFLLTNICNLISICLDSSNYVMWKFQMMSILKVQKLFGFLDRSSVAPSQFVESSSSDAYSTSSASSSSTITIREINPLYEDWMAK

Query:  DHALMTLINATLSPEALAYIV----------------------------DYLQAISKKPDESIDSYVKRIKEIKDRLANVSFMVNEEDLMIYALHGLPVE
        D ALMT+INATLSPEALAY+V                              LQ I KKPDESID+Y+KRIKEIKD+LANVS  +NEEDL+IYAL+GLP E
Subjt:  DHALMTLINATLSPEALAYIV----------------------------DYLQAISKKPDESIDSYVKRIKEIKDRLANVSFMVNEEDLMIYALHGLPVE

Query:  YNTFRTSMRTRSGTVTFDELHVLMKFEESTLEKQ
        YNTFRTSMRTRS  VTF+ELHVL++ EES L KQ
Subjt:  YNTFRTSMRTRSGTVTFDELHVLMKFEESTLEKQ

TrEMBL top hitse value%identityAlignment
A0A1S3BI58 uncharacterized protein LOC103490319 isoform X28.7e-5555.98Show/hide
Query:  TSLDTSSA-KDLNSSMFLLTNICNLISICLDSSNYVMWKFQMMSILKVQKLFGFLDRSSVAPSQFVESSSSDAYSTSSASSSSTITIREINPLYEDWMAK
        T+L +SSA KD  S +FLL+NICNLIS+ LDS+N+V+WKFQ+ +ILK  KL+GF+D ++  P +           T+++SS+ST+   + NP YEDW+AK
Subjt:  TSLDTSSA-KDLNSSMFLLTNICNLISICLDSSNYVMWKFQMMSILKVQKLFGFLDRSSVAPSQFVESSSSDAYSTSSASSSSTITIREINPLYEDWMAK

Query:  DHALMTLINATLSPEALAYIV----------------------------DYLQAISKKPDESIDSYVKRIKEIKDRLANVSFMVNEEDLMIYALHGLPVE
        D ALMT+INATLSPEALAY+V                              LQ I KKPDESID+Y+KRIKEIKD+LANVS  +NEEDL+IYAL+GLP E
Subjt:  DHALMTLINATLSPEALAYIV----------------------------DYLQAISKKPDESIDSYVKRIKEIKDRLANVSFMVNEEDLMIYALHGLPVE

Query:  YNTFRTSMRTRSGTVTFDELHVLMKFEESTLEKQ
        YNTFRTSMRTRS  VTF+ELHVL++ EES L KQ
Subjt:  YNTFRTSMRTRSGTVTFDELHVLMKFEESTLEKQ

A0A1S3BIR3 uncharacterized protein LOC103490319 isoform X38.7e-5555.98Show/hide
Query:  TSLDTSSA-KDLNSSMFLLTNICNLISICLDSSNYVMWKFQMMSILKVQKLFGFLDRSSVAPSQFVESSSSDAYSTSSASSSSTITIREINPLYEDWMAK
        T+L +SSA KD  S +FLL+NICNLIS+ LDS+N+V+WKFQ+ +ILK  KL+GF+D ++  P +           T+++SS+ST+   + NP YEDW+AK
Subjt:  TSLDTSSA-KDLNSSMFLLTNICNLISICLDSSNYVMWKFQMMSILKVQKLFGFLDRSSVAPSQFVESSSSDAYSTSSASSSSTITIREINPLYEDWMAK

Query:  DHALMTLINATLSPEALAYIV----------------------------DYLQAISKKPDESIDSYVKRIKEIKDRLANVSFMVNEEDLMIYALHGLPVE
        D ALMT+INATLSPEALAY+V                              LQ I KKPDESID+Y+KRIKEIKD+LANVS  +NEEDL+IYAL+GLP E
Subjt:  DHALMTLINATLSPEALAYIV----------------------------DYLQAISKKPDESIDSYVKRIKEIKDRLANVSFMVNEEDLMIYALHGLPVE

Query:  YNTFRTSMRTRSGTVTFDELHVLMKFEESTLEKQ
        YNTFRTSMRTRS  VTF+ELHVL++ EES L KQ
Subjt:  YNTFRTSMRTRSGTVTFDELHVLMKFEESTLEKQ

A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X18.7e-5555.98Show/hide
Query:  TSLDTSSA-KDLNSSMFLLTNICNLISICLDSSNYVMWKFQMMSILKVQKLFGFLDRSSVAPSQFVESSSSDAYSTSSASSSSTITIREINPLYEDWMAK
        T+L +SSA KD  S +FLL+NICNLIS+ LDS+N+V+WKFQ+ +ILK  KL+GF+D ++  P +           T+++SS+ST+   + NP YEDW+AK
Subjt:  TSLDTSSA-KDLNSSMFLLTNICNLISICLDSSNYVMWKFQMMSILKVQKLFGFLDRSSVAPSQFVESSSSDAYSTSSASSSSTITIREINPLYEDWMAK

Query:  DHALMTLINATLSPEALAYIV----------------------------DYLQAISKKPDESIDSYVKRIKEIKDRLANVSFMVNEEDLMIYALHGLPVE
        D ALMT+INATLSPEALAY+V                              LQ I KKPDESID+Y+KRIKEIKD+LANVS  +NEEDL+IYAL+GLP E
Subjt:  DHALMTLINATLSPEALAYIV----------------------------DYLQAISKKPDESIDSYVKRIKEIKDRLANVSFMVNEEDLMIYALHGLPVE

Query:  YNTFRTSMRTRSGTVTFDELHVLMKFEESTLEKQ
        YNTFRTSMRTRS  VTF+ELHVL++ EES L KQ
Subjt:  YNTFRTSMRTRSGTVTFDELHVLMKFEESTLEKQ

A0A5D3CLI6 T4.58.7e-5555.98Show/hide
Query:  TSLDTSSA-KDLNSSMFLLTNICNLISICLDSSNYVMWKFQMMSILKVQKLFGFLDRSSVAPSQFVESSSSDAYSTSSASSSSTITIREINPLYEDWMAK
        T+L +SSA KD  S +FLL+NICNLIS+ LDS+N+V+WKFQ+ +ILK  KL+GF+D ++  P +           T+++SS+ST+   + NP YEDW+AK
Subjt:  TSLDTSSA-KDLNSSMFLLTNICNLISICLDSSNYVMWKFQMMSILKVQKLFGFLDRSSVAPSQFVESSSSDAYSTSSASSSSTITIREINPLYEDWMAK

Query:  DHALMTLINATLSPEALAYIV----------------------------DYLQAISKKPDESIDSYVKRIKEIKDRLANVSFMVNEEDLMIYALHGLPVE
        D ALMT+INATLSPEALAY+V                              LQ I KKPDESID+Y+KRIKEIKD+LANVS  +NEEDL+IYAL+GLP E
Subjt:  DHALMTLINATLSPEALAYIV----------------------------DYLQAISKKPDESIDSYVKRIKEIKDRLANVSFMVNEEDLMIYALHGLPVE

Query:  YNTFRTSMRTRSGTVTFDELHVLMKFEESTLEKQ
        YNTFRTSMRTRS  VTF+ELHVL++ EES L KQ
Subjt:  YNTFRTSMRTRSGTVTFDELHVLMKFEESTLEKQ

A0A6J1D9L6 uncharacterized protein LOC1110188924.3e-5453.85Show/hide
Query:  MTSLDTSSAKDLNSSMFLLTNICNLISICLDSSNYVMWKFQMMSILKVQKLFGFLDRSSVAPSQFVESSSSDAYSTSSASSSSTITIREINPLYEDWMAK
        MTS  T++ KDL+S +FLL+NICNL+SI LDS+++++WKFQ+ +ILK  KLFGF+D S  APSQF+ SSS      + +  ++T ++  INP +EDW+AK
Subjt:  MTSLDTSSAKDLNSSMFLLTNICNLISICLDSSNYVMWKFQMMSILKVQKLFGFLDRSSVAPSQFVESSSSDAYSTSSASSSSTITIREINPLYEDWMAK

Query:  DHALMTLINATLSPEALAYIV----------------------------DYLQAISKKPDESIDSYVKRIKEIKDRLANVSFMVNEEDLMIYALHGLPVE
        D ALMTLINATLS EALAY+V                              LQ+I KK +ESID+YVKRIKEIKD+ ANVS  +N+E L+IYAL+GL  E
Subjt:  DHALMTLINATLSPEALAYIV----------------------------DYLQAISKKPDESIDSYVKRIKEIKDRLANVSFMVNEEDLMIYALHGLPVE

Query:  YNTFRTSMRTRSGTVTFDELHVLMKFEESTLEKQ
        YNT  TSMRTR+ +V+F+ELHV MK EES +EKQ
Subjt:  YNTFRTSMRTRSGTVTFDELHVLMKFEESTLEKQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCTCTCTTGATACGTCTTCTGCCAAAGATCTAAATTCGTCGATGTTTCTACTGACAAACATCTGTAATTTGATCTCCATCTGTCTTGATTCTTCAAATTATGTGAT
GTGGAAATTTCAGATGATGTCCATCCTCAAAGTGCAGAAGCTTTTTGGATTTCTTGATAGATCCTCTGTTGCTCCATCTCAGTTCGTTGAATCAAGTTCTTCTGATGCTT
ATAGTACTTCTTCTGCATCTTCTTCTTCCACAATTACAATTCGTGAGATCAATCCTCTATATGAAGACTGGATGGCTAAGGATCATGCCTTGATGACCCTCATCAATGCG
ACTCTCTCACCTGAAGCACTGGCTTACATTGTCGATTATCTACAAGCTATTTCAAAGAAACCAGATGAATCAATTGACTCTTATGTCAAACGGATCAAAGAAATCAAGGA
TAGATTGGCCAATGTCTCATTTATGGTTAATGAAGAGGATCTCATGATTTATGCCTTACATGGACTGCCAGTTGAATACAACACTTTTCGGACCTCTATGCGCACTCGTT
CTGGTACAGTCACTTTTGATGAACTTCATGTTCTCATGAAGTTTGAAGAGTCGACTCTCGAGAAGCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACCTCTCTTGATACGTCTTCTGCCAAAGATCTAAATTCGTCGATGTTTCTACTGACAAACATCTGTAATTTGATCTCCATCTGTCTTGATTCTTCAAATTATGTGAT
GTGGAAATTTCAGATGATGTCCATCCTCAAAGTGCAGAAGCTTTTTGGATTTCTTGATAGATCCTCTGTTGCTCCATCTCAGTTCGTTGAATCAAGTTCTTCTGATGCTT
ATAGTACTTCTTCTGCATCTTCTTCTTCCACAATTACAATTCGTGAGATCAATCCTCTATATGAAGACTGGATGGCTAAGGATCATGCCTTGATGACCCTCATCAATGCG
ACTCTCTCACCTGAAGCACTGGCTTACATTGTCGATTATCTACAAGCTATTTCAAAGAAACCAGATGAATCAATTGACTCTTATGTCAAACGGATCAAAGAAATCAAGGA
TAGATTGGCCAATGTCTCATTTATGGTTAATGAAGAGGATCTCATGATTTATGCCTTACATGGACTGCCAGTTGAATACAACACTTTTCGGACCTCTATGCGCACTCGTT
CTGGTACAGTCACTTTTGATGAACTTCATGTTCTCATGAAGTTTGAAGAGTCGACTCTCGAGAAGCAATAA
Protein sequenceShow/hide protein sequence
MTSLDTSSAKDLNSSMFLLTNICNLISICLDSSNYVMWKFQMMSILKVQKLFGFLDRSSVAPSQFVESSSSDAYSTSSASSSSTITIREINPLYEDWMAKDHALMTLINA
TLSPEALAYIVDYLQAISKKPDESIDSYVKRIKEIKDRLANVSFMVNEEDLMIYALHGLPVEYNTFRTSMRTRSGTVTFDELHVLMKFEESTLEKQ