; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000377 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000377
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionUnknown protein
Genome locationchr4:5390154..5392623
RNA-Seq ExpressionLag0000377
SyntenyLag0000377
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR017956 - AT hook, DNA-binding motif


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ORX76897.1 hypothetical protein BCR32DRAFT_270985 [Anaeromyces robustus]4.3e-0429.18Show/hide
Query:  RGAYTLLGKAWGGLGNSRASLQAVTVILGVRTLFWGKAWGGPGNSRASLQAFTVIPGVRTLFWGKAWGGLGNSRASLQAVTVIPGVHTLFWGKAWGGLGN
        RG +  LG  W GLG+   SL +V   LG      G  W G G+   SL +     G      G  W  LG+   SL +V    G      G  W GLG+
Subjt:  RGAYTLLGKAWGGLGNSRASLQAVTVILGVRTLFWGKAWGGPGNSRASLQAFTVIPGVRTLFWGKAWGGLGNSRASLQAVTVIPGVHTLFWGKAWGGLGN

Query:  SRASLQAV-TVIPGCHP--RGAYTLLGKSL-GRPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFPRLSSSYHGHPRGAYTLLGKAWGGLGNSRASLQAV
            L+ V   + G     RG +  LG    G    +  L S  +G       L     G    +  L S ++G  +G +  LG  W GLG+    L +V
Subjt:  SRASLQAV-TVIPGCHP--RGAYTLLGKSL-GRPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFPRLSSSYHGHPRGAYTLLGKAWGGLGNSRASLQAV

Query:  -TVIRGVRTLFWGKAWGGPRNSRASLQAVTVILGVRTLFWGKAWGGPGNSRASLQAV
           +RGV     G  W G R     L+ V   LG      G  W   G+   SL+ V
Subjt:  -TVIRGVRTLFWGKAWGGPRNSRASLQAVTVILGVRTLFWGKAWGGPGNSRASLQAV
TrEMBL top hitse value%identityAlignment
A0A1Y1WTN7 Uncharacterized protein2.1e-0429.18Show/hide
Query:  RGAYTLLGKAWGGLGNSRASLQAVTVILGVRTLFWGKAWGGPGNSRASLQAFTVIPGVRTLFWGKAWGGLGNSRASLQAVTVIPGVHTLFWGKAWGGLGN
        RG +  LG  W GLG+   SL +V   LG      G  W G G+   SL +     G      G  W  LG+   SL +V    G      G  W GLG+
Subjt:  RGAYTLLGKAWGGLGNSRASLQAVTVILGVRTLFWGKAWGGPGNSRASLQAFTVIPGVRTLFWGKAWGGLGNSRASLQAVTVIPGVHTLFWGKAWGGLGN

Query:  SRASLQAV-TVIPGCHP--RGAYTLLGKSL-GRPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFPRLSSSYHGHPRGAYTLLGKAWGGLGNSRASLQAV
            L+ V   + G     RG +  LG    G    +  L S  +G       L     G    +  L S ++G  +G +  LG  W GLG+    L +V
Subjt:  SRASLQAV-TVIPGCHP--RGAYTLLGKSL-GRPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFPRLSSSYHGHPRGAYTLLGKAWGGLGNSRASLQAV

Query:  -TVIRGVRTLFWGKAWGGPRNSRASLQAVTVILGVRTLFWGKAWGGPGNSRASLQAV
           +RGV     G  W G R     L+ V   LG      G  W   G+   SL+ V
Subjt:  -TVIRGVRTLFWGKAWGGPRNSRASLQAVTVILGVRTLFWGKAWGGPGNSRASLQAV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCAGATTTTCCCGACCCTACCTTAAGCATCTCCCTGCGACTTTGAGCGCCTCGACTGTGCCAAAAAGTAAAGTGACTGAGAACTCAAACAATCATGCTGCTTTGAA
TGTGTGCCTGATGGTTGGCCTTGGAGTTGGGATGTTTGGCCTTCGCATGACCGTGTGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCCAGGAAGTTCCCGAGCCTCT
CTTCAAGCTGTCAGGGTCATCGCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCAGGGTCATCCCAGG
GGTGCGTATACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTTCCGAGCCTCTCTTCAAGCTGTCAGGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAG
CTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCAGGGTCATCCTAGGGGTGCATACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGA
GCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGAGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTATCACGGTCAT
CCCAGGGGTGCGTACACTCTTCTGGGGAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCTAGGGGTGCGTACACTCTTCTGGGG
AAAAGCTTGGGGAGGCCCAGGAAATTCCCGAGCCTCTCTTCAAGCTTTCACGGTCATCCCAGGGGTGCGTACACTCTTTTGGGGAAAAGCTTGGGGAGGCCTAGGAAATT
CCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGTGCATACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCACG
GTCATCCCAGGGTGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTAGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGG
TGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGGCTCTCTTCAAGCTATCACGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGCTT
GGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCGAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCCAAGAAATTCCCGAGCC
TCTCTTCAAGCTGTCACGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCCAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCC
AGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCCAGGAAATTCCCGAGCCTCTCTTCAAGCTGCTGTATTCATCCCGAGGGTGCGTACACTCAGTCGGGGGA
AGTGTGGAAGTCTAGCCTCTACAAGGATCATTCTCGTCTGGCCACACGCGTTACATCCTATGGAAAAAGCACTTTATGCGAAACACAATGCAAAGAACTTCATTAAATTC
GCAAGTGTCGACATCGTACCACGAAGAAGCGCCATGGACATGCCTCTAAGGGTGGAGCTCGGCCTTGGCCTCTGGATGGTCGGCCTCGGCCTTGGCATGAGGCCGACCAG
CTCCTCTATGCTGTTCGTTTGCTTGTTTTCCATCCCAAGGGTGCATGCACTTAGTCGGAGAAAACTCGGGGAGGTCGAGGAAATTTCCGAGCCTCTCTTCAAGCTGTTGT
ATTCATCACAGGAGTGGTGGCGTTGCCTGCCACTTGTTTCTGCTATGGCTACTGATAGTAAATCTTCAAGTGTTCTGCATTCCATGGGTGTGGAGTTGGTTTCCCGTTTT
CGTCAACCAAGGCATAGGTGCCGGGGCGGACCACTTTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGCAGATTTTCCCGACCCTACCTTAAGCATCTCCCTGCGACTTTGAGCGCCTCGACTGTGCCAAAAAGTAAAGTGACTGAGAACTCAAACAATCATGCTGCTTTGAA
TGTGTGCCTGATGGTTGGCCTTGGAGTTGGGATGTTTGGCCTTCGCATGACCGTGTGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCCAGGAAGTTCCCGAGCCTCT
CTTCAAGCTGTCAGGGTCATCGCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCAGGGTCATCCCAGG
GGTGCGTATACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTTCCGAGCCTCTCTTCAAGCTGTCAGGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAG
CTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCAGGGTCATCCTAGGGGTGCATACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGA
GCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGAGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTATCACGGTCAT
CCCAGGGGTGCGTACACTCTTCTGGGGAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCTAGGGGTGCGTACACTCTTCTGGGG
AAAAGCTTGGGGAGGCCCAGGAAATTCCCGAGCCTCTCTTCAAGCTTTCACGGTCATCCCAGGGGTGCGTACACTCTTTTGGGGAAAAGCTTGGGGAGGCCTAGGAAATT
CCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGTGCATACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCACG
GTCATCCCAGGGTGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTAGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGG
TGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGGCTCTCTTCAAGCTATCACGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGCTT
GGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCGAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCCAAGAAATTCCCGAGCC
TCTCTTCAAGCTGTCACGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCCAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCC
AGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCCAGGAAATTCCCGAGCCTCTCTTCAAGCTGCTGTATTCATCCCGAGGGTGCGTACACTCAGTCGGGGGA
AGTGTGGAAGTCTAGCCTCTACAAGGATCATTCTCGTCTGGCCACACGCGTTACATCCTATGGAAAAAGCACTTTATGCGAAACACAATGCAAAGAACTTCATTAAATTC
GCAAGTGTCGACATCGTACCACGAAGAAGCGCCATGGACATGCCTCTAAGGGTGGAGCTCGGCCTTGGCCTCTGGATGGTCGGCCTCGGCCTTGGCATGAGGCCGACCAG
CTCCTCTATGCTGTTCGTTTGCTTGTTTTCCATCCCAAGGGTGCATGCACTTAGTCGGAGAAAACTCGGGGAGGTCGAGGAAATTTCCGAGCCTCTCTTCAAGCTGTTGT
ATTCATCACAGGAGTGGTGGCGTTGCCTGCCACTTGTTTCTGCTATGGCTACTGATAGTAAATCTTCAAGTGTTCTGCATTCCATGGGTGTGGAGTTGGTTTCCCGTTTT
CGTCAACCAAGGCATAGGTGCCGGGGCGGACCACTTTGCTAA
Protein sequenceShow/hide protein sequence
MCRFSRPYLKHLPATLSASTVPKSKVTENSNNHAALNVCLMVGLGVGMFGLRMTVCTLFWGKGLGRPRKFPSLSSSCQGHRRGAYTLLGKSLGRPRKFPSLSSSCQGHPR
GAYTLLGKSLGRPRKFPSLSSSCQGHPRGAYTLLGKSLGRPRKFPSLSSSCQGHPRGAYTLLGKSLGRPRKFPSLSSSCHGHPRGAYTLLGKSLERPRKFPSLSSSYHGH
PRGAYTLLGKAWGGLGNSRASLQAVTVILGVRTLFWGKAWGGPGNSRASLQAFTVIPGVRTLFWGKAWGGLGNSRASLQAVTVIPGVHTLFWGKAWGGLGNSRASLQAVT
VIPGCHPRGAYTLLGKSLGRPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFPRLSSSYHGHPRGAYTLLGKAWGGLGNSRASLQAVTVIRGVRTLFWGKAWGGPRNSRA
SLQAVTVILGVRTLFWGKAWGGPGNSRASLQAVTVIPGVRTLFWGKAWGGPGNSRASLQAAVFIPRVRTLSRGKCGSLASTRIILVWPHALHPMEKALYAKHNAKNFIKF
ASVDIVPRRSAMDMPLRVELGLGLWMVGLGLGMRPTSSSMLFVCLFSIPRVHALSRRKLGEVEEISEPLFKLLYSSQEWWRCLPLVSAMATDSKSSSVLHSMGVELVSRF
RQPRHRCRGGPLC