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Lag0000401 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000401
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNA-directed DNA polymerase (reverse transcriptase)-related family protein
Genome locationchr4:6111946..6112395
RNA-Seq ExpressionLag0000401
SyntenyLag0000401
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022145148.1 uncharacterized protein LOC111014662 [Momordica charantia]4.8e-3346.98Show/hide
Query:  MTGKNVSIDEARKIGQILEVKRKDTIGDYLGMASKNERSKTGLFKKLNDKIGKALMLWKKSFFSARGNEILIKAIIQAIPTYTMSCFRLPKLFCEEINRR
        M  +N S   A  I   L V R + +G YLG+ S+  R+K  +F  + +++ + L  WK+  FS+ G E+LIKA+ QAIP Y+MSCFR P   C+EIN  
Subjt:  MTGKNVSIDEARKIGQILEVKRKDTIGDYLGMASKNERSKTGLFKKLNDKIGKALMLWKKSFFSARGNEILIKAIIQAIPTYTMSCFRLPKLFCEEINRR

Query:  CARFWWGSTNGGRKIHWRRWKALCKSNDLGDMGFREISLFNQVMLAKQS
         ARFWWGS +  +KIHW  WK LC S + G +GF+++ +FNQ MLAKQS
Subjt:  CARFWWGSTNGGRKIHWRRWKALCKSNDLGDMGFREISLFNQVMLAKQS

XP_030483427.1 uncharacterized protein LOC115700018 [Cannabis sativa]2.6e-3151.24Show/hide
Query:  YLGMASKNERSKTGLFKKLNDKIGKALMLWKKSFFSARGNEILIKAIIQAIPTYTMSCFRLPKLFCEEINRRCARFWWGSTNGGRKIHWRRWKALCKSND
        YLG+ S + R K  +F  + +KI + +  W + FFSA G E+L+KA++Q+IPTY MSCFRLP  FC ++    A FWWG    G K+HWR WK LCK  D
Subjt:  YLGMASKNERSKTGLFKKLNDKIGKALMLWKKSFFSARGNEILIKAIIQAIPTYTMSCFRLPKLFCEEINRRCARFWWGSTNGGRKIHWRRWKALCKSND

Query:  LGDMGFREISLFNQVMLAKQS
         G MGFR    FNQ MLAKQ+
Subjt:  LGDMGFREISLFNQVMLAKQS

XP_030483669.1 uncharacterized protein LOC115700241 [Cannabis sativa]2.0e-3152.46Show/hide
Query:  DYLGMASKNERSKTGLFKKLNDKIGKALMLWKKSFFSARGNEILIKAIIQAIPTYTMSCFRLPKLFCEEINRRCARFWWGSTNGGRKIHWRRWKALCKSN
        +YLG+ S   R KT LF  + DKI K L  WK+  FS  G E+L+KA++QAIPTY MSCFRLP   C +I    + FWWGST+ G  IHW+ W +LCK+ 
Subjt:  DYLGMASKNERSKTGLFKKLNDKIGKALMLWKKSFFSARGNEILIKAIIQAIPTYTMSCFRLPKLFCEEINRRCARFWWGSTNGGRKIHWRRWKALCKSN

Query:  DLGDMGFREISLFNQVMLAKQS
          G +GFR   LFNQ +LAKQ+
Subjt:  DLGDMGFREISLFNQVMLAKQS

XP_030483769.1 uncharacterized protein LOC115700339 [Cannabis sativa]4.5e-3152.07Show/hide
Query:  YLGMASKNERSKTGLFKKLNDKIGKALMLWKKSFFSARGNEILIKAIIQAIPTYTMSCFRLPKLFCEEINRRCARFWWGSTNGGRKIHWRRWKALCKSND
        YLG+ + +ER K+ LF  + +KI K +  W    FS  G E+L+KA++Q+IPTY MSCFRL K FC E+    ARFWWGS    +KIHW++WK LCKS  
Subjt:  YLGMASKNERSKTGLFKKLNDKIGKALMLWKKSFFSARGNEILIKAIIQAIPTYTMSCFRLPKLFCEEINRRCARFWWGSTNGGRKIHWRRWKALCKSND

Query:  LGDMGFREISLFNQVMLAKQS
         G MGFR    FNQ +LAKQ+
Subjt:  LGDMGFREISLFNQVMLAKQS

XP_030498122.1 uncharacterized protein LOC115713779 [Cannabis sativa]1.5e-3150Show/hide
Query:  QILEVKRKDTIGDYLGMASKNERSKTGLFKKLNDKIGKALMLWKKSFFSARGNEILIKAIIQAIPTYTMSCFRLPKLFCEEINRRCARFWWGSTNGGRKI
        Q+L +  +    +YLG+ S + R KT LF  + DKI K L  WK+  FSA G E+L+KA++QAIPTY MSCFRLP   C +I    A FWWGST  G  I
Subjt:  QILEVKRKDTIGDYLGMASKNERSKTGLFKKLNDKIGKALMLWKKSFFSARGNEILIKAIIQAIPTYTMSCFRLPKLFCEEINRRCARFWWGSTNGGRKI

Query:  HWRRWKALCKSNDLGDMGFREISLFNQVMLAKQS
        HW+ W +LCK+   G +GFR    FNQ +LAKQ+
Subjt:  HWRRWKALCKSNDLGDMGFREISLFNQVMLAKQS

TrEMBL top hitse value%identityAlignment
A0A6J1CV63 uncharacterized protein LOC1110146622.3e-3346.98Show/hide
Query:  MTGKNVSIDEARKIGQILEVKRKDTIGDYLGMASKNERSKTGLFKKLNDKIGKALMLWKKSFFSARGNEILIKAIIQAIPTYTMSCFRLPKLFCEEINRR
        M  +N S   A  I   L V R + +G YLG+ S+  R+K  +F  + +++ + L  WK+  FS+ G E+LIKA+ QAIP Y+MSCFR P   C+EIN  
Subjt:  MTGKNVSIDEARKIGQILEVKRKDTIGDYLGMASKNERSKTGLFKKLNDKIGKALMLWKKSFFSARGNEILIKAIIQAIPTYTMSCFRLPKLFCEEINRR

Query:  CARFWWGSTNGGRKIHWRRWKALCKSNDLGDMGFREISLFNQVMLAKQS
         ARFWWGS +  +KIHW  WK LC S + G +GF+++ +FNQ MLAKQS
Subjt:  CARFWWGSTNGGRKIHWRRWKALCKSNDLGDMGFREISLFNQVMLAKQS

A0A803PM68 Uncharacterized protein5.2e-3350.68Show/hide
Query:  GKNVSIDEARKIGQILEVKRKDTIGDYLGMASKNERSKTGLFKKLNDKIGKALMLWKKSFFSARGNEILIKAIIQAIPTYTMSCFRLPKLFCEEINRRCA
        G+ VS     ++  ++ VK  D  G YLG+ S   R+K   F+ +  K+   L  WK SFFSA G EILIKAI+QAIPTYTMSCFRLPK     I+   A
Subjt:  GKNVSIDEARKIGQILEVKRKDTIGDYLGMASKNERSKTGLFKKLNDKIGKALMLWKKSFFSARGNEILIKAIIQAIPTYTMSCFRLPKLFCEEINRRCA

Query:  RFWWGSTNGGRKIHWRRWKALCKSNDLGDMGFREISLFNQVMLAKQ
        RFWWGS+    KIHW +W  LCK  + G +GFR++ LFNQ +LAKQ
Subjt:  RFWWGSTNGGRKIHWRRWKALCKSNDLGDMGFREISLFNQVMLAKQ

A0A803PV25 Uncharacterized protein2.6e-3250.68Show/hide
Query:  GKNVSIDEARKIGQILEVKRKDTIGDYLGMASKNERSKTGLFKKLNDKIGKALMLWKKSFFSARGNEILIKAIIQAIPTYTMSCFRLPKLFCEEINRRCA
        G++VS      +   + VK  D  G YLG+ S   R+K   F+ +N K+   L  WK SFFSA G E+LIKAI+QAIPTYTMSCFRLPK     I+   A
Subjt:  GKNVSIDEARKIGQILEVKRKDTIGDYLGMASKNERSKTGLFKKLNDKIGKALMLWKKSFFSARGNEILIKAIIQAIPTYTMSCFRLPKLFCEEINRRCA

Query:  RFWWGSTNGGRKIHWRRWKALCKSNDLGDMGFREISLFNQVMLAKQ
        RFWWGS+    KIHW +W  LCK  + G +GFR++ LFNQ +LAKQ
Subjt:  RFWWGSTNGGRKIHWRRWKALCKSNDLGDMGFREISLFNQVMLAKQ

A0A803PWX1 Uncharacterized protein1.8e-3350Show/hide
Query:  GKNVSIDEARKIGQILEVKRKDTIGDYLGMASKNERSKTGLFKKLNDKIGKALMLWKKSFFSARGNEILIKAIIQAIPTYTMSCFRLPKLFCEEINRRCA
        G+ V++     +  I+ VK  D  G YLG+ S   R+K   F+ + +K+   L  WK SFFSA G E+LIKA+IQAIPTYTMSCFRLPK     I+   A
Subjt:  GKNVSIDEARKIGQILEVKRKDTIGDYLGMASKNERSKTGLFKKLNDKIGKALMLWKKSFFSARGNEILIKAIIQAIPTYTMSCFRLPKLFCEEINRRCA

Query:  RFWWGSTNGGRKIHWRRWKALCKSNDLGDMGFREISLFNQVMLAKQ
        RFWWGS+    KIHW +W  LCK  + G +GFR++ LFNQ +LAKQ
Subjt:  RFWWGSTNGGRKIHWRRWKALCKSNDLGDMGFREISLFNQVMLAKQ

A0A803QCV6 Uncharacterized protein2.0e-3247.95Show/hide
Query:  GKNVSIDEARKIGQILEVKRKDTIGDYLGMASKNERSKTGLFKKLNDKIGKALMLWKKSFFSARGNEILIKAIIQAIPTYTMSCFRLPKLFCEEINRRCA
        GK ++ +    +  +LEVK  +    YLGM +   + K  +F+++   I   L  WK S FS  G E+L+KAIIQAIPTY MSCFRLPK   ++I+   A
Subjt:  GKNVSIDEARKIGQILEVKRKDTIGDYLGMASKNERSKTGLFKKLNDKIGKALMLWKKSFFSARGNEILIKAIIQAIPTYTMSCFRLPKLFCEEINRRCA

Query:  RFWWGSTNGGRKIHWRRWKALCKSNDLGDMGFREISLFNQVMLAKQ
        RFWWGS++  RKIHW +WK LCK  D G MGF+++  FNQ +LAKQ
Subjt:  RFWWGSTNGGRKIHWRRWKALCKSNDLGDMGFREISLFNQVMLAKQ

SwissProt top hitse value%identityAlignment
P93295 Uncharacterized mitochondrial protein AtMg003101.5e-1652.05Show/hide
Query:  AIPTYTMSCFRLPKLFCEEINRRCARFWWGSTNGGRKIHWRRWKALCKS-NDLGDMGFREISLFNQVMLAKQS
        A+P Y MSCFRL KL C+++      FWW S    RKI W  W+ LCKS  D G +GFR++  FNQ +LAKQS
Subjt:  AIPTYTMSCFRLPKLFCEEINRRCARFWWGSTNGGRKIHWRRWKALCKS-NDLGDMGFREISLFNQVMLAKQS

Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein5.9e-1342.25Show/hide
Query:  AIPTYTMSCFRLPKLFCEEINRRCARFWWGSTNGGRKIHWRRWKALCKSNDLGDMGFREISLFNQVMLAKQ
        A+PTYTM+CF LPK  C++I    A FWW +    + +HW+ W  L      G +GF++I  FN  +L KQ
Subjt:  AIPTYTMSCFRLPKLFCEEINRRCARFWWGSTNGGRKIHWRRWKALCKSNDLGDMGFREISLFNQVMLAKQ

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.0e-1752.05Show/hide
Query:  AIPTYTMSCFRLPKLFCEEINRRCARFWWGSTNGGRKIHWRRWKALCKS-NDLGDMGFREISLFNQVMLAKQS
        A+P Y MSCFRL KL C+++      FWW S    RKI W  W+ LCKS  D G +GFR++  FNQ +LAKQS
Subjt:  AIPTYTMSCFRLPKLFCEEINRRCARFWWGSTNGGRKIHWRRWKALCKS-NDLGDMGFREISLFNQVMLAKQS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGGCAAAAATGTTTCTATAGATGAGGCTAGGAAAATTGGCCAGATTCTAGAGGTCAAGAGAAAAGACACCATTGGAGACTACCTTGGCATGGCTTCTAAAAATGA
GAGAAGCAAGACAGGCCTGTTCAAAAAGCTCAATGATAAAATAGGGAAAGCTTTGATGTTGTGGAAAAAGAGCTTTTTCTCGGCGAGAGGAAACGAGATTCTCATCAAGG
CCATTATCCAAGCTATCCCTACGTACACGATGTCTTGCTTCCGCCTCCCTAAATTATTTTGTGAGGAGATTAATAGACGGTGTGCTCGTTTCTGGTGGGGCTCGACTAAT
GGAGGGAGGAAGATTCATTGGAGAAGATGGAAGGCTTTATGCAAAAGCAATGACCTAGGCGACATGGGATTTAGGGAGATCAGTCTCTTTAACCAAGTCATGCTCGCCAA
GCAGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCGGCAAAAATGTTTCTATAGATGAGGCTAGGAAAATTGGCCAGATTCTAGAGGTCAAGAGAAAAGACACCATTGGAGACTACCTTGGCATGGCTTCTAAAAATGA
GAGAAGCAAGACAGGCCTGTTCAAAAAGCTCAATGATAAAATAGGGAAAGCTTTGATGTTGTGGAAAAAGAGCTTTTTCTCGGCGAGAGGAAACGAGATTCTCATCAAGG
CCATTATCCAAGCTATCCCTACGTACACGATGTCTTGCTTCCGCCTCCCTAAATTATTTTGTGAGGAGATTAATAGACGGTGTGCTCGTTTCTGGTGGGGCTCGACTAAT
GGAGGGAGGAAGATTCATTGGAGAAGATGGAAGGCTTTATGCAAAAGCAATGACCTAGGCGACATGGGATTTAGGGAGATCAGTCTCTTTAACCAAGTCATGCTCGCCAA
GCAGAGTTGA
Protein sequenceShow/hide protein sequence
MTGKNVSIDEARKIGQILEVKRKDTIGDYLGMASKNERSKTGLFKKLNDKIGKALMLWKKSFFSARGNEILIKAIIQAIPTYTMSCFRLPKLFCEEINRRCARFWWGSTN
GGRKIHWRRWKALCKSNDLGDMGFREISLFNQVMLAKQS