; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000409 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000409
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr4:6334911..6335462
RNA-Seq ExpressionLag0000409
SyntenyLag0000409
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFS31826.1 hypothetical protein Acr_00g0019390 [Actinidia rufa]6.8e-0547.17Show/hide
Query:  GDLPKLKDSGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFRPYDGKKDPV
        G +  +K+ G   +EELI++ D PFT  VM+  +P KFK+PT  P+DG KDP+
Subjt:  GDLPKLKDSGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFRPYDGKKDPV

XP_022145129.1 uncharacterized protein LOC111014646 [Momordica charantia]1.2e-0432.95Show/hide
Query:  LSRILQILDKPDPSTKLHEGDLIRDPRKGKNPVEYVNESKTESKGKKTNSATSKVRGLKHTERTVLRSPESSTSRRTDLRNLIEEKCRVAKTAESEARAA
        L R+ Q+L + +   +  E  L+RDPRKGK P     +S+TE   + TNSA SK+R               +T RRT + +         K  +    +A
Subjt:  LSRILQILDKPDPSTKLHEGDLIRDPRKGKNPVEYVNESKTESKGKKTNSATSKVRGLKHTERTVLRSPESSTSRRTDLRNLIEEKCRVAKTAESEARAA

Query:  EAEAKKDHFPWKTELLNTLKELGNPQGDLPKLKD------SGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFR
            + DH    +E ++  K  G P  D P+  +        G D+EEL+DQ D PFTEE+M+ ++P KFK+PT +
Subjt:  EAEAKKDHFPWKTELLNTLKELGNPQGDLPKLKD------SGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFR

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]7.3e-0735.12Show/hide
Query:  EGDLIRDPRKGKNPVEYVNESKTESKGKKTNSATSKVR-GLKHTERTVLRSPESSTSRRTDLRNLIEEKCRVAKTAESEARAAEAEAKKDHFPWKTELLN
        E  L+RDP+KGK P     ES TE   + TNS  SK+R G    +RT +  P                     KT +     A    K DH    +E ++
Subjt:  EGDLIRDPRKGKNPVEYVNESKTESKGKKTNSATSKVR-GLKHTERTVLRSPESSTSRRTDLRNLIEEKCRVAKTAESEARAAEAEAKKDHFPWKTELLN

Query:  TLKELGNPQGDLPKLKD------SGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFRPYDGKKDPV
          K  G P  D P+  +        G D+EEL+DQ D PFTEE+M+ ++P KFK+PT + +D   DPV
Subjt:  TLKELGNPQGDLPKLKD------SGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFRPYDGKKDPV

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]5.2e-0540.51Show/hide
Query:  AKKDHFPWKTE--LLNTLKELGNPQGDLPK-LKDSGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFRPYDGKKDPV
        +K DH    +E   LN  K +  P+    +  +   G D+EEL+ Q D PFTEE+M+ ++P KFK+PT +P+DG  +PV
Subjt:  AKKDHFPWKTE--LLNTLKELGNPQGDLPK-LKDSGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFRPYDGKKDPV

XP_030939261.1 uncharacterized protein LOC115964085 [Quercus lobata]2.6e-0429.6Show/hide
Query:  RTVLRSPESSTSRRTDLRNLIE-EKCRVAKTAE--------SEARAAEAEAKKDHFPWKTELLNTLKELGNPQGDLPKLKDSGGQDIEELIDQVDPPFTE
        + +L + E  T +  +LR  +E +  ++ +T E        S+A   +   ++D    + EL N  KE+   +     +KD GG++++ +I ++D PFT 
Subjt:  RTVLRSPESSTSRRTDLRNLIE-EKCRVAKTAE--------SEARAAEAEAKKDHFPWKTELLNTLKELGNPQGDLPKLKDSGGQDIEELIDQVDPPFTE

Query:  EVMKAEMPQKFKVPTFRPYDGKKDP
        EV+   +P KF +P    YDG KDP
Subjt:  EVMKAEMPQKFKVPTFRPYDGKKDP

TrEMBL top hitse value%identityAlignment
A0A6J1CUA7 uncharacterized protein LOC1110146465.6e-0532.95Show/hide
Query:  LSRILQILDKPDPSTKLHEGDLIRDPRKGKNPVEYVNESKTESKGKKTNSATSKVRGLKHTERTVLRSPESSTSRRTDLRNLIEEKCRVAKTAESEARAA
        L R+ Q+L + +   +  E  L+RDPRKGK P     +S+TE   + TNSA SK+R               +T RRT + +         K  +    +A
Subjt:  LSRILQILDKPDPSTKLHEGDLIRDPRKGKNPVEYVNESKTESKGKKTNSATSKVRGLKHTERTVLRSPESSTSRRTDLRNLIEEKCRVAKTAESEARAA

Query:  EAEAKKDHFPWKTELLNTLKELGNPQGDLPKLKD------SGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFR
            + DH    +E ++  K  G P  D P+  +        G D+EEL+DQ D PFTEE+M+ ++P KFK+PT +
Subjt:  EAEAKKDHFPWKTELLNTLKELGNPQGDLPKLKD------SGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFR

A0A6J1DSV3 protein SPIRRIG2.1e-0429.63Show/hide
Query:  TKLHEGDLIRDPRKGKNPVEYVNESKTESKGKKTNSATSKVRGLKHTERTVLRSPESSTSRRTDLRNLIEEKCRVAKTAESEARAAEAEAKKDHFPWKTE
        T+  E  L R PRKGK P+E  +E       + TNS  S++R     E  + R  ++  SR               K  + +        K +H     E
Subjt:  TKLHEGDLIRDPRKGKNPVEYVNESKTESKGKKTNSATSKVRGLKHTERTVLRSPESSTSRRTDLRNLIEEKCRVAKTAESEARAAEAEAKKDHFPWKTE

Query:  LLNTLKELGNPQGDLPKLKDS---GGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFRPYD
         ++  K+    + +L + + S    G D+EEL+DQ D PF EE+M  ++P KFK+PT + +D
Subjt:  LLNTLKELGNPQGDLPKLKDS---GGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFRPYD

A0A6J1DWY0 uncharacterized protein LOC1110252933.5e-0735.12Show/hide
Query:  EGDLIRDPRKGKNPVEYVNESKTESKGKKTNSATSKVR-GLKHTERTVLRSPESSTSRRTDLRNLIEEKCRVAKTAESEARAAEAEAKKDHFPWKTELLN
        E  L+RDP+KGK P     ES TE   + TNS  SK+R G    +RT +  P                     KT +     A    K DH    +E ++
Subjt:  EGDLIRDPRKGKNPVEYVNESKTESKGKKTNSATSKVR-GLKHTERTVLRSPESSTSRRTDLRNLIEEKCRVAKTAESEARAAEAEAKKDHFPWKTELLN

Query:  TLKELGNPQGDLPKLKD------SGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFRPYDGKKDPV
          K  G P  D P+  +        G D+EEL+DQ D PFTEE+M+ ++P KFK+PT + +D   DPV
Subjt:  TLKELGNPQGDLPKLKD------SGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFRPYDGKKDPV

A0A6J1E1E7 uncharacterized protein LOC1110255482.5e-0540.51Show/hide
Query:  AKKDHFPWKTE--LLNTLKELGNPQGDLPK-LKDSGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFRPYDGKKDPV
        +K DH    +E   LN  K +  P+    +  +   G D+EEL+ Q D PFTEE+M+ ++P KFK+PT +P+DG  +PV
Subjt:  AKKDHFPWKTE--LLNTLKELGNPQGDLPK-LKDSGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFRPYDGKKDPV

A0A7J0DBQ5 Retrotrans_gag domain-containing protein3.3e-0547.17Show/hide
Query:  GDLPKLKDSGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFRPYDGKKDPV
        G +  +K+ G   +EELI++ D PFT  VM+  +P KFK+PT  P+DG KDP+
Subjt:  GDLPKLKDSGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFRPYDGKKDPV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCGGAGTTTGTCCAGAATACTCCAGATCCTGGATAAACCCGACCCTAGCACCAAACTCCATGAGGGGGACTTGATTAGAGACCCGAGGAAGGGGAAGAATCCAGT
CGAATATGTGAATGAATCAAAGACAGAATCCAAAGGAAAGAAGACCAACAGCGCAACCAGCAAGGTCAGAGGGCTAAAGCACACAGAGCGCACAGTACTGAGGAGCCCTG
AATCAAGTACCAGCCGTAGAACAGACCTGAGAAATCTGATCGAGGAAAAGTGCAGAGTGGCCAAAACTGCCGAGTCTGAGGCCAGAGCTGCCGAGGCCGAGGCTAAGAAA
GACCATTTCCCTTGGAAGACTGAGCTTCTAAACACACTAAAGGAGCTTGGAAATCCTCAGGGAGACCTGCCTAAGTTGAAGGATTCGGGAGGCCAAGACATCGAAGAACT
AATCGACCAAGTCGACCCACCCTTCACAGAAGAAGTCATGAAAGCTGAGATGCCACAGAAGTTCAAGGTACCTACATTCAGGCCGTATGATGGCAAGAAAGACCCTGTCT
AG
mRNA sequenceShow/hide mRNA sequence
ATGAATCGGAGTTTGTCCAGAATACTCCAGATCCTGGATAAACCCGACCCTAGCACCAAACTCCATGAGGGGGACTTGATTAGAGACCCGAGGAAGGGGAAGAATCCAGT
CGAATATGTGAATGAATCAAAGACAGAATCCAAAGGAAAGAAGACCAACAGCGCAACCAGCAAGGTCAGAGGGCTAAAGCACACAGAGCGCACAGTACTGAGGAGCCCTG
AATCAAGTACCAGCCGTAGAACAGACCTGAGAAATCTGATCGAGGAAAAGTGCAGAGTGGCCAAAACTGCCGAGTCTGAGGCCAGAGCTGCCGAGGCCGAGGCTAAGAAA
GACCATTTCCCTTGGAAGACTGAGCTTCTAAACACACTAAAGGAGCTTGGAAATCCTCAGGGAGACCTGCCTAAGTTGAAGGATTCGGGAGGCCAAGACATCGAAGAACT
AATCGACCAAGTCGACCCACCCTTCACAGAAGAAGTCATGAAAGCTGAGATGCCACAGAAGTTCAAGGTACCTACATTCAGGCCGTATGATGGCAAGAAAGACCCTGTCT
AG
Protein sequenceShow/hide protein sequence
MNRSLSRILQILDKPDPSTKLHEGDLIRDPRKGKNPVEYVNESKTESKGKKTNSATSKVRGLKHTERTVLRSPESSTSRRTDLRNLIEEKCRVAKTAESEARAAEAEAKK
DHFPWKTELLNTLKELGNPQGDLPKLKDSGGQDIEELIDQVDPPFTEEVMKAEMPQKFKVPTFRPYDGKKDPV