; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000412 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000412
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr4:6546483..6548121
RNA-Seq ExpressionLag0000412
SyntenyLag0000412
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-0756.92Show/hide
Query:  MDNLEVKLFDEVNRDKKLHSSVPSCMKRKLSVLINTEGSLKVKQNLIILINPTSQGSDQDHDEDE
        M +L+VK F E N D K+HS VPS MKRKLSV INTEGSL VK   II  NP ++G ++  DE++
Subjt:  MDNLEVKLFDEVNRDKKLHSSVPSCMKRKLSVLINTEGSLKVKQNLIILINPTSQGSDQDHDEDE

KAA0061331.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.6e-0856.92Show/hide
Query:  MDNLEVKLFDEVNRDKKLHSSVPSCMKRKLSVLINTEGSLKVKQNLIILINPTSQGSDQDHDEDE
        M +L+ K F E N D K+HS VPS MKRKLSV INTEGSL VK   II  NPT++G ++  DE++
Subjt:  MDNLEVKLFDEVNRDKKLHSSVPSCMKRKLSVLINTEGSLKVKQNLIILINPTSQGSDQDHDEDE

KAA0063700.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.9e-0958.46Show/hide
Query:  MDNLEVKLFDEVNRDKKLHSSVPSCMKRKLSVLINTEGSLKVKQNLIILINPTSQGSDQDHDEDE
        M +L+ KLF E N D  +HS VPS MKRKLS+ INTEGSL VK   II  NPT++G +Q  DE+E
Subjt:  MDNLEVKLFDEVNRDKKLHSSVPSCMKRKLSVLINTEGSLKVKQNLIILINPTSQGSDQDHDEDE

KAA0065303.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.9e-0859.32Show/hide
Query:  MDNLEVKLFDEVNRDKKLHSSVPSCMKRKLSVLINTEGSLKVKQNLIILINPTSQGSDQ
        M + + K F + N D K+HS VPSCMKRKLSV INTEGSL VK   II  NPT++G +Q
Subjt:  MDNLEVKLFDEVNRDKKLHSSVPSCMKRKLSVLINTEGSLKVKQNLIILINPTSQGSDQ

KAA0068201.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-0756.92Show/hide
Query:  MDNLEVKLFDEVNRDKKLHSSVPSCMKRKLSVLINTEGSLKVKQNLIILINPTSQGSDQDHDEDE
        M +L+ K F E N D K+HS VPS MKRKLSV INTEGSL VK   II  NP ++G +Q  DE++
Subjt:  MDNLEVKLFDEVNRDKKLHSSVPSCMKRKLSVLINTEGSLKVKQNLIILINPTSQGSDQDHDEDE

TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein1.1e-0756.92Show/hide
Query:  MDNLEVKLFDEVNRDKKLHSSVPSCMKRKLSVLINTEGSLKVKQNLIILINPTSQGSDQDHDEDE
        M +L+VK F E N D K+HS VPS MKRKLSV INTEGSL VK   II  NP ++G ++  DE++
Subjt:  MDNLEVKLFDEVNRDKKLHSSVPSCMKRKLSVLINTEGSLKVKQNLIILINPTSQGSDQDHDEDE

A0A5A7V6H5 Ty3-gypsy retrotransposon protein3.7e-0856.92Show/hide
Query:  MDNLEVKLFDEVNRDKKLHSSVPSCMKRKLSVLINTEGSLKVKQNLIILINPTSQGSDQDHDEDE
        M +L+ K F E N D K+HS VPS MKRKLSV INTEGSL VK   II  NPT++G ++  DE++
Subjt:  MDNLEVKLFDEVNRDKKLHSSVPSCMKRKLSVLINTEGSLKVKQNLIILINPTSQGSDQDHDEDE

A0A5A7V935 Ty3-gypsy retrotransposon protein3.3e-0958.46Show/hide
Query:  MDNLEVKLFDEVNRDKKLHSSVPSCMKRKLSVLINTEGSLKVKQNLIILINPTSQGSDQDHDEDE
        M +L+ KLF E N D  +HS VPS MKRKLS+ INTEGSL VK   II  NPT++G +Q  DE+E
Subjt:  MDNLEVKLFDEVNRDKKLHSSVPSCMKRKLSVLINTEGSLKVKQNLIILINPTSQGSDQDHDEDE

A0A5A7VAV4 Retrotransposon gag protein4.8e-0859.32Show/hide
Query:  MDNLEVKLFDEVNRDKKLHSSVPSCMKRKLSVLINTEGSLKVKQNLIILINPTSQGSDQ
        M + + K F + N D K+HS VPSCMKRKLSV INTEGSL VK   II  NPT++G +Q
Subjt:  MDNLEVKLFDEVNRDKKLHSSVPSCMKRKLSVLINTEGSLKVKQNLIILINPTSQGSDQ

A0A5A7VRG7 Retrotransposon gag protein6.3e-0856.92Show/hide
Query:  MDNLEVKLFDEVNRDKKLHSSVPSCMKRKLSVLINTEGSLKVKQNLIILINPTSQGSDQDHDEDE
        M +L+ K F E N D K+HS VPS MKRKLSV INTEGSL VK   II  NP ++G +Q  DE++
Subjt:  MDNLEVKLFDEVNRDKKLHSSVPSCMKRKLSVLINTEGSLKVKQNLIILINPTSQGSDQDHDEDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACCGCGACAAGAAGCTTCATAGTAGCGTCCCGTCATGTATGAAGAGGAAGTTATCTGTTCTCATAAATACAGA
AGGTTCCTTGAAGGTGAAACAAAATCTCATTATCTTGATCAATCCTACAAGTCAAGGATCTGATCAAGACCATGATGAAGATGAGGGCTTTTACAATGTAAAAGCTCTTT
ATCGCAAGAGCCTAAATTGCATAATGCTCCTAGCCCACACGAGCTTAAAAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCC
AAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTA
TGTGGTGCGCTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGTAGCTTCGCTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCA
GTTCCTTCTCTCAAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAGTTCTTTCTCCCAAAGTTCGAAGGTTCACGCACTTCGCTACTGTTCCTTCTCCCAAATTCGAAGGT
TCTCACGCGCTTCACTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCCACTGCTGCAGTTCATTCCTCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCC
TCCAAGTTCGAAGGTTCTCACCTGCTTCACTGCAGTTCCTTCCTCCAAGTTCGGAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCGTCCAAGTTCAAAGGTTCTCACACG
CTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTCCTCATGCTACGCTCGGCTGCACTGCTGCGCTA
CTTCCTAAAGTCCAAAGACGTCAATTGTCCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTCCTCATGCTACGCTCGGCTGCACTGCTGCGCTACTTCCTAAAGT
CCAAAGACGGCGTGACGGCGACACAAGTCCAAGGAACATGTACCAAAGCCAGGAACATGTCCCTGTACTCATGCTGAAAGATGTGGCGGCAGCAAAAGTCCAAGGAGCAC
GTCACGTCCTTGAACTCAAGCTGAAAGACGTGGCGGCGGCAAAAGTCCAAGGAGCACATCACGTCCTTGAACTCATGCTGAAAGACGTGGCGGCGGCAAAAGTCCAAGGA
GCACGTCATGTCCTTGAACTCATGCTGAAAGACGTGGCGGCGGCAAAAGTCCAAGGAACATGTCCCAAACCAAGGAACATGTCCCTGCACTCGTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACCGCGACAAGAAGCTTCATAGTAGCGTCCCGTCATGTATGAAGAGGAAGTTATCTGTTCTCATAAATACAGA
AGGTTCCTTGAAGGTGAAACAAAATCTCATTATCTTGATCAATCCTACAAGTCAAGGATCTGATCAAGACCATGATGAAGATGAGGGCTTTTACAATGTAAAAGCTCTTT
ATCGCAAGAGCCTAAATTGCATAATGCTCCTAGCCCACACGAGCTTAAAAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCC
AAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTA
TGTGGTGCGCTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGTAGCTTCGCTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCA
GTTCCTTCTCTCAAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAGTTCTTTCTCCCAAAGTTCGAAGGTTCACGCACTTCGCTACTGTTCCTTCTCCCAAATTCGAAGGT
TCTCACGCGCTTCACTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCCACTGCTGCAGTTCATTCCTCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCC
TCCAAGTTCGAAGGTTCTCACCTGCTTCACTGCAGTTCCTTCCTCCAAGTTCGGAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCGTCCAAGTTCAAAGGTTCTCACACG
CTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTCCTCATGCTACGCTCGGCTGCACTGCTGCGCTA
CTTCCTAAAGTCCAAAGACGTCAATTGTCCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTCCTCATGCTACGCTCGGCTGCACTGCTGCGCTACTTCCTAAAGT
CCAAAGACGGCGTGACGGCGACACAAGTCCAAGGAACATGTACCAAAGCCAGGAACATGTCCCTGTACTCATGCTGAAAGATGTGGCGGCAGCAAAAGTCCAAGGAGCAC
GTCACGTCCTTGAACTCAAGCTGAAAGACGTGGCGGCGGCAAAAGTCCAAGGAGCACATCACGTCCTTGAACTCATGCTGAAAGACGTGGCGGCGGCAAAAGTCCAAGGA
GCACGTCATGTCCTTGAACTCATGCTGAAAGACGTGGCGGCGGCAAAAGTCCAAGGAACATGTCCCAAACCAAGGAACATGTCCCTGCACTCGTGCTGA
Protein sequenceShow/hide protein sequence
MDNLEVKLFDEVNRDKKLHSSVPSCMKRKLSVLINTEGSLKVKQNLIILINPTSQGSDQDHDEDEGFYNVKALYRKSLNCIMLLAHTSLKVPSLQVRGSLHCTLLRCSFS
KFEGSSLYPAALFLLQVRGFSVVRLLRCSSSKCEGSYVVRCCIVPSSLKFDGSHVASLEFLLPKFEGSHALRCSSFSQRSKVLTRCVAVLSPKVRRFTHFATVPSPKFEG
SHALHCSSFLQVRRFSTAAVHSSKFEGSHVASLQFLPPSSKVLTCFTAVPSSKFGGSHALRCSSFVQVQRFSHASLQFLPPSSKVLTRFVAVPSSKFEGPHATLGCTAAL
LPKVQRRQLSSRCAASFSKFEGPHATLGCTAALLPKVQRRRDGDTSPRNMYQSQEHVPVLMLKDVAAAKVQGARHVLELKLKDVAAAKVQGAHHVLELMLKDVAAAKVQG
ARHVLELMLKDVAAAKVQGTCPKPRNMSLHSC