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Lag0000449 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000449
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr4:7549973..7551174
RNA-Seq ExpressionLag0000449
SyntenyLag0000449
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026154.1 gag/pol protein [Cucumis melo var. makuwa]4.1e-3050.98Show/hide
Query:  FVLRIQIVRNRVEFILSKKLFLETPQEVEDMRRMPYAIGL-----------HGVHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICYAVGI
        +V  I ++ N V ++   K +L    +++D+    Y +G+           H VHLSKE CPKTPQE++DMR+IPYAS +GSLMY MLCTR DICYAVGI
Subjt:  FVLRIQIVRNRVEFILSKKLFLETPQEVEDMRRMPYAIGL-----------HGVHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICYAVGI

Query:  VSTYQ---------SAENIASCEAAIEIVRLRKFLADLECVPNVNLPIRLYSD
        VS+ +          AE +A+CEAA E V LRKFL DLE VPN+NLPI LY D
Subjt:  VSTYQ---------SAENIASCEAAIEIVRLRKFLADLECVPNVNLPIRLYSD
KAA0033228.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-2944.57Show/hide
Query:  FVLRIQIVRNRVEFILSKKLFLETPQEVEDMRRMPYAIG-------------LHGVHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICYAV
        +V  I ++ N V ++   K +L    +++D+    Y +G             LHGVHLSKE CPK P E++DMR+IPYASAVGSLM+ MLCTRPDICYAV
Subjt:  FVLRIQIVRNRVEFILSKKLFLETPQEVEDMRRMPYAIG-------------LHGVHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICYAV

Query:  GIVSTYQS--------------------------------------AENIASCEAAIEIVRLRKFLADLECVPNVNLPIRLYSD
        GIVS YQS                                       E +A+CEAA E+V LRKFL DLE VPN+NLPI LY D
Subjt:  GIVSTYQS--------------------------------------AENIASCEAAIEIVRLRKFLADLECVPNVNLPIRLYSD
KAA0053385.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]8.2e-3152.23Show/hide
Query:  MKIWKKLKFVLRIQIVRNRVEFILS-------KKLFLETPQEVEDMRRMPYAIGLHGVHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICY
        MK   + ++VL IQI+R+R   +L+        K+ +    +      +P+    HGVHLSKE CPKTPQE +DMR+IPYASAVG+LMYVMLCTRPDICY
Subjt:  MKIWKKLKFVLRIQIVRNRVEFILS-------KKLFLETPQEVEDMRRMPYAIGLHGVHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICY

Query:  AVGIVSTYQ---------SAENIASCEAAIEIVRLRKFLADLECVPNVNLPIRLYSD
        AVGIVS+ +           E +A+C+AA E + LRKFL DLE VPN+NLPI LY D
Subjt:  AVGIVSTYQ---------SAENIASCEAAIEIVRLRKFLADLECVPNVNLPIRLYSD
KAA0060794.1 putative Integrase core domain [Cucumis melo var. makuwa]4.5e-2947.73Show/hide
Query:  MKIWKKLKFVLRIQIVRNRVEFILS-------KKLFLETPQEVEDMRRMPYAIGLHGVHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICY
        MK   + ++V+ IQI+R+R    L+        K+ +    +      +P+    HGVHLSKE CPKTPQE++DMR+IPYASAVGSLMY MLCTRPDICY
Subjt:  MKIWKKLKFVLRIQIVRNRVEFILS-------KKLFLETPQEVEDMRRMPYAIGLHGVHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICY

Query:  AVGIVS----------------------------TYQSAENIASCEAAIEIVRLRKFLADLECVPNVNLPIRLYSD
        AVGIVS                            +   AE +A+CEAA E V LRKFL DLE VPN+NLPI LY D
Subjt:  AVGIVS----------------------------TYQSAENIASCEAAIEIVRLRKFLADLECVPNVNLPIRLYSD
TYK20422.1 gag/pol protein [Cucumis melo var. makuwa]7.0e-3046.45Show/hide
Query:  MKIWKKLKFVLRIQIVRNRVEFILS-------KKLFLETPQEVEDMRRMPYAIGLHGVHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICY
        MK   + ++VLRIQI+R+R    L+        K+ +    +      +P+    HGVHLSKE CPKTPQE++DMR+IPYASAVGSLMY MLCTRPDICY
Subjt:  MKIWKKLKFVLRIQIVRNRVEFILS-------KKLFLETPQEVEDMRRMPYAIGLHGVHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICY

Query:  AVGIVSTYQS-----------------------------------AENIASCEAAIEIVRLRKFLADLECVPNVNLPIRLYSD
        AVGIVS +QS                                   AE + +CE A E V LRKF+ DLE +PN+NLPI LYSD
Subjt:  AVGIVSTYQS-----------------------------------AENIASCEAAIEIVRLRKFLADLECVPNVNLPIRLYSD
TrEMBL top hitse value%identityAlignment
A0A5A7SKC5 Gag/pol protein2.0e-3050.98Show/hide
Query:  FVLRIQIVRNRVEFILSKKLFLETPQEVEDMRRMPYAIGL-----------HGVHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICYAVGI
        +V  I ++ N V ++   K +L    +++D+    Y +G+           H VHLSKE CPKTPQE++DMR+IPYAS +GSLMY MLCTR DICYAVGI
Subjt:  FVLRIQIVRNRVEFILSKKLFLETPQEVEDMRRMPYAIGL-----------HGVHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICYAVGI

Query:  VSTYQ---------SAENIASCEAAIEIVRLRKFLADLECVPNVNLPIRLYSD
        VS+ +          AE +A+CEAA E V LRKFL DLE VPN+NLPI LY D
Subjt:  VSTYQ---------SAENIASCEAAIEIVRLRKFLADLECVPNVNLPIRLYSD
A0A5A7SRR6 Gag/pol protein9.8e-3044.57Show/hide
Query:  FVLRIQIVRNRVEFILSKKLFLETPQEVEDMRRMPYAIG-------------LHGVHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICYAV
        +V  I ++ N V ++   K +L    +++D+    Y +G             LHGVHLSKE CPK P E++DMR+IPYASAVGSLM+ MLCTRPDICYAV
Subjt:  FVLRIQIVRNRVEFILSKKLFLETPQEVEDMRRMPYAIG-------------LHGVHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICYAV

Query:  GIVSTYQS--------------------------------------AENIASCEAAIEIVRLRKFLADLECVPNVNLPIRLYSD
        GIVS YQS                                       E +A+CEAA E+V LRKFL DLE VPN+NLPI LY D
Subjt:  GIVSTYQS--------------------------------------AENIASCEAAIEIVRLRKFLADLECVPNVNLPIRLYSD
A0A5A7UI63 Putative gag-pol polyprotein4.0e-3152.23Show/hide
Query:  MKIWKKLKFVLRIQIVRNRVEFILS-------KKLFLETPQEVEDMRRMPYAIGLHGVHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICY
        MK   + ++VL IQI+R+R   +L+        K+ +    +      +P+    HGVHLSKE CPKTPQE +DMR+IPYASAVG+LMYVMLCTRPDICY
Subjt:  MKIWKKLKFVLRIQIVRNRVEFILS-------KKLFLETPQEVEDMRRMPYAIGLHGVHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICY

Query:  AVGIVSTYQ---------SAENIASCEAAIEIVRLRKFLADLECVPNVNLPIRLYSD
        AVGIVS+ +           E +A+C+AA E + LRKFL DLE VPN+NLPI LY D
Subjt:  AVGIVSTYQ---------SAENIASCEAAIEIVRLRKFLADLECVPNVNLPIRLYSD
A0A5A7V0F0 Putative Integrase core domain2.2e-2947.73Show/hide
Query:  MKIWKKLKFVLRIQIVRNRVEFILS-------KKLFLETPQEVEDMRRMPYAIGLHGVHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICY
        MK   + ++V+ IQI+R+R    L+        K+ +    +      +P+    HGVHLSKE CPKTPQE++DMR+IPYASAVGSLMY MLCTRPDICY
Subjt:  MKIWKKLKFVLRIQIVRNRVEFILS-------KKLFLETPQEVEDMRRMPYAIGLHGVHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICY

Query:  AVGIVS----------------------------TYQSAENIASCEAAIEIVRLRKFLADLECVPNVNLPIRLYSD
        AVGIVS                            +   AE +A+CEAA E V LRKFL DLE VPN+NLPI LY D
Subjt:  AVGIVS----------------------------TYQSAENIASCEAAIEIVRLRKFLADLECVPNVNLPIRLYSD
A0A5D3DA25 Gag/pol protein3.4e-3046.45Show/hide
Query:  MKIWKKLKFVLRIQIVRNRVEFILS-------KKLFLETPQEVEDMRRMPYAIGLHGVHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICY
        MK   + ++VLRIQI+R+R    L+        K+ +    +      +P+    HGVHLSKE CPKTPQE++DMR+IPYASAVGSLMY MLCTRPDICY
Subjt:  MKIWKKLKFVLRIQIVRNRVEFILS-------KKLFLETPQEVEDMRRMPYAIGLHGVHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICY

Query:  AVGIVSTYQS-----------------------------------AENIASCEAAIEIVRLRKFLADLECVPNVNLPIRLYSD
        AVGIVS +QS                                   AE + +CE A E V LRKF+ DLE +PN+NLPI LYSD
Subjt:  AVGIVSTYQS-----------------------------------AENIASCEAAIEIVRLRKFLADLECVPNVNLPIRLYSD
SwissProt top hitse value%identityAlignment
P04146 Copia protein1.1e-0439.68Show/hide
Query:  PYASAVGSLMYVMLCTRPDICYAVGIVSTYQSAENIASCEAAIEIVRLRKFLADLECVPNVNL
        P  S +G LMY+MLCTRPD+  AV I+S Y S  N    +    ++R  K   D++ +   NL
Subjt:  PYASAVGSLMYVMLCTRPDICYAVGIVSTYQSAENIASCEAAIEIVRLRKFLADLECVPNVNL
P0CV72 Secreted RxLR effector protein 1612.3e-0452.78Show/hide
Query:  MRQIPYASAVGSLMYVMLCTRPDICYAVGIVSTYQS
        M+ +PY SAVG++MY+M+ TRPD+  AVG++S + S
Subjt:  MRQIPYASAVGSLMYVMLCTRPDICYAVGIVSTYQS
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-1338.69Show/hide
Query:  VLRIQIVRNRV--EFILSKKLFLETPQEVEDMRR-MPYAIGLHG-VHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICYAVGIVSTYQSAE
        +L ++IVR R   +  LS++ ++E   E  +M+   P +  L G + LSK+ CP T +E  +M ++PY+SAVGSLMY M+CTRPDI +AVG+VS +    
Subjt:  VLRIQIVRNRV--EFILSKKLFLETPQEVEDMRR-MPYAIGLHG-VHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICYAVGIVSTYQSAE

Query:  NIASCEAAIEIVR-LRKFLADLECVPNVNLPIRLYSD
             EA   I+R LR    D  C    +  ++ Y+D
Subjt:  NIASCEAAIEIVR-LRKFLADLECVPNVNLPIRLYSD
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATTTGGAAGAAGCTAAAGTTTGTTCTTCGGATCCAAATCGTCAGGAACCGCGTGGAATTCATTTTGTCTAAGAAACTGTTTCTTGAGACACCTCAAGAAGTTGA
GGACATGAGACGAATGCCCTATGCAATAGGATTGCATGGGGTTCACTTGTCTAAGGAATGGTGTCCTAAGACACCTCAAGAGATTAAGGATATGAGACAGATTCCCTACG
CCTCTGCTGTGGGCAGCTTAATGTATGTAATGCTTTGCACGAGGCCTGACATCTGTTATGCTGTAGGAATAGTCAGCACATATCAATCAGCCGAAAATATAGCTTCTTGT
GAAGCAGCGATAGAGATTGTAAGGCTTAGAAAGTTCTTGGCTGATTTGGAATGTGTTCCAAATGTGAACTTGCCCATCAGACTTTATAGTGATACAGTGGTGCTGTGGCA
AATTCATAAGAACTTTGCAGCCCAAGACAAGCTAGCACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATTTGGAAGAAGCTAAAGTTTGTTCTTCGGATCCAAATCGTCAGGAACCGCGTGGAATTCATTTTGTCTAAGAAACTGTTTCTTGAGACACCTCAAGAAGTTGA
GGACATGAGACGAATGCCCTATGCAATAGGATTGCATGGGGTTCACTTGTCTAAGGAATGGTGTCCTAAGACACCTCAAGAGATTAAGGATATGAGACAGATTCCCTACG
CCTCTGCTGTGGGCAGCTTAATGTATGTAATGCTTTGCACGAGGCCTGACATCTGTTATGCTGTAGGAATAGTCAGCACATATCAATCAGCCGAAAATATAGCTTCTTGT
GAAGCAGCGATAGAGATTGTAAGGCTTAGAAAGTTCTTGGCTGATTTGGAATGTGTTCCAAATGTGAACTTGCCCATCAGACTTTATAGTGATACAGTGGTGCTGTGGCA
AATTCATAAGAACTTTGCAGCCCAAGACAAGCTAGCACATTGA
Protein sequenceShow/hide protein sequence
MKIWKKLKFVLRIQIVRNRVEFILSKKLFLETPQEVEDMRRMPYAIGLHGVHLSKEWCPKTPQEIKDMRQIPYASAVGSLMYVMLCTRPDICYAVGIVSTYQSAENIASC
EAAIEIVRLRKFLADLECVPNVNLPIRLYSDTVVLWQIHKNFAAQDKLAH