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Lag0000458 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000458
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr4:7825730..7826586
RNA-Seq ExpressionLag0000458
SyntenyLag0000458
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0631995.1 hypothetical protein [Gossypium davidsonii]3.8e-1539.07Show/hide
Query:  IRSKNPHIVFITKTKSGSARMEKVKNDLNFDCGF-----CVSNYWGGGDFNEILFADEKRGRAGRGQNLMEAFRLALDKCNLADLVAPRNVFTWMKRVRG
        +R  NP +VF+ +TK   +R+E+++      CG+        N    GDFNEI +  EKRG   R ++ M  FR  L  C +++L   R  FTW K    
Subjt:  IRSKNPHIVFITKTKSGSARMEKVKNDLNFDCGF-----CVSNYWGGGDFNEILFADEKRGRAGRGQNLMEAFRLALDKCNLADLVAPRNVFTWMKRVRG

Query:  GTTIAERLDRFLANDEFRSLFRNIGISHLNKHGSDHHPIVA-SMAKSGSTK
           I ERLDR + NDE+ SLF N  +SHL+   SDH P++  S  +S STK
Subjt:  GTTIAERLDRFLANDEFRSLFRNIGISHLNKHGSDHHPIVA-SMAKSGSTK

MBA0667752.1 hypothetical protein [Gossypium klotzschianum]1.7e-1539.74Show/hide
Query:  IRSKNPHIVFITKTKSGSARMEKVKNDLNFDCGF-----CVSNYWGGGDFNEILFADEKRGRAGRGQNLMEAFRLALDKCNLADLVAPRNVFTWMKRVRG
        +R  NP +VF+ +TK   +R+EK++      CG+        N    GDFNEI +  EKRG   R ++ M  FR  L  C +++L   R  FTW K    
Subjt:  IRSKNPHIVFITKTKSGSARMEKVKNDLNFDCGF-----CVSNYWGGGDFNEILFADEKRGRAGRGQNLMEAFRLALDKCNLADLVAPRNVFTWMKRVRG

Query:  GTTIAERLDRFLANDEFRSLFRNIGISHLNKHGSDHHPIVA-SMAKSGSTK
           I ERLDR + NDE+ SLF N  +SHL+   SDH P++  S  +S STK
Subjt:  GTTIAERLDRFLANDEFRSLFRNIGISHLNKHGSDHHPIVA-SMAKSGSTK

MBA0699030.1 hypothetical protein [Gossypium aridum]1.4e-1740.38Show/hide
Query:  HEIRSKNPHIVFITKTKSGSARMEKVKNDLNFDCGFCV-SNYWGG-------GDFNEILFADEKRGRAGRGQNLMEAFRLALDKCNLADLVAPRNVFTWM
        H +R  NP +VF+ +TK   +R+E+++    +  G  V SN   G       GDFNEI +  EKRG   R ++ M  FR  L  C +++L   R  FTW 
Subjt:  HEIRSKNPHIVFITKTKSGSARMEKVKNDLNFDCGFCV-SNYWGG-------GDFNEILFADEKRGRAGRGQNLMEAFRLALDKCNLADLVAPRNVFTWM

Query:  KRVRGGTTIAERLDRFLANDEFRSLFRNIGISHLNKHGSDHHPIVA-SMAKSGSTK
        K       I ERLDR + NDE+ SLF N  +SHL+   SDH P++  S  KS STK
Subjt:  KRVRGGTTIAERLDRFLANDEFRSLFRNIGISHLNKHGSDHHPIVA-SMAKSGSTK

XP_021855734.1 uncharacterized protein LOC110795065 [Spinacia oleracea]3.8e-1538.28Show/hide
Query:  GFCVSNYWGGGDFNEILFADEKRGRAGRGQNLMEAFRLALDKCNLADLVAPRNVFTWMKRVRGGTTIAERLDRFLANDEFRSLFRNIGISHLNKHGSDHH
        G C+S     GDFNEI    EK G   RG+  M+AFR A+D+C + DL    ++FTW + +   T + ERLDRFLAN  + +LF N  + HL ++ SDH 
Subjt:  GFCVSNYWGGGDFNEILFADEKRGRAGRGQNLMEAFRLALDKCNLADLVAPRNVFTWMKRVRGGTTIAERLDRFLANDEFRSLFRNIGISHLNKHGSDHH

Query:  PIVASMAKSGSTKEVFKSEGIKALFAAE
        P++      G   +V +    +AL+ ++
Subjt:  PIVASMAKSGSTKEVFKSEGIKALFAAE

XP_030495196.1 uncharacterized protein LOC115710989 [Cannabis sativa]2.2e-1536.81Show/hide
Query:  IRSKNPHIVFITKTKSGSARMEKVKNDLNFDCGFCVSNYWGGGDFNEILFADEKRGRAGRGQNLMEAFRLALDKCNLADLVAPRNVFTWMKRVRGGTTIA
        +R ++P ++F+ +T+ GS  + + +  L F  G   S  +  GDFNEIL   +K G + R ++ +EAFR  LD C+L DL    + FTW+K  +  TTI 
Subjt:  IRSKNPHIVFITKTKSGSARMEKVKNDLNFDCGFCVSNYWGGGDFNEILFADEKRGRAGRGQNLMEAFRLALDKCNLADLVAPRNVFTWMKRVRGGTTIA

Query:  ERLDRFLANDEFRSLFRNIGISHLNKHGSDHHPIVASMAKSGST
        ERLD    N  + S+F    +SHL+   SDH  I  ++    ST
Subjt:  ERLDRFLANDEFRSLFRNIGISHLNKHGSDHHPIVASMAKSGST

TrEMBL top hitse value%identityAlignment
A0A5B6WBZ4 Reverse transcriptase9.2e-1538.62Show/hide
Query:  HEIRSKNPHIVFITKTKSGSARMEKVKNDLNFDCGFCVSNYW--GG------GDFNEILFADEKRGRAGRGQNLMEAFRLALDKCNLADLVAPRNVFTWM
        H  +   P +V   +TK    +MEKV+    F  G  V +    GG      GDFNEIL+  EK+G   R +  M+AFR  L+ C+L D+    N FTW 
Subjt:  HEIRSKNPHIVFITKTKSGSARMEKVKNDLNFDCGFCVSNYW--GG------GDFNEILFADEKRGRAGRGQNLMEAFRLALDKCNLADLVAPRNVFTWM

Query:  KRVRGGTTIAERLDRFLANDEFRSLFRNIGISHLNKHGSDHHPIV
        +     T I ERLDR +A +E+ SLF +  I HL    SDH P++
Subjt:  KRVRGGTTIAERLDRFLANDEFRSLFRNIGISHLNKHGSDHHPIV

A0A7J6GL46 CCHC-type domain-containing protein4.5e-1443.3Show/hide
Query:  GGDFNEILFADEKRGRAGRGQNLMEAFRLALDKCNLADLVAPRNVFTWMKRVRGGTTIAERLDRFLANDEFRSLFRNIGISHLNKHGSDHHPIVASM
        GGDFNEIL  +EK+G + R  + M  F+ ALD+C+LADL      FTW+ + +GG  + ERLDR+  N  +  LF  + + + +   SDH PIVA++
Subjt:  GGDFNEILFADEKRGRAGRGQNLMEAFRLALDKCNLADLVAPRNVFTWMKRVRGGTTIAERLDRFLANDEFRSLFRNIGISHLNKHGSDHHPIVASM

A0A7J8T1R6 Uncharacterized protein1.8e-1539.07Show/hide
Query:  IRSKNPHIVFITKTKSGSARMEKVKNDLNFDCGF-----CVSNYWGGGDFNEILFADEKRGRAGRGQNLMEAFRLALDKCNLADLVAPRNVFTWMKRVRG
        +R  NP +VF+ +TK   +R+E+++      CG+        N    GDFNEI +  EKRG   R ++ M  FR  L  C +++L   R  FTW K    
Subjt:  IRSKNPHIVFITKTKSGSARMEKVKNDLNFDCGF-----CVSNYWGGGDFNEILFADEKRGRAGRGQNLMEAFRLALDKCNLADLVAPRNVFTWMKRVRG

Query:  GTTIAERLDRFLANDEFRSLFRNIGISHLNKHGSDHHPIVA-SMAKSGSTK
           I ERLDR + NDE+ SLF N  +SHL+   SDH P++  S  +S STK
Subjt:  GTTIAERLDRFLANDEFRSLFRNIGISHLNKHGSDHHPIVA-SMAKSGSTK

A0A7J8VYU1 Uncharacterized protein8.3e-1639.74Show/hide
Query:  IRSKNPHIVFITKTKSGSARMEKVKNDLNFDCGF-----CVSNYWGGGDFNEILFADEKRGRAGRGQNLMEAFRLALDKCNLADLVAPRNVFTWMKRVRG
        +R  NP +VF+ +TK   +R+EK++      CG+        N    GDFNEI +  EKRG   R ++ M  FR  L  C +++L   R  FTW K    
Subjt:  IRSKNPHIVFITKTKSGSARMEKVKNDLNFDCGF-----CVSNYWGGGDFNEILFADEKRGRAGRGQNLMEAFRLALDKCNLADLVAPRNVFTWMKRVRG

Query:  GTTIAERLDRFLANDEFRSLFRNIGISHLNKHGSDHHPIVA-SMAKSGSTK
           I ERLDR + NDE+ SLF N  +SHL+   SDH P++  S  +S STK
Subjt:  GTTIAERLDRFLANDEFRSLFRNIGISHLNKHGSDHHPIVA-SMAKSGSTK

A0A7J8YIC1 DUF4283 domain-containing protein6.8e-1840.38Show/hide
Query:  HEIRSKNPHIVFITKTKSGSARMEKVKNDLNFDCGFCV-SNYWGG-------GDFNEILFADEKRGRAGRGQNLMEAFRLALDKCNLADLVAPRNVFTWM
        H +R  NP +VF+ +TK   +R+E+++    +  G  V SN   G       GDFNEI +  EKRG   R ++ M  FR  L  C +++L   R  FTW 
Subjt:  HEIRSKNPHIVFITKTKSGSARMEKVKNDLNFDCGFCV-SNYWGG-------GDFNEILFADEKRGRAGRGQNLMEAFRLALDKCNLADLVAPRNVFTWM

Query:  KRVRGGTTIAERLDRFLANDEFRSLFRNIGISHLNKHGSDHHPIVA-SMAKSGSTK
        K       I ERLDR + NDE+ SLF N  +SHL+   SDH P++  S  KS STK
Subjt:  KRVRGGTTIAERLDRFLANDEFRSLFRNIGISHLNKHGSDHHPIVA-SMAKSGSTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAGAAGAGCTCTCATTCAAAACTACTCCAAGATTGTAGGAGGGATATCAACGGAGGTTGGAGTCCAGCCCCATCGAACGCCACGAAAATATTCTGCTGGAATGTT
CGAGGGTTGTGGAATCCTCGAGCATTGTCATGAGATTAGAAGCAAAAATCCCCATATCGTTTTTATCACAAAAACTAAAAGCGGGTCAGCTAGAATGGAGAAAGTGAAAA
ATGATCTGAACTTTGATTGTGGCTTTTGTGTCTCTAATTATTGGGGGGGGGGGGATTTCAACGAAATCCTGTTTGCTGATGAAAAGAGAGGAAGAGCAGGTAGAGGCCAA
AACCTCATGGAGGCGTTCCGTTTGGCTTTGGACAAATGCAATCTAGCAGATCTGGTAGCTCCTAGAAACGTGTTCACTTGGATGAAAAGGGTGAGAGGAGGTACGACCAT
TGCAGAAAGACTTGATCGTTTCTTGGCAAACGACGAGTTTAGATCCTTGTTTAGAAATATTGGCATCAGTCACCTGAACAAGCATGGTTCGGACCACCATCCTATTGTGG
CTTCCATGGCTAAAAGTGGAAGTACTAAGGAAGTTTTTAAAAGTGAAGGGATAAAAGCCCTTTTCGCAGCGGAAACGTACAGAAAACCACACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAGAAGAGCTCTCATTCAAAACTACTCCAAGATTGTAGGAGGGATATCAACGGAGGTTGGAGTCCAGCCCCATCGAACGCCACGAAAATATTCTGCTGGAATGTT
CGAGGGTTGTGGAATCCTCGAGCATTGTCATGAGATTAGAAGCAAAAATCCCCATATCGTTTTTATCACAAAAACTAAAAGCGGGTCAGCTAGAATGGAGAAAGTGAAAA
ATGATCTGAACTTTGATTGTGGCTTTTGTGTCTCTAATTATTGGGGGGGGGGGGATTTCAACGAAATCCTGTTTGCTGATGAAAAGAGAGGAAGAGCAGGTAGAGGCCAA
AACCTCATGGAGGCGTTCCGTTTGGCTTTGGACAAATGCAATCTAGCAGATCTGGTAGCTCCTAGAAACGTGTTCACTTGGATGAAAAGGGTGAGAGGAGGTACGACCAT
TGCAGAAAGACTTGATCGTTTCTTGGCAAACGACGAGTTTAGATCCTTGTTTAGAAATATTGGCATCAGTCACCTGAACAAGCATGGTTCGGACCACCATCCTATTGTGG
CTTCCATGGCTAAAAGTGGAAGTACTAAGGAAGTTTTTAAAAGTGAAGGGATAAAAGCCCTTTTCGCAGCGGAAACGTACAGAAAACCACACTGA
Protein sequenceShow/hide protein sequence
MKRRALIQNYSKIVGGISTEVGVQPHRTPRKYSAGMFEGCGILEHCHEIRSKNPHIVFITKTKSGSARMEKVKNDLNFDCGFCVSNYWGGGDFNEILFADEKRGRAGRGQ
NLMEAFRLALDKCNLADLVAPRNVFTWMKRVRGGTTIAERLDRFLANDEFRSLFRNIGISHLNKHGSDHHPIVASMAKSGSTKEVFKSEGIKALFAAETYRKPH