; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000459 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000459
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr4:7861949..7863651
RNA-Seq ExpressionLag0000459
SyntenyLag0000459
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3483894.1 reverse transcriptase [Gossypium australe]1.1e-1337.33Show/hide
Query:  LKGLGNPRALRSLRHLVESNKPQM--------------RERRR-------------SLAALELLL---LDVGIESYSDGNIDTFVKDKD--RSWRFTGFY
        ++GLGNPR +  LR  ++++ PQM              R RRR             S   L L     + + ++S+S  +ID  V D++  + WRFTGFY
Subjt:  LKGLGNPRALRSLRHLVESNKPQM--------------RERRR-------------SLAALELLL---LDVGIESYSDGNIDTFVKDKD--RSWRFTGFY

Query:  GNPETEKRHHSWNLFDKLYDNDTLPWLIGGGFNEITSMDEKKGGAPRKKR
        G+P  + R  SWNL   L  N+ LPWL+ G FNEI    +KKGG PR++R
Subjt:  GNPETEKRHHSWNLFDKLYDNDTLPWLIGGGFNEITSMDEKKGGAPRKKR

KAF5477448.1 hypothetical protein F2P56_004088 [Juglans regia]7.8e-1540.48Show/hide
Query:  KGLGNPRALRSLRHLVESNKPQMRERRRS-----------LAALELLLLDVGIESYSDGNIDTFVKDKD-RSWRFTGFYGNPETEKRHHSWNLFDKLYDN
        +GLGNP  +R+LR L+    P +   + +           L+ L    L + ++SYS  +ID  VK  D R WRFTG YGNPE   R  +WNL   L+  
Subjt:  KGLGNPRALRSLRHLVESNKPQMRERRRS-----------LAALELLLLDVGIESYSDGNIDTFVKDKD-RSWRFTGFYGNPETEKRHHSWNLFDKLYDN

Query:  DTLPWLIGGGFNEITSMDEKKGGAPR
        + +PWL+GG FNE+  + EK GG PR
Subjt:  DTLPWLIGGGFNEITSMDEKKGGAPR

OMO64558.1 hypothetical protein CCACVL1_21676 [Corchorus capsularis]1.0e-1437.28Show/hide
Query:  AKTNSMSSKKWKRLAQC---EPMLQDEHEHLFSQKGKKHGRREQNEEEATKKLKGLGNPRALRSLRHLVESNKPQMRERRRSLAALELLLLDVGIESYSD
        +++NS+  +KWKR A+     P        +FS    K G   +  +   KK +  G   A  S+ +  ES             + E+  +DV I SYS 
Subjt:  AKTNSMSSKKWKRLAQC---EPMLQDEHEHLFSQKGKKHGRREQNEEEATKKLKGLGNPRALRSLRHLVESNKPQMRERRRSLAALELLLLDVGIESYSD

Query:  GNIDTFVKDKDRS--WRFTGFYGNPETEKRHHSWNLFDKLYDNDTLPWLIGGGFNEITSMDEKKGGAPR
         +ID  +K+   S  WRFTGFYGNP+T +R  SW L  +L+ ++++PW IGG FNEI S DEK GG PR
Subjt:  GNIDTFVKDKDRS--WRFTGFYGNPETEKRHHSWNLFDKLYDNDTLPWLIGGGFNEITSMDEKKGGAPR

OMO96399.1 reverse transcriptase [Corchorus capsularis]3.9e-1444.07Show/hide
Query:  KGLGNPRALRSLRHLVESNKPQMRERRRSLAALELLLLDVGIESYSDGNIDTFVKDK-DRSWRFTGFYGNPETEKRHHSWNLFDKLYDNDTLPWLIGGGF
        +GLG  RA+  L  LV+        R   LA L      + I S+S  +ID  V+   +R WR TGFYG PET +RH SW+L  +L +  TLPW+  G F
Subjt:  KGLGNPRALRSLRHLVESNKPQMRERRRSLAALELLLLDVGIESYSDGNIDTFVKDK-DRSWRFTGFYGNPETEKRHHSWNLFDKLYDNDTLPWLIGGGF

Query:  NEITSMDEKKGGAPRKKR
        NEI + DEK GG PR +R
Subjt:  NEITSMDEKKGGAPRKKR

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]1.1e-1643.45Show/hide
Query:  GLGNPRALRSLRHLVESNKPQM--------------RERRR-------SLAAL----ELLLL-----DVGIESYSDGNIDTFVKDKDRSWRFTGFYGNPE
        GLGNP   R+LR+LV  ++PQ+              R +R        S+A+      L+LL     +V I+S S G+ID+ + DK  SWRFTGFYGNP 
Subjt:  GLGNPRALRSLRHLVESNKPQM--------------RERRR-------SLAAL----ELLLL-----DVGIESYSDGNIDTFVKDKDRSWRFTGFYGNPE

Query:  TEKRHHSWNLFDKLYDNDTLPWLIGGGFNEITSMDEKKGGAPRKK
        T KR  SW L ++L     LPW+IGG FNEI SM EK GG  R +
Subjt:  TEKRHHSWNLFDKLYDNDTLPWLIGGGFNEITSMDEKKGGAPRKK

TrEMBL top hitse value%identityAlignment
A0A1R3H2G0 Uncharacterized protein4.9e-1537.28Show/hide
Query:  AKTNSMSSKKWKRLAQC---EPMLQDEHEHLFSQKGKKHGRREQNEEEATKKLKGLGNPRALRSLRHLVESNKPQMRERRRSLAALELLLLDVGIESYSD
        +++NS+  +KWKR A+     P        +FS    K G   +  +   KK +  G   A  S+ +  ES             + E+  +DV I SYS 
Subjt:  AKTNSMSSKKWKRLAQC---EPMLQDEHEHLFSQKGKKHGRREQNEEEATKKLKGLGNPRALRSLRHLVESNKPQMRERRRSLAALELLLLDVGIESYSD

Query:  GNIDTFVKDKDRS--WRFTGFYGNPETEKRHHSWNLFDKLYDNDTLPWLIGGGFNEITSMDEKKGGAPR
         +ID  +K+   S  WRFTGFYGNP+T +R  SW L  +L+ ++++PW IGG FNEI S DEK GG PR
Subjt:  GNIDTFVKDKDRS--WRFTGFYGNPETEKRHHSWNLFDKLYDNDTLPWLIGGGFNEITSMDEKKGGAPR

A0A1R3HKR2 Reverse transcriptase1.2e-1350.59Show/hide
Query:  LAALELLLLDVGIESYSDGNIDTFVKDKDRSWRFTGFYGNPETEKRHHSWNLFDKLYDNDTLPWLIGGGFNEITSMDEKKGGAPR
        LA L + +  V + SYS  +ID  +     SW FTGFYG PET  RH SW L   L     LPWL  G FNEI S+DEKKGG+ R
Subjt:  LAALELLLLDVGIESYSDGNIDTFVKDKDRSWRFTGFYGNPETEKRHHSWNLFDKLYDNDTLPWLIGGGFNEITSMDEKKGGAPR

A0A1R3JNE6 Reverse transcriptase1.9e-1444.07Show/hide
Query:  KGLGNPRALRSLRHLVESNKPQMRERRRSLAALELLLLDVGIESYSDGNIDTFVKDK-DRSWRFTGFYGNPETEKRHHSWNLFDKLYDNDTLPWLIGGGF
        +GLG  RA+  L  LV+        R   LA L      + I S+S  +ID  V+   +R WR TGFYG PET +RH SW+L  +L +  TLPW+  G F
Subjt:  KGLGNPRALRSLRHLVESNKPQMRERRRSLAALELLLLDVGIESYSDGNIDTFVKDK-DRSWRFTGFYGNPETEKRHHSWNLFDKLYDNDTLPWLIGGGF

Query:  NEITSMDEKKGGAPRKKR
        NEI + DEK GG PR +R
Subjt:  NEITSMDEKKGGAPRKKR

A0A5B6WS07 Reverse transcriptase5.5e-1437.33Show/hide
Query:  LKGLGNPRALRSLRHLVESNKPQM--------------RERRR-------------SLAALELLL---LDVGIESYSDGNIDTFVKDKD--RSWRFTGFY
        ++GLGNPR +  LR  ++++ PQM              R RRR             S   L L     + + ++S+S  +ID  V D++  + WRFTGFY
Subjt:  LKGLGNPRALRSLRHLVESNKPQM--------------RERRR-------------SLAALELLL---LDVGIESYSDGNIDTFVKDKD--RSWRFTGFY

Query:  GNPETEKRHHSWNLFDKLYDNDTLPWLIGGGFNEITSMDEKKGGAPRKKR
        G+P  + R  SWNL   L  N+ LPWL+ G FNEI    +KKGG PR++R
Subjt:  GNPETEKRHHSWNLFDKLYDNDTLPWLIGGGFNEITSMDEKKGGAPRKKR

A0A6J1DUG8 uncharacterized protein LOC1110241355.3e-1743.45Show/hide
Query:  GLGNPRALRSLRHLVESNKPQM--------------RERRR-------SLAAL----ELLLL-----DVGIESYSDGNIDTFVKDKDRSWRFTGFYGNPE
        GLGNP   R+LR+LV  ++PQ+              R +R        S+A+      L+LL     +V I+S S G+ID+ + DK  SWRFTGFYGNP 
Subjt:  GLGNPRALRSLRHLVESNKPQM--------------RERRR-------SLAAL----ELLLL-----DVGIESYSDGNIDTFVKDKDRSWRFTGFYGNPE

Query:  TEKRHHSWNLFDKLYDNDTLPWLIGGGFNEITSMDEKKGGAPRKK
        T KR  SW L ++L     LPW+IGG FNEI SM EK GG  R +
Subjt:  TEKRHHSWNLFDKLYDNDTLPWLIGGGFNEITSMDEKKGGAPRKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGTCGAGCAAGAATATACATGTCTGCAAATTTAAAAATAAAAAGGTGAAAAGAAGGGTAGTGGAAGGGGGACCATGGATATATGATAAAGCAATCATCCACTT
CGACGAGCTGAAAGGAAACAAGGCATCAAGTCATTGGAGTTCAGGTATGAAATACAGTATGGCTCTCGCAAACTCAATAGGAACTTTTGTGAAAATTAAGGAGCAGAGGA
AGTGTGGGCGTCTGGGTCATGTTATGAACGACCATGAGGAGGAGGCTGAAGAAGACGATGATGAGGGAACTCAGTATGGTCCCTGGCTAAGGGAGTCTTTCAACATAAAC
CCAACGAACAAAAACCAGAAAGAGGCAGCAAAACTAAGTGGGGAAGAAGAGAAGCACAAAAAGGAGTTAGAAAACAAAATGGAAAACTTAGCGAAGCAGGTGAGGGAAGT
AGTCGGAGTCAACGCCGGAGAAGAAAACACATCGGAATACAGAATCACGCACGACGGAAAGATGAAAATCGTTGGGGAAAAAGACAAAGTACAATCAATGCACAACCAGT
CAGTGACAGAAAGTACAGACAAAATAGTTGTTGAGTCTAAGCACCTGTCAGTTCAAGGAGTACGGAACATGGAACAAAAGGAAGAAAAGAGAGTACAAAGTCCGATATTC
GGTGGGGAAAGCGAAAAAGGAAAAGATGATCAGTGGGCCAAAAAGAAGGACCAAAGTCAACCCAGTACCATAAGAAGACAGGTATGCCCAGATAAAGATGTGGAAACCAA
AAGTGAAAAAAGAGAGAATACAGAAAATGGAATGGAAAAACAGAATGCAAAAACCAACTCCATGAGTTCTAAAAAATGGAAGAGGCTGGCTCAGTGTGAACCCATGCTAC
AGGACGAACATGAACACCTTTTCAGCCAAAAAGGAAAGAAGCATGGGAGAAGAGAACAAAATGAAGAGGAAGCAACAAAAAAACTGAAAGGACTCGGGAACCCCCGGGCG
CTTCGATCGCTTCGCCACTTGGTGGAAAGCAACAAACCCCAGATGAGGGAAAGGAGGCGATCTCTTGCTGCTTTGGAGCTCCTCCTCCTGGATGTAGGAATCGAGTCCTA
TTCTGATGGGAATATAGATACTTTTGTAAAGGACAAGGATAGATCATGGAGGTTTACTGGATTCTACGGTAACCCTGAGACGGAAAAAAGACATCATTCGTGGAATTTGT
TTGACAAGCTGTATGATAATGATACGCTCCCTTGGCTCATCGGAGGGGGTTTCAATGAGATCACATCCATGGATGAAAAGAAAGGGGGTGCTCCTAGAAAGAAGCGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGTCGAGCAAGAATATACATGTCTGCAAATTTAAAAATAAAAAGGTGAAAAGAAGGGTAGTGGAAGGGGGACCATGGATATATGATAAAGCAATCATCCACTT
CGACGAGCTGAAAGGAAACAAGGCATCAAGTCATTGGAGTTCAGGTATGAAATACAGTATGGCTCTCGCAAACTCAATAGGAACTTTTGTGAAAATTAAGGAGCAGAGGA
AGTGTGGGCGTCTGGGTCATGTTATGAACGACCATGAGGAGGAGGCTGAAGAAGACGATGATGAGGGAACTCAGTATGGTCCCTGGCTAAGGGAGTCTTTCAACATAAAC
CCAACGAACAAAAACCAGAAAGAGGCAGCAAAACTAAGTGGGGAAGAAGAGAAGCACAAAAAGGAGTTAGAAAACAAAATGGAAAACTTAGCGAAGCAGGTGAGGGAAGT
AGTCGGAGTCAACGCCGGAGAAGAAAACACATCGGAATACAGAATCACGCACGACGGAAAGATGAAAATCGTTGGGGAAAAAGACAAAGTACAATCAATGCACAACCAGT
CAGTGACAGAAAGTACAGACAAAATAGTTGTTGAGTCTAAGCACCTGTCAGTTCAAGGAGTACGGAACATGGAACAAAAGGAAGAAAAGAGAGTACAAAGTCCGATATTC
GGTGGGGAAAGCGAAAAAGGAAAAGATGATCAGTGGGCCAAAAAGAAGGACCAAAGTCAACCCAGTACCATAAGAAGACAGGTATGCCCAGATAAAGATGTGGAAACCAA
AAGTGAAAAAAGAGAGAATACAGAAAATGGAATGGAAAAACAGAATGCAAAAACCAACTCCATGAGTTCTAAAAAATGGAAGAGGCTGGCTCAGTGTGAACCCATGCTAC
AGGACGAACATGAACACCTTTTCAGCCAAAAAGGAAAGAAGCATGGGAGAAGAGAACAAAATGAAGAGGAAGCAACAAAAAAACTGAAAGGACTCGGGAACCCCCGGGCG
CTTCGATCGCTTCGCCACTTGGTGGAAAGCAACAAACCCCAGATGAGGGAAAGGAGGCGATCTCTTGCTGCTTTGGAGCTCCTCCTCCTGGATGTAGGAATCGAGTCCTA
TTCTGATGGGAATATAGATACTTTTGTAAAGGACAAGGATAGATCATGGAGGTTTACTGGATTCTACGGTAACCCTGAGACGGAAAAAAGACATCATTCGTGGAATTTGT
TTGACAAGCTGTATGATAATGATACGCTCCCTTGGCTCATCGGAGGGGGTTTCAATGAGATCACATCCATGGATGAAAAGAAAGGGGGTGCTCCTAGAAAGAAGCGGTAG
Protein sequenceShow/hide protein sequence
MKKSSKNIHVCKFKNKKVKRRVVEGGPWIYDKAIIHFDELKGNKASSHWSSGMKYSMALANSIGTFVKIKEQRKCGRLGHVMNDHEEEAEEDDDEGTQYGPWLRESFNIN
PTNKNQKEAAKLSGEEEKHKKELENKMENLAKQVREVVGVNAGEENTSEYRITHDGKMKIVGEKDKVQSMHNQSVTESTDKIVVESKHLSVQGVRNMEQKEEKRVQSPIF
GGESEKGKDDQWAKKKDQSQPSTIRRQVCPDKDVETKSEKRENTENGMEKQNAKTNSMSSKKWKRLAQCEPMLQDEHEHLFSQKGKKHGRREQNEEEATKKLKGLGNPRA
LRSLRHLVESNKPQMRERRRSLAALELLLLDVGIESYSDGNIDTFVKDKDRSWRFTGFYGNPETEKRHHSWNLFDKLYDNDTLPWLIGGGFNEITSMDEKKGGAPRKKR