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Lag0000462 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000462
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCOBRA-like protein
Genome locationchr4:7893385..7894136
RNA-Seq ExpressionLag0000462
SyntenyLag0000462
Gene Ontology termsGO:0010215 - cellulose microfibril organization (biological process)
GO:0052324 - plant-type cell wall cellulose biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0046658 - anchored component of plasma membrane (cellular component)
InterPro domainsIPR006918 - COBRA, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018201.1 Protein COBRA [Cucurbita argyrosperma subsp. argyrosperma]1.4e-4270.54Show/hide
Query:  MPRTNANKLICRANSPYLASVTDSSSSKNNLAPLVQYDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDA
        M  TN N ++   N   L  +   +    N    +  DTAILWGVKFYNDLLMQAGPLGNVQTELLF+KDQSTFTFDKGWAFPRRIYFNGDNCVMPPP+A
Subjt:  MPRTNANKLICRANSPYLASVTDSSSSKNNLAPLVQYDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDA

Query:  YPYLPNAGSKQGVSLCTMLLLISMTLLSF
        YPYLPN GSK GVS+ TMLLLIS+T+LSF
Subjt:  YPYLPNAGSKQGVSLCTMLLLISMTLLSF

XP_004137135.1 COBRA-like protein 1 [Cucumis sativus]5.0e-4354.87Show/hide
Query:  NANKLICRANSPYLASVTDS-SSSKNNLAPLVQ-------------------------------------------------------------------
        NA +     NSPYLASV +S SSSKNNL PLVQ                                                                   
Subjt:  NANKLICRANSPYLASVTDS-SSSKNNLAPLVQ-------------------------------------------------------------------

Query:  --YDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGVSLCTMLLLISMTLLSF
           DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQS FTFDKGWAFPRRIYFNGDNCVMPPP+AYP+LPN GSKQGVS+ TMLLLIS+TLLSF
Subjt:  --YDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGVSLCTMLLLISMTLLSF

XP_022980615.1 protein COBRA-like [Cucurbita maxima]1.9e-4270.54Show/hide
Query:  MPRTNANKLICRANSPYLASVTDSSSSKNNLAPLVQYDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDA
        M  TN N ++   N   L  +   +    N    +  DTAILWGVKFYNDLLMQAGPLGNVQTELLF+KDQSTFTFDKGWAFPRRIYFNGDNCVMPPP+A
Subjt:  MPRTNANKLICRANSPYLASVTDSSSSKNNLAPLVQYDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDA

Query:  YPYLPNAGSKQGVSLCTMLLLISMTLLSF
        YPYLPN GSK GV++ TMLLLIS+TLLSF
Subjt:  YPYLPNAGSKQGVSLCTMLLLISMTLLSF

XP_023526993.1 protein COBRA-like [Cucurbita pepo subsp. pepo]8.5e-4371.32Show/hide
Query:  MPRTNANKLICRANSPYLASVTDSSSSKNNLAPLVQYDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDA
        M  TN N ++   N   L  +   +    N    +  DTAILWGVKFYNDLLMQAGPLGNVQTELLF+KDQSTFTFDKGWAFPRRIYFNGDNCVMPPP+A
Subjt:  MPRTNANKLICRANSPYLASVTDSSSSKNNLAPLVQYDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDA

Query:  YPYLPNAGSKQGVSLCTMLLLISMTLLSF
        YPYLPN GSK GVS+ TMLLLIS+TLLSF
Subjt:  YPYLPNAGSKQGVSLCTMLLLISMTLLSF

XP_038905211.1 protein COBRA-like [Benincasa hispida]2.2e-4354.87Show/hide
Query:  NANKLICRANSPYLAS-VTDSSSSKNNLAPLVQ-------------------------------------------------------------------
        NA +     NSP+LAS VT +SSSKNNL PLVQ                                                                   
Subjt:  NANKLICRANSPYLAS-VTDSSSSKNNLAPLVQ-------------------------------------------------------------------

Query:  --YDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGVSLCTMLLLISMTLLSF
           DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPP+AYPYLPN GSKQGVS+ TMLLL S+TLLSF
Subjt:  --YDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGVSLCTMLLLISMTLLSF

TrEMBL top hitse value%identityAlignment
A0A0A0KW50 COBRA-like protein2.4e-4354.87Show/hide
Query:  NANKLICRANSPYLASVTDS-SSSKNNLAPLVQ-------------------------------------------------------------------
        NA +     NSPYLASV +S SSSKNNL PLVQ                                                                   
Subjt:  NANKLICRANSPYLASVTDS-SSSKNNLAPLVQ-------------------------------------------------------------------

Query:  --YDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGVSLCTMLLLISMTLLSF
           DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQS FTFDKGWAFPRRIYFNGDNCVMPPP+AYP+LPN GSKQGVS+ TMLLLIS+TLLSF
Subjt:  --YDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGVSLCTMLLLISMTLLSF

A0A5A7TQP7 COBRA-like protein2.0e-4255.91Show/hide
Query:  NSPYLASVTDS-SSSKNNLAPLVQ---------------------------------------------------------------------YDTAILW
        NSPYLASV +S SSSKNNL PLVQ                                                                      DTAILW
Subjt:  NSPYLASVTDS-SSSKNNLAPLVQ---------------------------------------------------------------------YDTAILW

Query:  GVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGVSLCTMLLLISMTLLSF
        GVKFYNDLLMQAGPLGNVQTELLFRKDQS FTFDKGWAFPRRIYFNGDNCVMPPP+AYPYLPN GSK+GVS+ TMLLLIS+ LLSF
Subjt:  GVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGVSLCTMLLLISMTLLSF

A0A6J1DLW8 COBRA-like protein1.2e-4256.68Show/hide
Query:  ANSPYLAS-VTDSSSSKNNLAPLVQ---------------------------------------------------------------------YDTAIL
        AN P+LAS VT SSSSKNNLAPLVQ                                                                      DTAIL
Subjt:  ANSPYLAS-VTDSSSSKNNLAPLVQ---------------------------------------------------------------------YDTAIL

Query:  WGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGVSLCTMLLLISMTLLSF
        WGVKFYNDLLMQAGPLGNVQTELLFRKDQS FTFDKGWAFPRRIYFNGDNCVMPPPDAYP+LPNAGSK+GVSL T LLL+S+TLLSF
Subjt:  WGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGVSLCTMLLLISMTLLSF

A0A6J1GUP9 protein COBRA-like2.7e-4269.77Show/hide
Query:  MPRTNANKLICRANSPYLASVTDSSSSKNNLAPLVQYDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDA
        M  TN N ++   N   L  +   +    N    +  DTAILWGVKFYNDLLMQAGPLGNVQTELLF+KDQSTFTFDKGWAFPRRIYFNGDNCVMPPP+A
Subjt:  MPRTNANKLICRANSPYLASVTDSSSSKNNLAPLVQYDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDA

Query:  YPYLPNAGSKQGVSLCTMLLLISMTLLSF
        YPYLPN GSK GVS+  MLLLIS+T+LSF
Subjt:  YPYLPNAGSKQGVSLCTMLLLISMTLLSF

A0A6J1IWY0 COBRA-like protein9.1e-4370.54Show/hide
Query:  MPRTNANKLICRANSPYLASVTDSSSSKNNLAPLVQYDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDA
        M  TN N ++   N   L  +   +    N    +  DTAILWGVKFYNDLLMQAGPLGNVQTELLF+KDQSTFTFDKGWAFPRRIYFNGDNCVMPPP+A
Subjt:  MPRTNANKLICRANSPYLASVTDSSSSKNNLAPLVQYDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDA

Query:  YPYLPNAGSKQGVSLCTMLLLISMTLLSF
        YPYLPN GSK GV++ TMLLLIS+TLLSF
Subjt:  YPYLPNAGSKQGVSLCTMLLLISMTLLSF

SwissProt top hitse value%identityAlignment
Q60E70 COBRA-like protein 32.6e-3464.22Show/hide
Query:  NLAPLVQY-----DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAG--SKQGVSLCTMLL-L
        N  PL  Y     DTA+ WGVKFYNDLLMQAGPLGN Q+ELL RKD   FTFDKGWAFP R+YFNGDNCVMPPPDAYP+LPNA   +KQ ++L  ++  +
Subjt:  NLAPLVQY-----DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAG--SKQGVSLCTMLL-L

Query:  ISMTLLSFA
        +  TLL++A
Subjt:  ISMTLLSFA

Q6Z4G8 COBRA-like protein 17.0e-3267.39Show/hide
Query:  DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGVSLCTMLLLISMTLLSF
        DTA+LWG+K+YNDLLM AGP GNVQ+ELLF+KD  +FTF+KGWAFPRR+YFNGDNCVMPPPDAYP+LPNA ++   S+    + I  T L+F
Subjt:  DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGVSLCTMLLLISMTLLSF

Q8L8Q7 COBRA-like protein 24.1e-3262.75Show/hide
Query:  NLAPLVQY----DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGVSLCTMLLLISMT
        N  PL  Y    DTA+LWG+KFYND L QAGP+GNVQ+ELLF+K+   FTF+KGWAFPRRIYFNGDNCVMPPPD+YP+LPNA      S   +LL+  ++
Subjt:  NLAPLVQY----DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGVSLCTMLLLISMT

Query:  LL
        +L
Subjt:  LL

Q94KT8 Protein COBRA1.4e-3560.83Show/hide
Query:  ANSPYLASVTD-SSSSKNNLAPLVQY-DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSK
        A  P L ++T   S +  +L P     DTA+LWGVKFYND L +AGPLGNVQ+E+LFRKDQSTFTF+KGWAFPRRIYFNGDNCVMPPPD+YP+LPN GS+
Subjt:  ANSPYLASVTD-SSSSKNNLAPLVQY-DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSK

Query:  QGVSLCTMLLLISMTLLSFA
           S    +LL  +    F+
Subjt:  QGVSLCTMLLLISMTLLSFA

Q9SRT7 COBRA-like protein 11.5e-3466.99Show/hide
Query:  NLAPLVQY----DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGV-SLCTMLLLISM
        N  PL  Y    DT ILWG+KFYNDLLMQAGP GNVQ+ELLF+K+ S FTF+KGWAFPRRIYFNGDNCVMPPPD+YP+LPN GS + V SL   + L+ +
Subjt:  NLAPLVQY----DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGV-SLCTMLLLISM

Query:  TLL
          L
Subjt:  TLL

Arabidopsis top hitse value%identityAlignment
AT1G09790.1 COBRA-like protein 6 precursor1.4e-2453Show/hide
Query:  DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGVSLCTMLLLISMTLLSFAIHLRNIL
        DT + WGV+FYND+L+Q G +GNVQTELL +KD   FTF +GWAFPRRI FNGD CVMP PD +P LP    K   S  +   +IS   + F   L ++L
Subjt:  DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGVSLCTMLLLISMTLLSFAIHLRNIL

AT3G02210.1 COBRA-like protein 1 precursor1.1e-3566.99Show/hide
Query:  NLAPLVQY----DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGV-SLCTMLLLISM
        N  PL  Y    DT ILWG+KFYNDLLMQAGP GNVQ+ELLF+K+ S FTF+KGWAFPRRIYFNGDNCVMPPPD+YP+LPN GS + V SL   + L+ +
Subjt:  NLAPLVQY----DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGV-SLCTMLLLISM

Query:  TLL
          L
Subjt:  TLL

AT3G29810.1 COBRA-like protein 2 precursor2.9e-3362.75Show/hide
Query:  NLAPLVQY----DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGVSLCTMLLLISMT
        N  PL  Y    DTA+LWG+KFYND L QAGP+GNVQ+ELLF+K+   FTF+KGWAFPRRIYFNGDNCVMPPPD+YP+LPNA      S   +LL+  ++
Subjt:  NLAPLVQY----DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSKQGVSLCTMLLLISMT

Query:  LL
        +L
Subjt:  LL

AT5G15630.1 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family2.5e-2962.79Show/hide
Query:  DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNA--GSKQGVSLCTMLLL
        DT + +G KFYNDLLM+AGP GNVQ+E+L +KDQ TFTF +GWAFPR++YFNGD C++PPPD+YP+LPN+  G+    SL  +LLL
Subjt:  DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNA--GSKQGVSLCTMLLL

AT5G60920.1 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family9.6e-3760.83Show/hide
Query:  ANSPYLASVTD-SSSSKNNLAPLVQY-DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSK
        A  P L ++T   S +  +L P     DTA+LWGVKFYND L +AGPLGNVQ+E+LFRKDQSTFTF+KGWAFPRRIYFNGDNCVMPPPD+YP+LPN GS+
Subjt:  ANSPYLASVTD-SSSSKNNLAPLVQY-DTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSK

Query:  QGVSLCTMLLLISMTLLSFA
           S    +LL  +    F+
Subjt:  QGVSLCTMLLLISMTLLSFA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGGACTAATGCCAACAAGCTTATTTGCAGGGCAAATTCTCCATATTTAGCCTCTGTTACCGATTCTAGTTCTAGCAAGAACAATTTGGCTCCTCTGGTTCAGTA
TGATACTGCAATCCTGTGGGGAGTCAAGTTCTACAATGATTTGCTCATGCAAGCAGGCCCTCTTGGGAATGTGCAGACAGAGTTACTTTTCAGGAAGGACCAATCGACTT
TTACATTTGATAAAGGCTGGGCTTTCCCTCGAAGGATCTATTTCAATGGCGACAATTGTGTCATGCCACCTCCAGATGCCTATCCCTACTTACCAAACGCTGGTTCTAAG
CAAGGTGTTTCGTTGTGTACTATGCTATTGCTGATTTCCATGACTCTCTTGTCCTTTGCCATTCATTTGCGTAATATTCTTCCTGGTATGCTTGAGTCATTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCGGACTAATGCCAACAAGCTTATTTGCAGGGCAAATTCTCCATATTTAGCCTCTGTTACCGATTCTAGTTCTAGCAAGAACAATTTGGCTCCTCTGGTTCAGTA
TGATACTGCAATCCTGTGGGGAGTCAAGTTCTACAATGATTTGCTCATGCAAGCAGGCCCTCTTGGGAATGTGCAGACAGAGTTACTTTTCAGGAAGGACCAATCGACTT
TTACATTTGATAAAGGCTGGGCTTTCCCTCGAAGGATCTATTTCAATGGCGACAATTGTGTCATGCCACCTCCAGATGCCTATCCCTACTTACCAAACGCTGGTTCTAAG
CAAGGTGTTTCGTTGTGTACTATGCTATTGCTGATTTCCATGACTCTCTTGTCCTTTGCCATTCATTTGCGTAATATTCTTCCTGGTATGCTTGAGTCATTCTGA
Protein sequenceShow/hide protein sequence
MPRTNANKLICRANSPYLASVTDSSSSKNNLAPLVQYDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNAGSK
QGVSLCTMLLLISMTLLSFAIHLRNILPGMLESF