; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000466 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000466
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNA-dependent RNA polymerase
Genome locationchr4:7976843..7978399
RNA-Seq ExpressionLag0000466
SyntenyLag0000466
Gene Ontology termsGO:0016740 - transferase activity (molecular function)
InterPro domainsIPR008686 - RNA-dependent RNA polymerase, mitoviral


Homology Show/hide homology
GenBank top hitse value%identityAlignment
DAB41749.1 TPA_inf: RNA-dependent RNA polymerase [Humulus lupulus mitovirus 1]1.3e-3653.01Show/hide
Query:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVG--ERNLSPISCKALLVTRS
        W  FALSHHY+VWLAA R  P+R  PF  YALLGDDIVIADK VA  Y+ ILD LGV+IS  KS++S  GALEF KQ+WV   ++NLSP++ KA+LV+RS
Subjt:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVG--ERNLSPISCKALLVTRS

Query:  VIGLAALASKYSM-EYSSLIRLAGGGYRVLGNMERPR-GKRWLRLRVISDRLKWRIMDDLDRWLGG
        ++GL+ LA KY +   S L+R+AG G+RV  +++    GK+W RL +++ +   R    L  WL G
Subjt:  VIGLAALASKYSM-EYSSLIRLAGGGYRVLGNMERPR-GKRWLRLRVISDRLKWRIMDDLDRWLGG

KAG6466150.1 hypothetical protein ZIOFF_076061 [Zingiber officinale]1.3e-3653.94Show/hide
Query:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVG--ERNLSPISCKALLVTRS
        W  F+LSHHY+VWLAA  A P    PF  YALLGDDIVIAD+ VA  Y+ +L+ L VSIS  KS+ S  GA+EF KQ+WV     NL+P+S KA+L + S
Subjt:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVG--ERNLSPISCKALLVTRS

Query:  VIGLAALASKYSMEYSSLIRLAGGGYRVLGN-MERPRGKRWLRLRVISDRLKWRIMDDLDRWLGG
        +IGL  LA KY +  S LIRLAG GYRV G  + R   +RW RLRV++D+        LD WLGG
Subjt:  VIGLAALASKYSMEYSSLIRLAGGGYRVLGN-MERPRGKRWLRLRVISDRLKWRIMDDLDRWLGG

KAG6467635.1 hypothetical protein ZIOFF_074518 [Zingiber officinale]6.0e-3755.49Show/hide
Query:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVGE--RNLSPISCKALLVTRS
        W  F+LSHHY+VWLAA    P R  PF  YALLGDDIVIAD+ VA  YQ +LD L VSIS  KS+ S  GALEF KQ+W+ +   NL+P+S KA+L + S
Subjt:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVGE--RNLSPISCKALLVTRS

Query:  VIGLAALASKYSMEYSSLIRLAGGGYRVLGNMERPR-GKRWLRLRVISDRLKWRIMDDLDRWLG
        +IGL  LA KY++  S L RLAG GYRV G +   R  +RW RLRV+SDR        LD WLG
Subjt:  VIGLAALASKYSMEYSSLIRLAGGGYRVLGNMERPR-GKRWLRLRVISDRLKWRIMDDLDRWLG

KAG6467636.1 hypothetical protein ZIOFF_074505 [Zingiber officinale]1.3e-3653.94Show/hide
Query:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVG--ERNLSPISCKALLVTRS
        W  F+LSHHY+VWLAA  A P    PF  YALLGDDIVIAD+ VA  Y+ +L+ L VSIS  KS+ S  GA+EF KQ+WV     NL+P+S KA+L + S
Subjt:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVG--ERNLSPISCKALLVTRS

Query:  VIGLAALASKYSMEYSSLIRLAGGGYRVLGN-MERPRGKRWLRLRVISDRLKWRIMDDLDRWLGG
        +IGL  LA KY +  S LIRLAG GYRV G  + R   +RW RLRV++D+        LD WLGG
Subjt:  VIGLAALASKYSMEYSSLIRLAGGGYRVLGN-MERPRGKRWLRLRVISDRLKWRIMDDLDRWLGG

XP_042453255.1 uncharacterized mitochondrial protein AtMg01110-like [Zingiber officinale]1.3e-3653.94Show/hide
Query:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVG--ERNLSPISCKALLVTRS
        W  F+LSHHY+VWLAA  A P    PF  YALLGDDIVIAD+ VA  Y+ +L+ L VSIS  KS+ S  GA+EF KQ+WV     NL+P+S KA+L + S
Subjt:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVG--ERNLSPISCKALLVTRS

Query:  VIGLAALASKYSMEYSSLIRLAGGGYRVLGN-MERPRGKRWLRLRVISDRLKWRIMDDLDRWLGG
        +IGL  LA KY +  S LIRLAG GYRV G  + R   +RW RLRV++D+        LD WLGG
Subjt:  VIGLAALASKYSMEYSSLIRLAGGGYRVLGN-MERPRGKRWLRLRVISDRLKWRIMDDLDRWLGG

TrEMBL top hitse value%identityAlignment
A0A2Z6JHF7 RNA-dependent RNA polymerase6.6e-3449.69Show/hide
Query:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVGERNLSPISCKALLVTRSVI
        W  F+L+HH++VWLAA R  PNR  PF  YALLGDDIVIA+KEVAH Y+  LD L V IS  KS+ S  GA EF KQ+WVG  NLSP+S KA+L + SV 
Subjt:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVGERNLSPISCKALLVTRSVI

Query:  GLAALASKYSMEYSSLIRLAGGGYRVLGNMERP-RGKRWLRLRVISDR-LKWRIMDDLDRWLG
        G+  LA KY +   + ++LAG GYRV   M+ P    R+ R+  +  + L   +   L+ W+G
Subjt:  GLAALASKYSMEYSSLIRLAGGGYRVLGNMERP-RGKRWLRLRVISDR-LKWRIMDDLDRWLG

A0A2Z6JNH2 RNA-dependent RNA polymerase1.3e-3246.63Show/hide
Query:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYW--VGERNLSPISCKALLVTRS
        W  FALSHHY+VWLAA +  P R +PF  YALLGDDI+IAD+EV   Y   L+ LGV+IS  KS++S  G+LEF K++W  + + +LSP+S K+LL  +S
Subjt:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYW--VGERNLSPISCKALLVTRS

Query:  VIGLAALASKYSMEYSSLIRLAGGGYRVLGNMERPRGKRWLRLRVISDRLKWRIMDDLDRWLG
         IGL  +  KY ++ S+L RLAG GYRV   +   + KRW R++ ++ +        L+ W+G
Subjt:  VIGLAALASKYSMEYSSLIRLAGGGYRVLGNMERPRGKRWLRLRVISDRLKWRIMDDLDRWLG

A0A2Z6JQL1 RNA-dependent RNA polymerase1.3e-3246.63Show/hide
Query:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYW--VGERNLSPISCKALLVTRS
        W  FALSHHY+VWLAA +  P R +PF  YALLGDDI+IAD+EV   Y   L+ LGV+IS  KS++S  G+LEF K++W  + + +LSP+S K+LL  +S
Subjt:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYW--VGERNLSPISCKALLVTRS

Query:  VIGLAALASKYSMEYSSLIRLAGGGYRVLGNMERPRGKRWLRLRVISDRLKWRIMDDLDRWLG
         IGL  +  KY ++ S+L RLAG GYRV   +   + KRW R++ ++ +        L+ W+G
Subjt:  VIGLAALASKYSMEYSSLIRLAGGGYRVLGNMERPRGKRWLRLRVISDRLKWRIMDDLDRWLG

A0A2Z6JSM6 RNA-dependent RNA polymerase6.4e-3753.01Show/hide
Query:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVG--ERNLSPISCKALLVTRS
        W  FALSHHY+VWLAA R  P+R  PF  YALLGDDIVIADK VA  Y+ ILD LGV+IS  KS++S  GALEF KQ+WV   ++NLSP++ KA+LV+RS
Subjt:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVG--ERNLSPISCKALLVTRS

Query:  VIGLAALASKYSM-EYSSLIRLAGGGYRVLGNMERPR-GKRWLRLRVISDRLKWRIMDDLDRWLGG
        ++GL+ LA KY +   S L+R+AG G+RV  +++    GK+W RL +++ +   R    L  WL G
Subjt:  VIGLAALASKYSM-EYSSLIRLAGGGYRVLGNMERPR-GKRWLRLRVISDRLKWRIMDDLDRWLGG

A0A7D9MX27 RNA-dependent RNA polymerase9.6e-3348.78Show/hide
Query:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVG--ERNLSPISCKALLVTRS
        W  FALSHHY++WLAA +A P+R  PF  YA+LGDD+VI D  VA+HY+ +L+ LGV+IS +KSL+S  GALEF K++WV   + +LSPIS KAL+V+R+
Subjt:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVG--ERNLSPISCKALLVTRS

Query:  VIGLAALASKYSMEYSSLI-RLAGGGYRVLGNMERPRGKRWLRLRVISDRLKWRIMDDLDRWLG
         IG+A LA +Y++   S+I RL G GYRV   +   +   W RL+ +  +        L+ WLG
Subjt:  VIGLAALASKYSMEYSSLI-RLAGGGYRVLGNMERPRGKRWLRLRVISDRLKWRIMDDLDRWLG

SwissProt top hitse value%identityAlignment
P92543 Uncharacterized mitochondrial protein AtMg011102.3e-3153.38Show/hide
Query:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVG--ERNLSPISCKALLVTRS
        W  FALSHH +VWLAA RA P++ +PF  YALLGDDIVIAD+ VA  Y+ +LDAL V IS  KS+VS  G LEF K++WV    ++LSP+S KA+L +  
Subjt:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVG--ERNLSPISCKALLVTRS

Query:  VIGLAALASKYSMEYSSLIRLAGGGYRVLGNME
        ++G   LA KY +   + +RL   GYRVLG M+
Subjt:  VIGLAALASKYSMEYSSLIRLAGGGYRVLGNME

P92567 Uncharacterized mitochondrial protein AtMg014102.0e-1154.55Show/hide
Query:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLV
        W  FALSHH +VW  A++  P     F++YA+LGDD+VIAD+EVA  Y+  L  LGV IS QKSL+
Subjt:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLV

Q33339 RNA-directed RNA polymerase1.3e-0544.44Show/hide
Query:  ALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVS
        AL+HH +V +AA  +       F+ Y +LGDDIVIA   VA  Y  +++ LG+SIS+ KS++S
Subjt:  ALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVS

Arabidopsis top hitse value%identityAlignment
AT2G07749.1 Mitovirus RNA-dependent RNA polymerase1.6e-3253.38Show/hide
Query:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVG--ERNLSPISCKALLVTRS
        W  FALSHH +VWLAA RA P++ +PF  YALLGDDIVIAD+ VA  Y+ +LDAL V IS  KS+VS  G LEF K++WV    ++LSP+S KA+L +  
Subjt:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVG--ERNLSPISCKALLVTRS

Query:  VIGLAALASKYSMEYSSLIRLAGGGYRVLGNME
        ++G   LA KY +   + +RL   GYRVLG M+
Subjt:  VIGLAALASKYSMEYSSLIRLAGGGYRVLGNME

ATMG01110.1 Mitovirus RNA-dependent RNA polymerase1.6e-3253.38Show/hide
Query:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVG--ERNLSPISCKALLVTRS
        W  FALSHH +VWLAA RA P++ +PF  YALLGDDIVIAD+ VA  Y+ +LDAL V IS  KS+VS  G LEF K++WV    ++LSP+S KA+L +  
Subjt:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVG--ERNLSPISCKALLVTRS

Query:  VIGLAALASKYSMEYSSLIRLAGGGYRVLGNME
        ++G   LA KY +   + +RL   GYRVLG M+
Subjt:  VIGLAALASKYSMEYSSLIRLAGGGYRVLGNME

ATMG01410.1 open reading frame 2041.4e-1254.55Show/hide
Query:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLV
        W  FALSHH +VW  A++  P     F++YA+LGDD+VIAD+EVA  Y+  L  LGV IS QKSL+
Subjt:  WRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAATTCCAAAAACCAGCGAGAGGTTCCCCACTCTTCTTTGATCCGTCTTAGGGCCGAGTGGCGGCCGTTTGCTTTATCCCATCACTATGTGGTGTGGTTGGCTGC
AAGGCGGGCCTGTCCAAACAGGGTCAAGCCATTCTCTGCTTATGCCTTACTCGGGGATGACATTGTCATTGCCGATAAGGAGGTAGCCCATCACTACCAAGTCATTTTGG
ATGCACTTGGTGTTTCTATTTCAGCCCAGAAATCTCTGGTGTCTTATTTAGGGGCATTAGAGTTTCCCAAGCAGTATTGGGTCGGAGAGAGAAATCTCTCCCCCATTTCC
TGTAAGGCGCTCCTTGTGACTAGATCAGTAATCGGTCTTGCTGCTTTAGCCTCAAAGTATTCAATGGAATATAGTTCATTGATACGTTTGGCGGGTGGAGGGTACCGGGT
ACTGGGTAACATGGAACGCCCTCGTGGAAAACGATGGTTGCGTTTACGTGTTATTAGTGATCGGTTAAAGTGGAGGATAATGGATGACCTCGACAGGTGGTTAGGAGGAA
CCTCGTCGGAATCAATGGGCAAGCGGTGGCGACGAGGTGCGGCGGTGAGCGGCGTGAGCGGCGGCGGCAAGCGATGGCAGTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAATTCCAAAAACCAGCGAGAGGTTCCCCACTCTTCTTTGATCCGTCTTAGGGCCGAGTGGCGGCCGTTTGCTTTATCCCATCACTATGTGGTGTGGTTGGCTGC
AAGGCGGGCCTGTCCAAACAGGGTCAAGCCATTCTCTGCTTATGCCTTACTCGGGGATGACATTGTCATTGCCGATAAGGAGGTAGCCCATCACTACCAAGTCATTTTGG
ATGCACTTGGTGTTTCTATTTCAGCCCAGAAATCTCTGGTGTCTTATTTAGGGGCATTAGAGTTTCCCAAGCAGTATTGGGTCGGAGAGAGAAATCTCTCCCCCATTTCC
TGTAAGGCGCTCCTTGTGACTAGATCAGTAATCGGTCTTGCTGCTTTAGCCTCAAAGTATTCAATGGAATATAGTTCATTGATACGTTTGGCGGGTGGAGGGTACCGGGT
ACTGGGTAACATGGAACGCCCTCGTGGAAAACGATGGTTGCGTTTACGTGTTATTAGTGATCGGTTAAAGTGGAGGATAATGGATGACCTCGACAGGTGGTTAGGAGGAA
CCTCGTCGGAATCAATGGGCAAGCGGTGGCGACGAGGTGCGGCGGTGAGCGGCGTGAGCGGCGGCGGCAAGCGATGGCAGTGGTGA
Protein sequenceShow/hide protein sequence
MSNSKNQREVPHSSLIRLRAEWRPFALSHHYVVWLAARRACPNRVKPFSAYALLGDDIVIADKEVAHHYQVILDALGVSISAQKSLVSYLGALEFPKQYWVGERNLSPIS
CKALLVTRSVIGLAALASKYSMEYSSLIRLAGGGYRVLGNMERPRGKRWLRLRVISDRLKWRIMDDLDRWLGGTSSESMGKRWRRGAAVSGVSGGGKRWQW