; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000473 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000473
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr4:8067396..8069602
RNA-Seq ExpressionLag0000473
SyntenyLag0000473
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]6.6e-8371.49Show/hide
Query:  AHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTYLEPESIDSWEELKREFLNRFYSTRRTVSMFELTNTKLRKGELVVNYINRWRAMSLDCKDRLTELS
        AHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYT LEPESIDSWE+L+R+FLNRFYSTRR VSM ELT TK RKGE V++YINRWRA+SLDCKDRLTELS
Subjt:  AHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTYLEPESIDSWEELKREFLNRFYSTRRTVSMFELTNTKLRKGELVVNYINRWRAMSLDCKDRLTELS

Query:  SVEMCIQGMHWELLYILKGIKPCTFEELATRTHNMELSIASRENQDLLLPNMRKEGRNDKET-------IEESMVVNTT----LPKSSSREKRQTNG-TH
        +VEMC QGMHW LLYIL+GIKP TFEELATR H+MELSIA+R N DLL+P +RKE +  K T        +E+MVV+TT    + K    EKRQ  G   
Subjt:  SVEMCIQGMHWELLYILKGIKPCTFEELATRTHNMELSIASRENQDLLLPNMRKEGRNDKET-------IEESMVVNTT----LPKSSSREKRQTNG-TH

Query:  HLTLKERQKKIYPFPDADIPDMLEQLLE
          TLKERQ+K+YPFPD+D+PDML+QLLE
Subjt:  HLTLKERQKKIYPFPDADIPDMLEQLLE

KAA0050183.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.8e-8170.61Show/hide
Query:  AHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTYLEPESIDSWEELKREFLNRFYSTRRTVSMFELTNTKLRKGELVVNYINRWRAMSLDCKDRLTELS
        AHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYT LEPESIDSWE+L+R+FLNRFYSTRR VSM ELT TK RKGE V++YIN WRA+SLDCKDRLTELS
Subjt:  AHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTYLEPESIDSWEELKREFLNRFYSTRRTVSMFELTNTKLRKGELVVNYINRWRAMSLDCKDRLTELS

Query:  SVEMCIQGMHWELLYILKGIKPCTFEELATRTHNMELSIASRENQDLLLPNMRKEGRNDKET-------IEESMVVNTTLPKSSSREKR----QTNG-TH
        +VEMC QGMHW L+YIL+GIKP TFEELATR H+MELSIA+R N DLL+P +RKE +  K T        +E+MVV+TT  K  S+EK+    Q  G   
Subjt:  SVEMCIQGMHWELLYILKGIKPCTFEELATRTHNMELSIASRENQDLLLPNMRKEGRNDKET-------IEESMVVNTTLPKSSSREKR----QTNG-TH

Query:  HLTLKERQKKIYPFPDADIPDMLEQLLE
          TLKERQ+KIYPFPD+D+PDML+QLL+
Subjt:  HLTLKERQKKIYPFPDADIPDMLEQLLE

KAA0065377.1 uncharacterized protein E6C27_scaffold17G00390 [Cucumis melo var. makuwa]7.3e-8270.61Show/hide
Query:  AHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTYLEPESIDSWEELKREFLNRFYSTRRTVSMFELTNTKLRKGELVVNYINRWRAMSLDCKDRLTELS
        AHF+ETCE AGTRGDLLVKQFV+TLKGNAFDWYT LEPESIDSWE+L+R+FLNRFYSTRR VSM ELT TK RKGE V++YINRWRA+SLDCKDRLTELS
Subjt:  AHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTYLEPESIDSWEELKREFLNRFYSTRRTVSMFELTNTKLRKGELVVNYINRWRAMSLDCKDRLTELS

Query:  SVEMCIQGMHWELLYILKGIKPCTFEELATRTHNMELSIASRENQDLLLPNMRKEGRNDKET-------IEESMVVNTT----LPKSSSREKRQTNG-TH
        +VEMC QGMHW LLYIL+GIKP TFEELATR H+MELSIA+R N DLL+P +RKE +  K T        +E+MVV+TT    + K    EK Q  G   
Subjt:  SVEMCIQGMHWELLYILKGIKPCTFEELATRTHNMELSIASRENQDLLLPNMRKEGRNDKET-------IEESMVVNTT----LPKSSSREKRQTNG-TH

Query:  HLTLKERQKKIYPFPDADIPDMLEQLLE
          TLKERQ+K+YPFPD+D+PDML+QLLE
Subjt:  HLTLKERQKKIYPFPDADIPDMLEQLLE

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]6.6e-8371.49Show/hide
Query:  AHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTYLEPESIDSWEELKREFLNRFYSTRRTVSMFELTNTKLRKGELVVNYINRWRAMSLDCKDRLTELS
        AHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYT LEPESIDSWE+L+R+FLNRFYSTRR VSM ELT TK RKGE V++YINRWRA+SLDCKDRLTELS
Subjt:  AHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTYLEPESIDSWEELKREFLNRFYSTRRTVSMFELTNTKLRKGELVVNYINRWRAMSLDCKDRLTELS

Query:  SVEMCIQGMHWELLYILKGIKPCTFEELATRTHNMELSIASRENQDLLLPNMRKEGRNDKET-------IEESMVVNTT----LPKSSSREKRQTNG-TH
        +VEMC QGMHW LLYIL+GIKP TFEELATR H+MELSIA+R N DLL+P +RKE +  K T        +E+MVV+TT    + K    EKRQ  G   
Subjt:  SVEMCIQGMHWELLYILKGIKPCTFEELATRTHNMELSIASRENQDLLLPNMRKEGRNDKET-------IEESMVVNTT----LPKSSSREKRQTNG-TH

Query:  HLTLKERQKKIYPFPDADIPDMLEQLLE
          TLKERQ+K+YPFPD+D+PDML+QLLE
Subjt:  HLTLKERQKKIYPFPDADIPDMLEQLLE

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]2.8e-8169.87Show/hide
Query:  AHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTYLEPESIDSWEELKREFLNRFYSTRRTVSMFELTNTKLRKGELVVNYINRWRAMSLDCKDRLTELS
        AHFVETCENAG+RGD LV+QFVR+LKGNAF+WYT LEPESI+SWE+L++EFLNRFYSTRRTVSM ELTNTK RKGE V++YINRWRA+SLDCKDRLTELS
Subjt:  AHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTYLEPESIDSWEELKREFLNRFYSTRRTVSMFELTNTKLRKGELVVNYINRWRAMSLDCKDRLTELS

Query:  SVEMCIQGMHWELLYILKGIKPCTFEELATRTHNMELSIASRENQDLLLPNMRKEGRN-------DKETIEESMVVNTTLPKSS----SREKRQTNGT--
        +VEMC QGMHW LLYIL+GIKP TFEELATR H+MELSIASR  +D L+P ++K+ +         K T++ESMVVNTT  K S    +R +++ +G+  
Subjt:  SVEMCIQGMHWELLYILKGIKPCTFEELATRTHNMELSIASRENQDLLLPNMRKEGRN-------DKETIEESMVVNTTLPKSS----SREKRQTNGT--

Query:  HHLTLKERQKKIYPFPDADIPDMLEQLLE
          LTLKERQ+K+YPFPD+DI DMLEQLLE
Subjt:  HHLTLKERQKKIYPFPDADIPDMLEQLLE

TrEMBL top hitse value%identityAlignment
A0A5A7TZU9 Ribonuclease H3.2e-8371.49Show/hide
Query:  AHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTYLEPESIDSWEELKREFLNRFYSTRRTVSMFELTNTKLRKGELVVNYINRWRAMSLDCKDRLTELS
        AHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYT LEPESIDSWE+L+R+FLNRFYSTRR VSM ELT TK RKGE V++YINRWRA+SLDCKDRLTELS
Subjt:  AHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTYLEPESIDSWEELKREFLNRFYSTRRTVSMFELTNTKLRKGELVVNYINRWRAMSLDCKDRLTELS

Query:  SVEMCIQGMHWELLYILKGIKPCTFEELATRTHNMELSIASRENQDLLLPNMRKEGRNDKET-------IEESMVVNTT----LPKSSSREKRQTNG-TH
        +VEMC QGMHW LLYIL+GIKP TFEELATR H+MELSIA+R N DLL+P +RKE +  K T        +E+MVV+TT    + K    EKRQ  G   
Subjt:  SVEMCIQGMHWELLYILKGIKPCTFEELATRTHNMELSIASRENQDLLLPNMRKEGRNDKET-------IEESMVVNTT----LPKSSSREKRQTNG-TH

Query:  HLTLKERQKKIYPFPDADIPDMLEQLLE
          TLKERQ+K+YPFPD+D+PDML+QLLE
Subjt:  HLTLKERQKKIYPFPDADIPDMLEQLLE

A0A5A7U2P5 Ty3-gypsy retrotransposon protein2.3e-8170.61Show/hide
Query:  AHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTYLEPESIDSWEELKREFLNRFYSTRRTVSMFELTNTKLRKGELVVNYINRWRAMSLDCKDRLTELS
        AHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYT LEPESIDSWE+L+R+FLNRFYSTRR VSM ELT TK RKGE V++YIN WRA+SLDCKDRLTELS
Subjt:  AHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTYLEPESIDSWEELKREFLNRFYSTRRTVSMFELTNTKLRKGELVVNYINRWRAMSLDCKDRLTELS

Query:  SVEMCIQGMHWELLYILKGIKPCTFEELATRTHNMELSIASRENQDLLLPNMRKEGRNDKET-------IEESMVVNTTLPKSSSREKR----QTNG-TH
        +VEMC QGMHW L+YIL+GIKP TFEELATR H+MELSIA+R N DLL+P +RKE +  K T        +E+MVV+TT  K  S+EK+    Q  G   
Subjt:  SVEMCIQGMHWELLYILKGIKPCTFEELATRTHNMELSIASRENQDLLLPNMRKEGRNDKET-------IEESMVVNTTLPKSSSREKR----QTNG-TH

Query:  HLTLKERQKKIYPFPDADIPDMLEQLLE
          TLKERQ+KIYPFPD+D+PDML+QLL+
Subjt:  HLTLKERQKKIYPFPDADIPDMLEQLLE

A0A5A7UE14 Retrotransposon protein putative ty3-gypsy sub-class6.7e-8169.3Show/hide
Query:  AHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTYLEPESIDSWEELKREFLNRFYSTRRTVSMFELTNTKLRKGELVVNYINRWRAMSLDCKDRLTELS
        AHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYT LEPESIDSWE+L+R+FLNRFYSTRR VSM  LT TK RKGE V++YINRWRA+SLDCKDRL++LS
Subjt:  AHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTYLEPESIDSWEELKREFLNRFYSTRRTVSMFELTNTKLRKGELVVNYINRWRAMSLDCKDRLTELS

Query:  SVEMCIQGMHWELLYILKGIKPCTFEELATRTHNMELSIASRENQDLLLPNMRKEGRNDKET-------IEESMVVNTT----LPKSSSREKRQTNG-TH
        +VEMC QGMHW LLYIL+GIKP TFEELATR H+MELSIA+R N DLL+P +RKE +  K T        +++M+V+TT    + K    EKRQ  G   
Subjt:  SVEMCIQGMHWELLYILKGIKPCTFEELATRTHNMELSIASRENQDLLLPNMRKEGRNDKET-------IEESMVVNTT----LPKSSSREKRQTNG-TH

Query:  HLTLKERQKKIYPFPDADIPDMLEQLLE
          TLKERQ+K+YPFPD+D+PDML+QLLE
Subjt:  HLTLKERQKKIYPFPDADIPDMLEQLLE

A0A5A7VE63 Uncharacterized protein3.6e-8270.61Show/hide
Query:  AHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTYLEPESIDSWEELKREFLNRFYSTRRTVSMFELTNTKLRKGELVVNYINRWRAMSLDCKDRLTELS
        AHF+ETCE AGTRGDLLVKQFV+TLKGNAFDWYT LEPESIDSWE+L+R+FLNRFYSTRR VSM ELT TK RKGE V++YINRWRA+SLDCKDRLTELS
Subjt:  AHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTYLEPESIDSWEELKREFLNRFYSTRRTVSMFELTNTKLRKGELVVNYINRWRAMSLDCKDRLTELS

Query:  SVEMCIQGMHWELLYILKGIKPCTFEELATRTHNMELSIASRENQDLLLPNMRKEGRNDKET-------IEESMVVNTT----LPKSSSREKRQTNG-TH
        +VEMC QGMHW LLYIL+GIKP TFEELATR H+MELSIA+R N DLL+P +RKE +  K T        +E+MVV+TT    + K    EK Q  G   
Subjt:  SVEMCIQGMHWELLYILKGIKPCTFEELATRTHNMELSIASRENQDLLLPNMRKEGRNDKET-------IEESMVVNTT----LPKSSSREKRQTNG-TH

Query:  HLTLKERQKKIYPFPDADIPDMLEQLLE
          TLKERQ+K+YPFPD+D+PDML+QLLE
Subjt:  HLTLKERQKKIYPFPDADIPDMLEQLLE

A0A5D3BIH8 Uncharacterized protein3.2e-8371.49Show/hide
Query:  AHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTYLEPESIDSWEELKREFLNRFYSTRRTVSMFELTNTKLRKGELVVNYINRWRAMSLDCKDRLTELS
        AHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYT LEPESIDSWE+L+R+FLNRFYSTRR VSM ELT TK RKGE V++YINRWRA+SLDCKDRLTELS
Subjt:  AHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTYLEPESIDSWEELKREFLNRFYSTRRTVSMFELTNTKLRKGELVVNYINRWRAMSLDCKDRLTELS

Query:  SVEMCIQGMHWELLYILKGIKPCTFEELATRTHNMELSIASRENQDLLLPNMRKEGRNDKET-------IEESMVVNTT----LPKSSSREKRQTNG-TH
        +VEMC QGMHW LLYIL+GIKP TFEELATR H+MELSIA+R N DLL+P +RKE +  K T        +E+MVV+TT    + K    EKRQ  G   
Subjt:  SVEMCIQGMHWELLYILKGIKPCTFEELATRTHNMELSIASRENQDLLLPNMRKEGRNDKET-------IEESMVVNTT----LPKSSSREKRQTNG-TH

Query:  HLTLKERQKKIYPFPDADIPDMLEQLLE
          TLKERQ+K+YPFPD+D+PDML+QLLE
Subjt:  HLTLKERQKKIYPFPDADIPDMLEQLLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACATCTGATTCAGAAGGGTGCTGCTCTGGTCATGACAAGAAGCTTTTTGCACATCCAGTGTTTGTGCCTCTACAACAAGGCAAATACCAGTACGTCCAAAAAGTG
TGCCCACTTCGTCGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAACAGTTCGTTCGAACACTTAAAGGAAATGCGTTTGACTGGTACACTTATCTAG
AACCTGAGTCAATAGACAGTTGGGAGGAACTCAAACGAGAGTTTTTGAATCGTTTCTATAGCACTAGACGAACCGTTAGCATGTTCGAGCTCACCAACACTAAACTACGA
AAAGGTGAACTCGTTGTTAACTATATAAATCGTTGGAGAGCCATGAGTCTAGATTGCAAAGATCGCCTCACTGAACTCTCTTCCGTTGAGATGTGCATTCAAGGCATGCA
CTGGGAACTCCTCTACATACTTAAAGGTATAAAGCCTTGCACCTTTGAAGAATTAGCTACTCGCACTCACAATATGGAGCTAAGTATTGCTAGTCGAGAAAACCAAGACC
TTCTACTCCCTAACATGAGGAAAGAAGGAAGGAACGACAAAGAGACTATAGAAGAATCTATGGTTGTAAACACAACCCTTCCCAAGTCATCTTCGAGGGAAAAACGACAA
ACAAATGGAACGCATCACTTAACTTTAAAGGAAAGACAAAAGAAAATCTATCCTTTCCCTGATGCCGACATCCCTGACATGTTGGAACAACTACTGGAAGCGTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCACATCTGATTCAGAAGGGTGCTGCTCTGGTCATGACAAGAAGCTTTTTGCACATCCAGTGTTTGTGCCTCTACAACAAGGCAAATACCAGTACGTCCAAAAAGTG
TGCCCACTTCGTCGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAACAGTTCGTTCGAACACTTAAAGGAAATGCGTTTGACTGGTACACTTATCTAG
AACCTGAGTCAATAGACAGTTGGGAGGAACTCAAACGAGAGTTTTTGAATCGTTTCTATAGCACTAGACGAACCGTTAGCATGTTCGAGCTCACCAACACTAAACTACGA
AAAGGTGAACTCGTTGTTAACTATATAAATCGTTGGAGAGCCATGAGTCTAGATTGCAAAGATCGCCTCACTGAACTCTCTTCCGTTGAGATGTGCATTCAAGGCATGCA
CTGGGAACTCCTCTACATACTTAAAGGTATAAAGCCTTGCACCTTTGAAGAATTAGCTACTCGCACTCACAATATGGAGCTAAGTATTGCTAGTCGAGAAAACCAAGACC
TTCTACTCCCTAACATGAGGAAAGAAGGAAGGAACGACAAAGAGACTATAGAAGAATCTATGGTTGTAAACACAACCCTTCCCAAGTCATCTTCGAGGGAAAAACGACAA
ACAAATGGAACGCATCACTTAACTTTAAAGGAAAGACAAAAGAAAATCTATCCTTTCCCTGATGCCGACATCCCTGACATGTTGGAACAACTACTGGAAGCGTACTGA
Protein sequenceShow/hide protein sequence
MAHLIQKGAALVMTRSFLHIQCLCLYNKANTSTSKKCAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTYLEPESIDSWEELKREFLNRFYSTRRTVSMFELTNTKLR
KGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYILKGIKPCTFEELATRTHNMELSIASRENQDLLLPNMRKEGRNDKETIEESMVVNTTLPKSSSREKRQ
TNGTHHLTLKERQKKIYPFPDADIPDMLEQLLEAY