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Lag0000489 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000489
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr4:8675889..8679577
RNA-Seq ExpressionLag0000489
SyntenyLag0000489
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-4185.98Show/hide
Query:  MEAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVF
        MEAEYV A EAAKEA WLRKFL D EVV  MNLPITLYCDNSG +ANSKEP SHKR KHIERKYHLIREIV+R DVIVTKIA+EHNIADPFTKTL+AKVF
Subjt:  MEAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVF

Query:  EGHLESL
        EGHLESL
Subjt:  EGHLESL
KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-4185.98Show/hide
Query:  MEAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVF
        MEAEYV A EAAKEA WLRKFL D EVV  MNLPITLYCDNSG +ANSKEP SHKR KHIERKYHLIREIV+R DVIVTKIA+EHNIADPFTKTL+AKVF
Subjt:  MEAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVF

Query:  EGHLESL
        EGHLESL
Subjt:  EGHLESL
KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-4185.98Show/hide
Query:  MEAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVF
        MEAEYV A EAAKEA WLRKFL D EVV  MNLPITLYCDNSG +ANSKEP SHKR KHIERKYHLIREIV+R DVIVTKIA+EHNIADPFTKTL+AKVF
Subjt:  MEAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVF

Query:  EGHLESL
        EGHLESL
Subjt:  EGHLESL
KAA0059678.1 gag/pol protein [Cucumis melo var. makuwa]5.9e-4285.05Show/hide
Query:  MEAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVF
        MEAEYV A +AAKEA WLRKFL D EVV   NLPITLYCDNSG +ANSKEPCSHKR KHIERKYHLIREIV+R DVIVTKIA+EHNIADPFTKTL+AKVF
Subjt:  MEAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVF

Query:  EGHLESL
        EGHLESL
Subjt:  EGHLESL
TYK04889.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]5.9e-4285.05Show/hide
Query:  MEAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVF
        MEAEYV A EAAKEA WLRKFL D EVV  MNL ITLYCDNSG +ANSKEPCSHKRRKHIERKYHLIREIV+R+D IVTKIA+EHNIA+PFTKTL+AKVF
Subjt:  MEAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVF

Query:  EGHLESL
        EGHLESL
Subjt:  EGHLESL
TrEMBL top hitse value%identityAlignment
A0A5A7TKM4 Gag/pol protein6.3e-4285.98Show/hide
Query:  MEAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVF
        MEAEYV A EAAKEA WLRKFL D EVV  MNLPITLYCDNSG +ANSKEP SHKR KHIERKYHLIREIV+R DVIVTKIA+EHNIADPFTKTL+AKVF
Subjt:  MEAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVF

Query:  EGHLESL
        EGHLESL
Subjt:  EGHLESL
A0A5A7TZD0 Gag/pol protein6.3e-4285.98Show/hide
Query:  MEAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVF
        MEAEYV A EAAKEA WLRKFL D EVV  MNLPITLYCDNSG +ANSKEP SHKR KHIERKYHLIREIV+R DVIVTKIA+EHNIADPFTKTL+AKVF
Subjt:  MEAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVF

Query:  EGHLESL
        EGHLESL
Subjt:  EGHLESL
A0A5A7UWW4 Gag/pol protein2.8e-4285.05Show/hide
Query:  MEAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVF
        MEAEYV A +AAKEA WLRKFL D EVV   NLPITLYCDNSG +ANSKEPCSHKR KHIERKYHLIREIV+R DVIVTKIA+EHNIADPFTKTL+AKVF
Subjt:  MEAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVF

Query:  EGHLESL
        EGHLESL
Subjt:  EGHLESL
A0A5A7UYE8 Gag/pol protein6.3e-4285.98Show/hide
Query:  MEAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVF
        MEAEYV A EAAKEA WLRKFL D EVV  MNLPITLYCDNSG +ANSKEP SHKR KHIERKYHLIREIV+R DVIVTKIA+EHNIADPFTKTL+AKVF
Subjt:  MEAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVF

Query:  EGHLESL
        EGHLESL
Subjt:  EGHLESL
A0A5D3C3C9 Retrovirus-related pol polyprotein from transposon tnt 1-942.8e-4285.05Show/hide
Query:  MEAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVF
        MEAEYV A EAAKEA WLRKFL D EVV  MNL ITLYCDNSG +ANSKEPCSHKRRKHIERKYHLIREIV+R+D IVTKIA+EHNIA+PFTKTL+AKVF
Subjt:  MEAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVF

Query:  EGHLESL
        EGHLESL
Subjt:  EGHLESL
SwissProt top hitse value%identityAlignment
P04146 Copia protein5.4e-1439.32Show/hide
Query:  EAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVFE
        EAEY+   EA +EA WL+  LT   +  K+  PI +Y DN G I+ +  P  HKR KHI+ KYH  RE V+   + +  I TE+ +AD FTK L A  F 
Subjt:  EAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVFE

Query:  GHLESLVIVSQTNSRED
           + L ++    S  +
Subjt:  GHLESLVIVSQTNSRED
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-1241Show/hide
Query:  EAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVFE
        EAEY+ A E  KE  WL++FL +  + +K      +YCD+   I  SK    H R KHI+ +YH IRE+V+ + + V KI+T  N AD  TK +    FE
Subjt:  EAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVFE
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCAGAGTATGTTGTTGCACGTGAAGCAGCAAAGGAAGCAGAATGGCTACGGAAGTTCCTGACAGATTTTGAAGTTGTTCGAAAAATGAACCTCCCCATAACTTT
ATACTGTGATAACAGTGGGACAATAGCCAATTCTAAAGAGCCTTGCAGCCACAAGCGAAGGAAACACATCGAGAGGAAATATCACCTGATTCGGGAGATAGTGGAGCGCA
AAGATGTGATTGTCACGAAGATCGCTACAGAGCACAATATCGCTGATCCATTTACGAAGACTCTCTCGGCTAAAGTGTTTGAGGGTCATCTAGAGAGCTTAGTGATTGTA
TCACAAACCAATAGTAGAGAAGATCCAAGTGGTTGTCCAAGAGTCATTGGTGTGAATATTAGAGCCTTAGATTACACGAATTGGGAGCTACAAGAGCCGCCGAGACCCCC
CCTTGCGATTTTTGACCTCAGCCGGCAGCTCTCTTTCCCCGTGTGTGAAGTCACCGTCATTCCTCCCTTTTCCTCGTCGTGCTTCTGCCGGAGATCAAACGCCGTCGTCT
GTTCAATCTCAAGTCGAGCCGTCATAGCCTCCCGCGCGCATAGCAGACCCGTAGTTGAAGCCACGCTGCCGTCATCATCTCTCCCTCTTCTTTCACGCGCGTCGGCTTCT
GTGAGACCCATGAGTTCGGTTCCTTCTTCTCCATCAATCCGTGCCAATTGCAAGCCGCACGTTTTAGTCTTCGAAACCCGCACGGGCAACCTCTGTTATGCGAGTATGGT
GTTGTTCTGGCCCTTCATGAGGTTTCAATTGGTGAATTCCAATGAAATTCTTCGTCGCTTCAGTGTTTCGACCCAAAGCGGGCTTTCAGCGATTACCCACAAGTCGTGCG
ACCTTGAATTGAAGCGCTCTTGGTCCAACGACTTTAGATTGTCGTTTCTGGAGCCTTGTGATCATTGGCCAGCAAGCTTTAAGTTTGACCCAATTCGAACCCCGGGGAGT
GCATGTTCAAAGGAGTTTGGTGTTGCTTGGGATCAATTAGAGCTTACTCGAGTTATTTCCAACAAGGGCTCATTCTGTTTGGTGGAGCTTAAAAGGTACAAATGGTCAGG
GATCGGTGTGATGAGTCTAGAAAGCATCGGTGCACCTTGGGTACAATGGCCAAGGGGCGATGCGCTGTTCGAGGCATTGGGTGCAAATGGTCAAGGGTCGAACGTTAAGC
TCTGTAGAGAGCATTGTGGCCTTAGGTATAAATGGTCAGGGGCAGTGCGTCTCGAAGGGTTAGTCTTGGAGAGCCAAGTAAGGGTTGCTTACCAGTACCGTGGTTGTACT
GACCCCCTCCCCTCCTTTCCCCCAACATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCAGAGTATGTTGTTGCACGTGAAGCAGCAAAGGAAGCAGAATGGCTACGGAAGTTCCTGACAGATTTTGAAGTTGTTCGAAAAATGAACCTCCCCATAACTTT
ATACTGTGATAACAGTGGGACAATAGCCAATTCTAAAGAGCCTTGCAGCCACAAGCGAAGGAAACACATCGAGAGGAAATATCACCTGATTCGGGAGATAGTGGAGCGCA
AAGATGTGATTGTCACGAAGATCGCTACAGAGCACAATATCGCTGATCCATTTACGAAGACTCTCTCGGCTAAAGTGTTTGAGGGTCATCTAGAGAGCTTAGTGATTGTA
TCACAAACCAATAGTAGAGAAGATCCAAGTGGTTGTCCAAGAGTCATTGGTGTGAATATTAGAGCCTTAGATTACACGAATTGGGAGCTACAAGAGCCGCCGAGACCCCC
CCTTGCGATTTTTGACCTCAGCCGGCAGCTCTCTTTCCCCGTGTGTGAAGTCACCGTCATTCCTCCCTTTTCCTCGTCGTGCTTCTGCCGGAGATCAAACGCCGTCGTCT
GTTCAATCTCAAGTCGAGCCGTCATAGCCTCCCGCGCGCATAGCAGACCCGTAGTTGAAGCCACGCTGCCGTCATCATCTCTCCCTCTTCTTTCACGCGCGTCGGCTTCT
GTGAGACCCATGAGTTCGGTTCCTTCTTCTCCATCAATCCGTGCCAATTGCAAGCCGCACGTTTTAGTCTTCGAAACCCGCACGGGCAACCTCTGTTATGCGAGTATGGT
GTTGTTCTGGCCCTTCATGAGGTTTCAATTGGTGAATTCCAATGAAATTCTTCGTCGCTTCAGTGTTTCGACCCAAAGCGGGCTTTCAGCGATTACCCACAAGTCGTGCG
ACCTTGAATTGAAGCGCTCTTGGTCCAACGACTTTAGATTGTCGTTTCTGGAGCCTTGTGATCATTGGCCAGCAAGCTTTAAGTTTGACCCAATTCGAACCCCGGGGAGT
GCATGTTCAAAGGAGTTTGGTGTTGCTTGGGATCAATTAGAGCTTACTCGAGTTATTTCCAACAAGGGCTCATTCTGTTTGGTGGAGCTTAAAAGGTACAAATGGTCAGG
GATCGGTGTGATGAGTCTAGAAAGCATCGGTGCACCTTGGGTACAATGGCCAAGGGGCGATGCGCTGTTCGAGGCATTGGGTGCAAATGGTCAAGGGTCGAACGTTAAGC
TCTGTAGAGAGCATTGTGGCCTTAGGTATAAATGGTCAGGGGCAGTGCGTCTCGAAGGGTTAGTCTTGGAGAGCCAAGTAAGGGTTGCTTACCAGTACCGTGGTTGTACT
GACCCCCTCCCCTCCTTTCCCCCAACATTTTAG
Protein sequenceShow/hide protein sequence
MEAEYVVAREAAKEAEWLRKFLTDFEVVRKMNLPITLYCDNSGTIANSKEPCSHKRRKHIERKYHLIREIVERKDVIVTKIATEHNIADPFTKTLSAKVFEGHLESLVIV
SQTNSREDPSGCPRVIGVNIRALDYTNWELQEPPRPPLAIFDLSRQLSFPVCEVTVIPPFSSSCFCRRSNAVVCSISSRAVIASRAHSRPVVEATLPSSSLPLLSRASAS
VRPMSSVPSSPSIRANCKPHVLVFETRTGNLCYASMVLFWPFMRFQLVNSNEILRRFSVSTQSGLSAITHKSCDLELKRSWSNDFRLSFLEPCDHWPASFKFDPIRTPGS
ACSKEFGVAWDQLELTRVISNKGSFCLVELKRYKWSGIGVMSLESIGAPWVQWPRGDALFEALGANGQGSNVKLCREHCGLRYKWSGAVRLEGLVLESQVRVAYQYRGCT
DPLPSFPPTF