; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000496 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000496
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr4:8940656..8940970
RNA-Seq ExpressionLag0000496
SyntenyLag0000496
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5443010.1 hypothetical protein F2P56_035607 [Juglans regia]9.2e-1542.16Show/hide
Query:  IPIGNRDSRDLITWGSDSKGNFSVKSAYHLAHNLANADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCRRDP
        IP+    S D + W   S G F+VKSAYHL   L    K   S S   +  WK  W+++V P EK+  WRA  N+LPTQSN+  R I  NP C +C  + 
Subjt:  IPIGNRDSRDLITWGSDSKGNFSVKSAYHLAHNLANADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCRRDP

Query:  ES
        E+
Subjt:  ES

XP_018805736.2 uncharacterized protein LOC108979499 [Juglans regia]3.2e-1542.16Show/hide
Query:  IPIGNRDSRDLITWGSDSKGNFSVKSAYHLAHNLANADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCRRDP
        IP+   +  D + W   S G F+VKSAYHL   L    K   S S  S+  WK  W+++V P EK+  WRA  N+LPTQSN+  R I  NP C +C  + 
Subjt:  IPIGNRDSRDLITWGSDSKGNFSVKSAYHLAHNLANADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCRRDP

Query:  ES
        E+
Subjt:  ES

XP_018829825.2 uncharacterized protein LOC108997893 [Juglans regia]3.2e-1541.58Show/hide
Query:  PIGNRDSRDLITWGSDSKGNFSVKSAYHLAHNLANADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCRRDPE
        PI    +RD I W     G+FSVKSAYHL  +   A+    S S+  +  WK  WK+ V P +K   WRA + +LPTQSN+  + + ++PLC +C R+ E
Subjt:  PIGNRDSRDLITWGSDSKGNFSVKSAYHLAHNLANADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCRRDPE

Query:  S
        S
Subjt:  S

XP_030943489.1 uncharacterized protein LOC115968280 [Quercus lobata]2.7e-1440.95Show/hide
Query:  MGIPIGNRDSRDLITWGSDSKGNFSVKSAYHLAHNLAN-ADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCR
        + IP+      D I W  + KG F+VKSAY++A NL N AD +  S        WK  W +K+  K ++  WRA  N LPT  N+  RGI+ + LC  C 
Subjt:  MGIPIGNRDSRDLITWGSDSKGNFSVKSAYHLAHNLAN-ADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCR

Query:  RDPES
        +DPES
Subjt:  RDPES

XP_042942883.1 uncharacterized protein LOC122277065 [Carya illinoinensis]3.4e-1743.56Show/hide
Query:  PIGNRDSRDLITWGSDSKGNFSVKSAYHLAHNLANADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCRRDPE
        P+ + +SRD + W     G+FSV+SAYH+  +   ADK   S S   +G W   W I+  P EK+  WRA ++SLPTQ N+  R I ++PLC LC R+ E
Subjt:  PIGNRDSRDLITWGSDSKGNFSVKSAYHLAHNLANADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCRRDPE

Query:  S
        S
Subjt:  S

TrEMBL top hitse value%identityAlignment
A0A2I4DF11 uncharacterized protein LOC1089794991.5e-1542.16Show/hide
Query:  IPIGNRDSRDLITWGSDSKGNFSVKSAYHLAHNLANADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCRRDP
        IP+   +  D + W   S G F+VKSAYHL   L    K   S S  S+  WK  W+++V P EK+  WRA  N+LPTQSN+  R I  NP C +C  + 
Subjt:  IPIGNRDSRDLITWGSDSKGNFSVKSAYHLAHNLANADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCRRDP

Query:  ES
        E+
Subjt:  ES

A0A2I4FDV1 uncharacterized protein LOC1089978931.5e-1541.58Show/hide
Query:  PIGNRDSRDLITWGSDSKGNFSVKSAYHLAHNLANADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCRRDPE
        PI    +RD I W     G+FSVKSAYHL  +   A+    S S+  +  WK  WK+ V P +K   WRA + +LPTQSN+  + + ++PLC +C R+ E
Subjt:  PIGNRDSRDLITWGSDSKGNFSVKSAYHLAHNLANADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCRRDPE

Query:  S
        S
Subjt:  S

A0A2N9EFT4 Uncharacterized protein5.8e-1538.83Show/hide
Query:  MGIPIGNRDSRDLITWGSDSKGNFSVKSAYHLAHNLANADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCRR
        +GIP+ +  S D + W   S G +SV+SAYH+    A  D+ S S+       WK+ W +KV+P+ K   WRA   +LPT+SN+  R +  +PLC  C+R
Subjt:  MGIPIGNRDSRDLITWGSDSKGNFSVKSAYHLAHNLANADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCRR

Query:  DPE
          E
Subjt:  DPE

A0A2N9H1N4 RNase H domain-containing protein2.6e-1540.38Show/hide
Query:  MGIPIGNRDSRDLITWGSDSKGNFSVKSAYHLAHNLANADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCRR
        +GIP+ +R+  D + WG    G +SVKS YHL  N +  ++   SD S     WK  W + V PK +   WRA  NSLPT+SN+  R I  +P C +C +
Subjt:  MGIPIGNRDSRDLITWGSDSKGNFSVKSAYHLAHNLANADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCRR

Query:  DPES
          ES
Subjt:  DPES

A0A2N9I509 Uncharacterized protein5.8e-1538.83Show/hide
Query:  IPIGNRDSRDLITWGSDSKGNFSVKSAYHLAHNLANADKDSTSDS-SLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCRRD
        IP+ +R   D + W +   G FSV+SAYH+  + AN D+ S S S SL   FW   W ++V PK KL  W+A +N +PTQ+ +  +G+ ++  C  C  +
Subjt:  IPIGNRDSRDLITWGSDSKGNFSVKSAYHLAHNLANADKDSTSDS-SLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCRRD

Query:  PES
        PE+
Subjt:  PES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein2.6e-0727.96Show/hide
Query:  DLITWGSDSKGNFSVKSAYHLAHNLANADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCRRDPES
        D I W  ++ G ++V+S Y L  +  + +  + +    S       W + ++PK K   WRA+  +L T   +  RG+  +P C  C R+ ES
Subjt:  DLITWGSDSKGNFSVKSAYHLAHNLANADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCRRDPES

AT3G26855.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.4e-0743.18Show/hide
Query:  DFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCR
        D W +K+ PK KL  W+A+ N+LP  + +L R I   P C  CR
Subjt:  DFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCR

AT4G29090.1 Ribonuclease H-like superfamily protein2.9e-0628.42Show/hide
Query:  GNRDSRDLITWGSDSKGNFSVKSAYHLAHNLAN--ADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLC
        G R   D  TW   S G+++VKS Y +   + N  +     S+ SL+   ++  WK +  PK +   W+ + NSLP    +  R +     C  C
Subjt:  GNRDSRDLITWGSDSKGNFSVKSAYHLAHNLAN--ADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGATTCCAATTGGGAATAGGGACTCAAGAGATTTGATTACTTGGGGGTCGGATTCAAAAGGAAATTTCTCTGTCAAAAGTGCCTACCACTTAGCTCATAATTTAGC
TAATGCCGACAAGGATTCTACCTCAGACTCTTCCCTATCAAGAGGCTTTTGGAAGGATTTCTGGAAGATCAAAGTCGTCCCTAAGGAGAAGCTTTGCTCTTGGAGAGCAA
TTCGAAACTCTCTCCCTACTCAATCTAATATTCTTGGCAGAGGAATAGACACTAATCCATTATGTTTTCTATGCAGGAGGGATCCGGAATCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGATTCCAATTGGGAATAGGGACTCAAGAGATTTGATTACTTGGGGGTCGGATTCAAAAGGAAATTTCTCTGTCAAAAGTGCCTACCACTTAGCTCATAATTTAGC
TAATGCCGACAAGGATTCTACCTCAGACTCTTCCCTATCAAGAGGCTTTTGGAAGGATTTCTGGAAGATCAAAGTCGTCCCTAAGGAGAAGCTTTGCTCTTGGAGAGCAA
TTCGAAACTCTCTCCCTACTCAATCTAATATTCTTGGCAGAGGAATAGACACTAATCCATTATGTTTTCTATGCAGGAGGGATCCGGAATCCTAG
Protein sequenceShow/hide protein sequence
MGIPIGNRDSRDLITWGSDSKGNFSVKSAYHLAHNLANADKDSTSDSSLSRGFWKDFWKIKVVPKEKLCSWRAIRNSLPTQSNILGRGIDTNPLCFLCRRDPES