; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0000536 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000536
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRT_RNaseH_2 domain-containing protein
Genome locationchr4:9599969..9600628
RNA-Seq ExpressionLag0000536
SyntenyLag0000536
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON35554.1 hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]3.1e-0835.61Show/hide
Query:  RFINNLARAKYAEMLR-RDFLFEQGFGDD-------LPRFLRIGIGNHGWSQFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNL
        +F    A  +Y   ++ R    E+GF  D       LP F+   I  H W QFCA P+     +VREFYAN+ D  E    VRGV V WS  AIN++F L
Subjt:  RFINNLARAKYAEMLR-RDFLFEQGFGDD-------LPRFLRIGIGNHGWSQFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNL

Query:  QDSPHVCFNEMVVAPSNDQLNATVREVGIEGA
         D P    +E +   +   L   +  V + GA
Subjt:  QDSPHVCFNEMVVAPSNDQLNATVREVGIEGA

PON42276.1 hypothetical protein PanWU01x14_283280 [Parasponia andersonii]2.4e-0836Show/hide
Query:  ARAKYAEMLR-RDFLFEQGF-GD-----DLPRFLRIGIGNHGWSQFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNLQDSPHVC
        A  +Y E ++ R    E+GF GD     + P F+   I  H W  FCA P+ + + +VREFYAN+ + ++    VRGV V  S  AIN+++ L D P   
Subjt:  ARAKYAEMLR-RDFLFEQGF-GD-----DLPRFLRIGIGNHGWSQFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNLQDSPHVC

Query:  FNEMVVAPSNDQLNATVREVGIEGA
         +E V A +  +L   +  V I GA
Subjt:  FNEMVVAPSNDQLNATVREVGIEGA

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]1.8e-0841.18Show/hide
Query:  RFINNLARAKYAEMLR-RDFLFEQGFGDD-------LPRFLRIGIGNHGWSQFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNL
        +F    A  +Y   ++ R    E+GF  D       LP F+   I  H W QFCA P+     +VREFYAN+ D EE    VRGV V WS  AIN++F L
Subjt:  RFINNLARAKYAEMLR-RDFLFEQGFGDD-------LPRFLRIGIGNHGWSQFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNL

Query:  QD
         D
Subjt:  QD

PON85987.1 hypothetical protein TorRG33x02_181920, partial [Trema orientale]1.8e-0835.07Show/hide
Query:  ETEEPRLPYNRFINNLARAKYAEMLRRDFLFEQGFGDDLPRFLRIGIGNHGWSQFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLF
        ETEE    Y   I      K      + FL           F+   I  H W QFCA P+     +VREFYAN+ D EE    VRGV V W+  AIN++F
Subjt:  ETEEPRLPYNRFINNLARAKYAEMLRRDFLFEQGFGDDLPRFLRIGIGNHGWSQFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLF

Query:  NLQDSPHVCFNEMVVAPSNDQLNATVREVGIEGA
         L D P    +E V   +  +L   +  V   GA
Subjt:  NLQDSPHVCFNEMVVAPSNDQLNATVREVGIEGA

PON90635.1 hypothetical protein TorRG33x02_134920 [Trema orientale]1.4e-0835.88Show/hide
Query:  RFINNLARAKYAEMLRRDFL-FEQGFGDD------LPRFLRIGIGNHGWSQFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNLQ
        +F +  A A+Y E ++   L  E+GF  +       P F+   I  H W  FCA  +     +VREFYAN+ D EE    V+GV V WS  AIN+LF L 
Subjt:  RFINNLARAKYAEMLRRDFL-FEQGFGDD------LPRFLRIGIGNHGWSQFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNLQ

Query:  D--SPHVCFNEMVVAPSNDQLNATVREVGIE
        D    H  F E V       +  T+   G+E
Subjt:  D--SPHVCFNEMVVAPSNDQLNATVREVGIE

TrEMBL top hitse value%identityAlignment
A0A2P5AGA5 Uncharacterized protein (Fragment)1.5e-0835.61Show/hide
Query:  RFINNLARAKYAEMLR-RDFLFEQGFGDD-------LPRFLRIGIGNHGWSQFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNL
        +F    A  +Y   ++ R    E+GF  D       LP F+   I  H W QFCA P+     +VREFYAN+ D  E    VRGV V WS  AIN++F L
Subjt:  RFINNLARAKYAEMLR-RDFLFEQGFGDD-------LPRFLRIGIGNHGWSQFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNL

Query:  QDSPHVCFNEMVVAPSNDQLNATVREVGIEGA
         D P    +E +   +   L   +  V + GA
Subjt:  QDSPHVCFNEMVVAPSNDQLNATVREVGIEGA

A0A2P5B0K0 Uncharacterized protein1.1e-0836Show/hide
Query:  ARAKYAEMLR-RDFLFEQGF-GD-----DLPRFLRIGIGNHGWSQFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNLQDSPHVC
        A  +Y E ++ R    E+GF GD     + P F+   I  H W  FCA P+ + + +VREFYAN+ + ++    VRGV V  S  AIN+++ L D P   
Subjt:  ARAKYAEMLR-RDFLFEQGF-GD-----DLPRFLRIGIGNHGWSQFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNLQDSPHVC

Query:  FNEMVVAPSNDQLNATVREVGIEGA
         +E V A +  +L   +  V I GA
Subjt:  FNEMVVAPSNDQLNATVREVGIEGA

A0A2P5BCG4 Uncharacterized protein (Fragment)8.7e-0941.18Show/hide
Query:  RFINNLARAKYAEMLR-RDFLFEQGFGDD-------LPRFLRIGIGNHGWSQFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNL
        +F    A  +Y   ++ R    E+GF  D       LP F+   I  H W QFCA P+     +VREFYAN+ D EE    VRGV V WS  AIN++F L
Subjt:  RFINNLARAKYAEMLR-RDFLFEQGFGDD-------LPRFLRIGIGNHGWSQFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNL

Query:  QD
         D
Subjt:  QD

A0A2P5EK98 Uncharacterized protein (Fragment)8.7e-0935.07Show/hide
Query:  ETEEPRLPYNRFINNLARAKYAEMLRRDFLFEQGFGDDLPRFLRIGIGNHGWSQFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLF
        ETEE    Y   I      K      + FL           F+   I  H W QFCA P+     +VREFYAN+ D EE    VRGV V W+  AIN++F
Subjt:  ETEEPRLPYNRFINNLARAKYAEMLRRDFLFEQGFGDDLPRFLRIGIGNHGWSQFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLF

Query:  NLQDSPHVCFNEMVVAPSNDQLNATVREVGIEGA
         L D P    +E V   +  +L   +  V   GA
Subjt:  NLQDSPHVCFNEMVVAPSNDQLNATVREVGIEGA

A0A2P5EYL5 Uncharacterized protein6.7e-0935.88Show/hide
Query:  RFINNLARAKYAEMLRRDFL-FEQGFGDD------LPRFLRIGIGNHGWSQFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNLQ
        +F +  A A+Y E ++   L  E+GF  +       P F+   I  H W  FCA  +     +VREFYAN+ D EE    V+GV V WS  AIN+LF L 
Subjt:  RFINNLARAKYAEMLRRDFL-FEQGFGDD------LPRFLRIGIGNHGWSQFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNLQ

Query:  D--SPHVCFNEMVVAPSNDQLNATVREVGIE
        D    H  F E V       +  T+   G+E
Subjt:  D--SPHVCFNEMVVAPSNDQLNATVREVGIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGAAAGTGCCACGATGTCGCCGTCGGAAGCAAAAAGTTGGTCGTGTTAAGGTCGAAGACAAAGCAAGAGAGGAAGTAGAGAAAAAGGCTGAAGAGGAAACTTTGCT
CAAACAAAGGGAAGACAAGGGAAAAGATATTGTTGAAGCGTCGTCGGATCTAGAAGTTAGTGAAACAGAGGAGCCAAGGTTACCGTATAACCGCTTCATCAACAATCTTG
CCAGAGCAAAGTATGCTGAGATGCTGAGAAGAGACTTTTTGTTTGAACAAGGATTTGGCGATGATTTGCCACGGTTCTTAAGGATTGGAATAGGGAACCATGGCTGGAGT
CAATTCTGTGCAAAGCCGGACCCGGTCAACTCCAACATTGTTCGAGAGTTTTATGCCAATATTGATGATCAAGAAGAATTTCAGGCTATCGTCCGAGGAGTGCCCGTTGA
CTGGAGCCCAGGAGCTATCAATTCTTTATTCAACCTTCAGGACTCCCCGCACGTATGCTTCAATGAGATGGTGGTAGCGCCATCAAATGATCAGTTAAATGCGACTGTCC
GAGAGGTTGGCATCGAGGGAGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCGAAAGTGCCACGATGTCGCCGTCGGAAGCAAAAAGTTGGTCGTGTTAAGGTCGAAGACAAAGCAAGAGAGGAAGTAGAGAAAAAGGCTGAAGAGGAAACTTTGCT
CAAACAAAGGGAAGACAAGGGAAAAGATATTGTTGAAGCGTCGTCGGATCTAGAAGTTAGTGAAACAGAGGAGCCAAGGTTACCGTATAACCGCTTCATCAACAATCTTG
CCAGAGCAAAGTATGCTGAGATGCTGAGAAGAGACTTTTTGTTTGAACAAGGATTTGGCGATGATTTGCCACGGTTCTTAAGGATTGGAATAGGGAACCATGGCTGGAGT
CAATTCTGTGCAAAGCCGGACCCGGTCAACTCCAACATTGTTCGAGAGTTTTATGCCAATATTGATGATCAAGAAGAATTTCAGGCTATCGTCCGAGGAGTGCCCGTTGA
CTGGAGCCCAGGAGCTATCAATTCTTTATTCAACCTTCAGGACTCCCCGCACGTATGCTTCAATGAGATGGTGGTAGCGCCATCAAATGATCAGTTAAATGCGACTGTCC
GAGAGGTTGGCATCGAGGGAGCCTAG
Protein sequenceShow/hide protein sequence
MPKVPRCRRRKQKVGRVKVEDKAREEVEKKAEEETLLKQREDKGKDIVEASSDLEVSETEEPRLPYNRFINNLARAKYAEMLRRDFLFEQGFGDDLPRFLRIGIGNHGWS
QFCAKPDPVNSNIVREFYANIDDQEEFQAIVRGVPVDWSPGAINSLFNLQDSPHVCFNEMVVAPSNDQLNATVREVGIEGA