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Lag0000544 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000544
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr4:9646892..9647374
RNA-Seq ExpressionLag0000544
SyntenyLag0000544
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0675595.1 hypothetical protein [Gossypium aridum]4.4e-0834.4Show/hide
Query:  MHTDASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRASQTT
        +H DA++  N S+S  G+V  D  G L+  +T       SP  VE  A LEG++L   L +  + L  DS  +I    +   + + I A I DI+  ++ 
Subjt:  MHTDASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRASQTT

Query:  FQKVRFQYTSRRFNGLAHKLAKSSF
        FQ + FQYT R  N +AH++ K +F
Subjt:  FQKVRFQYTSRRFNGLAHKLAKSSF

MBA0729380.1 hypothetical protein [Gossypium laxum]4.4e-0832.26Show/hide
Query:  MHTDASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRASQTT
        +H D +F      S  G+V+ D+MG L+  +T+ +L   S    E  A L  ++L   +    +T+  DS ++I      V     I A ISDI+     
Subjt:  MHTDASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRASQTT

Query:  FQKVRFQYTSRRFNGLAHKLAKSS
        FQ++RFQ+ +R  N LAH++AK +
Subjt:  FQKVRFQYTSRRFNGLAHKLAKSS

MBA0733287.1 hypothetical protein [Gossypium gossypioides]8.9e-0936.07Show/hide
Query:  MHTDASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRASQTT
        +H DA++  N S+S  G+V  D  G LVA++T+      SP   E  A LEG++L   L +  + L  DS ++I    +   + ++I A I DI+  +T 
Subjt:  MHTDASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRASQTT

Query:  FQKVRFQYTSRRFNGLAHKLAK
        FQ + FQY  R  N  AH++AK
Subjt:  FQKVRFQYTSRRFNGLAHKLAK

TXG69190.1 hypothetical protein EZV62_004125 [Acer yangbiense]5.2e-0936.99Show/hide
Query:  MHTDASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRA--SQ
        ++TDA+       +GIG+VIRD  G+++A    S  G + P  VE VAVL G RLA +  +   ++ SDSLS++N+IN +    A I   + DI A  S 
Subjt:  MHTDASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRA--SQ

Query:  TTFQKVRFQYTSRRFNGLAHKLAKSSF-LSRYHLWLGNYPRWIDDV
        + F  V F    R  N +AH LAK S      H+WL + P  ++ +
Subjt:  TTFQKVRFQYTSRRFNGLAHKLAKSSF-LSRYHLWLGNYPRWIDDV

XP_042972972.1 uncharacterized protein LOC122304773 [Carya illinoinensis]3.4e-0828.19Show/hide
Query:  MHTDASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRASQTT
        ++ D +   NQ ++GIG ++RD  G ++   +           +E++A+  GL+L + L ++ L + SD+L+L+  +       A +   I D +   + 
Subjt:  MHTDASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRASQTT

Query:  FQKVRFQYTSRRFNGLAHKLAKSSF-LSRYHLWLGNYPRWIDDVSFQER
        F     +YT R  N  AHKLA+ ++ +S  +LW G++P  I  V + ER
Subjt:  FQKVRFQYTSRRFNGLAHKLAKSSF-LSRYHLWLGNYPRWIDDVSFQER

TrEMBL top hitse value%identityAlignment
A0A5C7IIT4 Uncharacterized protein2.5e-0936.99Show/hide
Query:  MHTDASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRA--SQ
        ++TDA+       +GIG+VIRD  G+++A    S  G + P  VE VAVL G RLA +  +   ++ SDSLS++N+IN +    A I   + DI A  S 
Subjt:  MHTDASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRA--SQ

Query:  TTFQKVRFQYTSRRFNGLAHKLAKSSF-LSRYHLWLGNYPRWIDDV
        + F  V F    R  N +AH LAK S      H+WL + P  ++ +
Subjt:  TTFQKVRFQYTSRRFNGLAHKLAKSSF-LSRYHLWLGNYPRWIDDV

A0A7J8WKK7 Uncharacterized protein2.1e-0834.4Show/hide
Query:  MHTDASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRASQTT
        +H DA++  N S+S  G+V  D  G L+  +T       SP  VE  A LEG++L   L +  + L  DS  +I    +   + + I A I DI+  ++ 
Subjt:  MHTDASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRASQTT

Query:  FQKVRFQYTSRRFNGLAHKLAKSSF
        FQ + FQYT R  N +AH++ K +F
Subjt:  FQKVRFQYTSRRFNGLAHKLAKSSF

A0A7J9AZD2 RNase H domain-containing protein2.1e-0832.26Show/hide
Query:  MHTDASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRASQTT
        +H D +F      S  G+V+ D+MG L+  +T+ +L   S    E  A L  ++L   +    +T+  DS ++I      V     I A ISDI+     
Subjt:  MHTDASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRASQTT

Query:  FQKVRFQYTSRRFNGLAHKLAKSS
        FQ++RFQ+ +R  N LAH++AK +
Subjt:  FQKVRFQYTSRRFNGLAHKLAKSS

A0A7J9BAA2 Uncharacterized protein (Fragment)4.3e-0936.07Show/hide
Query:  MHTDASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRASQTT
        +H DA++  N S+S  G+V  D  G LVA++T+      SP   E  A LEG++L   L +  + L  DS ++I    +   + ++I A I DI+  +T 
Subjt:  MHTDASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRASQTT

Query:  FQKVRFQYTSRRFNGLAHKLAK
        FQ + FQY  R  N  AH++AK
Subjt:  FQKVRFQYTSRRFNGLAHKLAK

A0A803P4Z1 Uncharacterized protein2.1e-0836Show/hide
Query:  MHTDASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRASQTT
        ++ DA+   +Q  SG+ +VIRD  G LVA + +   GC+S L  E +A+  GL+L  ++N K   L SD+ + IN +       A     + DI +S   
Subjt:  MHTDASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRASQTT

Query:  FQKVRFQYTSRRFNGLAHKLAKSSF
           V  QY SR  N +AH LAK +F
Subjt:  FQKVRFQYTSRRFNGLAHKLAKSSF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein5.4e-0427.34Show/hide
Query:  DASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRASQTTFQK
        DA F   +  +  G +IR+  G  ++  ++      +PL  E  A+L  L+         + +  D  +LIN+IN  +   +S+A  + DI      F  
Subjt:  DASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRASQTTFQK

Query:  VRFQYTSRRFNGLAHKLAK-SSFLSRYHLWLGNYPRWID
        ++F +  R+ N LAH LAK     S ++   G+ P W+D
Subjt:  VRFQYTSRRFNGLAHKLAK-SSFLSRYHLWLGNYPRWID


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATACCGATGCATCTTTTCTGGGGAATCAGAGTACCTCTGGCATAGGAATTGTTATACGTGACAAAATGGGATATTTGGTGGCGGTGCAGACTCTATCCTCTCTGGG
ATGTATTTCTCCTTTGGGTGTGGAAGTTGTTGCAGTTTTAGAAGGGTTGCGTCTGGCTAGTAAGTTAAATGTAAAGTGCCTTACTCTTTTTTCAGACTCCTTGTCCCTGA
TAAATATGATCAATGATGTAGTAGAGGAGGATGCTAGTATTGCAGCAACAATATCGGATATTAGAGCAAGTCAAACAACCTTTCAGAAAGTGAGGTTCCAGTACACTAGT
CGTCGTTTTAATGGTCTTGCTCATAAGCTGGCAAAATCATCTTTTCTTTCACGTTATCATTTATGGTTAGGTAACTATCCTAGATGGATAGATGATGTATCGTTCCAAGA
GCGGTCGTTTTTTGTACCCCAGTGGGGATTTGATTTTTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATACCGATGCATCTTTTCTGGGGAATCAGAGTACCTCTGGCATAGGAATTGTTATACGTGACAAAATGGGATATTTGGTGGCGGTGCAGACTCTATCCTCTCTGGG
ATGTATTTCTCCTTTGGGTGTGGAAGTTGTTGCAGTTTTAGAAGGGTTGCGTCTGGCTAGTAAGTTAAATGTAAAGTGCCTTACTCTTTTTTCAGACTCCTTGTCCCTGA
TAAATATGATCAATGATGTAGTAGAGGAGGATGCTAGTATTGCAGCAACAATATCGGATATTAGAGCAAGTCAAACAACCTTTCAGAAAGTGAGGTTCCAGTACACTAGT
CGTCGTTTTAATGGTCTTGCTCATAAGCTGGCAAAATCATCTTTTCTTTCACGTTATCATTTATGGTTAGGTAACTATCCTAGATGGATAGATGATGTATCGTTCCAAGA
GCGGTCGTTTTTTGTACCCCAGTGGGGATTTGATTTTTTCTGA
Protein sequenceShow/hide protein sequence
MHTDASFLGNQSTSGIGIVIRDKMGYLVAVQTLSSLGCISPLGVEVVAVLEGLRLASKLNVKCLTLFSDSLSLINMINDVVEEDASIAATISDIRASQTTFQKVRFQYTS
RRFNGLAHKLAKSSFLSRYHLWLGNYPRWIDDVSFQERSFFVPQWGFDFF