CuGenDBv2

Gene ID	Lag0000556
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	biogenesis of lysosome-related organelles complex 1 subunit 2
Genome location	chr4:9843306..9845282
RNA-Seq Expression	Lag0000556
Synteny	Lag0000556
Gene Ontology terms	NA
InterPro domains	IPR019269 - Biogenesis of lysosome-related organelles complex-1, subunit 2

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7036775.1 Kanadaptin [Cucurbita argyrosperma subsp. argyrosperma]

2.7e-40

83.62

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Query:  MAGKEE-RLPNRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVI
        MA KEE +LPN DELAESLNEFFTS          GSSNQLALLEKMN+RVAEEYKG GDVASGMRVFVEQLK+KSGGFDEYINQIEKIE+QVTEFEAVI
Subjt:  MAGKEE-RLPNRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVI

Query:  SMLDKHVSMLESKVLS
        SMLDKH+SMLESKVLS
Subjt:  SMLDKHVSMLESKVLS

XP_004137147.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis sativus]

9.0e-44

87.83

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Query:  MAGKEERLPNRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVIS
        MA KEERLPNRD+LAESLNEFFTS          GSSNQL LLE+MNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVIS
Subjt:  MAGKEERLPNRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVIS

Query:  MLDKHVSMLESKVLS
        MLDKHVSMLESKVLS
Subjt:  MLDKHVSMLESKVLS

XP_008455567.1 PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis melo]

1.7e-42

86.09

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Query:  MAGKEERLPNRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVIS
        MA KEERLPNRDELAESLNEFFTS          GSSNQL LLE+MN RVAEEYKG+GDVASGMRVFVEQLKSKSGGFDEYI+QIEKIEHQVTEFEAVIS
Subjt:  MAGKEERLPNRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVIS

Query:  MLDKHVSMLESKVLS
        MLDKHVSMLESKVLS
Subjt:  MLDKHVSMLESKVLS

XP_022949044.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita moschata]

1.6e-40

84.48

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Query:  MAGKEE-RLPNRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVI
        MA KEE +LPN DELAESLNEFFTS          GSSNQLALLEKMNLRVAEEYKG GDVASGMRVFVEQLK+KSGGFDEYINQIEKIE+QVTEFEAVI
Subjt:  MAGKEE-RLPNRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVI

Query:  SMLDKHVSMLESKVLS
        SMLDKH+SMLESKVLS
Subjt:  SMLDKHVSMLESKVLS

XP_038880795.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Benincasa hispida]

7.6e-43

86.96

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Query:  MAGKEERLPNRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVIS
        MA KEE+ PNRDELAESLNEFFTS          GSSNQLALLE+MNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYI+QIEKIEHQVTEFEAVIS
Subjt:  MAGKEERLPNRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVIS

Query:  MLDKHVSMLESKVLS
        MLDKHVSMLESKVLS
Subjt:  MLDKHVSMLESKVLS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KW18 Uncharacterized protein

4.4e-44

87.83

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Query:  MAGKEERLPNRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVIS
        MA KEERLPNRD+LAESLNEFFTS          GSSNQL LLE+MNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVIS
Subjt:  MAGKEERLPNRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVIS

Query:  MLDKHVSMLESKVLS
        MLDKHVSMLESKVLS
Subjt:  MLDKHVSMLESKVLS

A0A1S3C0T0 biogenesis of lysosome-related organelles complex 1 subunit 2

8.2e-43

86.09

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Query:  MAGKEERLPNRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVIS
        MA KEERLPNRDELAESLNEFFTS          GSSNQL LLE+MN RVAEEYKG+GDVASGMRVFVEQLKSKSGGFDEYI+QIEKIEHQVTEFEAVIS
Subjt:  MAGKEERLPNRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVIS

Query:  MLDKHVSMLESKVLS
        MLDKHVSMLESKVLS
Subjt:  MLDKHVSMLESKVLS

A0A6J1GBP4 biogenesis of lysosome-related organelles complex 1 subunit 2

7.7e-41

84.48

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Query:  MAGKEE-RLPNRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVI
        MA KEE +LPN DELAESLNEFFTS          GSSNQLALLEKMNLRVAEEYKG GDVASGMRVFVEQLK+KSGGFDEYINQIEKIE+QVTEFEAVI
Subjt:  MAGKEE-RLPNRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVI

Query:  SMLDKHVSMLESKVLS
        SMLDKH+SMLESKVLS
Subjt:  SMLDKHVSMLESKVLS

A0A6J1KEZ0 biogenesis of lysosome-related organelles complex 1 subunit 2

7.7e-41

84.48

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Query:  MAGKEE-RLPNRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVI
        MA KEE +LPN DELAESLNEFFTS          GSSNQLALLEKMNLRVAEEYKG GDVASGMRVFVEQLK+KSGGFDEYINQIEKIE+QVTEFEAVI
Subjt:  MAGKEE-RLPNRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVI

Query:  SMLDKHVSMLESKVLS
        SMLDKH+SMLESKVLS
Subjt:  SMLDKHVSMLESKVLS

A0A7J7IAJ2 Uncharacterized protein

3.5e-33

73.04

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Query:  MAGKEERLPNRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVIS
        MAGK+E+   RDELAESLN+ FT+          GSSN L LLEKMNLRVAEEYKG+GDVASG+RVFVEQLKSKSG FDEY+ QI+ IE QVTEFEAVIS
Subjt:  MAGKEERLPNRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVIS

Query:  MLDKHVSMLESKVLS
        MLDK+VS+LESKV S
Subjt:  MLDKHVSMLESKVLS

SwissProt top hits

e value

%identity

Alignment

F4K657 Biogenesis of lysosome-related organelles complex 1 subunit 2

1.4e-26

60.58

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Query:  NRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSML
        +RD+LAESL   FTS          G++N L LLEKMNLRVA EY   GDVA+G+RVF EQ+KSKSGG DE++ Q++ IE QV+EFEAVIS+LD++VS+L
Subjt:  NRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSML

Query:  ESKV
        ESK+
Subjt:  ESKV

Q54Y67 Biogenesis of lysosome-related organelles complex 1 subunit 2

9.2e-07

33.02

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Query:  LPNRDELAESLNEFFTSGSS---NQLA-------LLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVS
        LP  ++L  S  E FT  SS   ++LA       LL +MN   + +Y+   +V  G+ VF+  LK K   F  Y ++I +++  VT+ E  + +LD++  
Subjt:  LPNRDELAESLNEFFTSGSS---NQLA-------LLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVS

Query:  MLESKV
         LE KV
Subjt:  MLESKV

Arabidopsis top hits

e value

%identity

Alignment

AT5G49550.1 Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction with BLOS1.

9.7e-28

60.58

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Query:  NRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSML
        +RD+LAESL   FTS          G++N L LLEKMNLRVA EY   GDVA+G+RVF EQ+KSKSGG DE++ Q++ IE QV+EFEAVIS+LD++VS+L
Subjt:  NRDELAESLNEFFTS----------GSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSML

Query:  ESKV
        ESK+
Subjt:  ESKV

Sequences

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CDS sequence

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ATGGCCGGAAAAGAGGAACGCTTGCCGAATAGAGACGAGCTCGCTGAATCCCTCAACGAATTCTTCACCAGCGGATCAAGTAATCAGCTGGCACTTTTAGAGAAAATGAA
TCTCAGGGTGGCCGAAGAGTACAAAGGTTTTGGCGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAATTGAAGTCAAAGAGTGGTGGCTTTGATGAGTATATAAACC
AGATTGAGAAAATAGAGCATCAGGTGACTGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCATGTTTCCATGCTGGAGTCGAAAGTGTTGTCCAATCTTTGTTTAGTT
AGTTTTGATTGGTATGGGGAAATAGCCCTCTCTCAGAAACTGTTCTTGGTGTCTGTCTGTTATACAGTGATACCATTCTACCGTGCATTTGAGGGAAGAACTTCTTCTGA
TAGCAGGGAGATCCGAAACCAGACTCTGCATTCACCATGGAGCAGTGAATCTCATGGGATAAAGGTATTATAA

mRNA sequence

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Protein sequence

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MAGKEERLPNRDELAESLNEFFTSGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSNLCLV
SFDWYGEIALSQKLFLVSVCYTVIPFYRAFEGRTSSDSREIRNQTLHSPWSSESHGIKVL

Lag0000556 (gene) of Sponge gourd (AG-4) v1 genome