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Lag0000558 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000558
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr4:9910983..9911405
RNA-Seq ExpressionLag0000558
SyntenyLag0000558
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034095.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.4e-1047.78Show/hide
Query:  KYNPLFE------PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDDQP
        +YN L E      P  +I++VM+T+  T E+RMAE+++ +N LMKA+EERD +I  LK  IE++   ESS T  +KN NKGK I+Q+ QP
Subjt:  KYNPLFE------PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDDQP

KAA0036729.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-0950.65Show/hide
Query:  PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDDQP
        P  +I++VM+T+  T E RMAE+++ +N LMKA+EERD +I  LK  IE+    ESS T  +KN NKGK I+Q+ QP
Subjt:  PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDDQP

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]9.2e-1050.65Show/hide
Query:  PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDDQP
        P  +I++VM+T+  T E+RMAE+++ +N LMKA+EERD +I  LK  IE++   ESS T  +KN NKGK I+Q+ QP
Subjt:  PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDDQP

KAA0048375.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]1.6e-0941.18Show/hide
Query:  DKFLVKYNPLFE-------------PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDD
        D  ++K NP  +             P  +I++VM+T+  T E+RMAE+++ +N LMKA+EERD +I  LK  I+++   ESS T+ +KN NKGK I+Q+ 
Subjt:  DKFLVKYNPLFE-------------PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDD

Query:  QP
        QP
Subjt:  QP

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-1050.65Show/hide
Query:  PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDDQP
        P  +I++VM+T+  T E+RMAE+++ +N LMKA+EERD +I  LK  IE++  +ESS T ++KN NKGK I+Q+ QP
Subjt:  PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDDQP

TrEMBL top hitse value%identityAlignment
A0A5A7SY17 Ty3-gypsy retrotransposon protein2.6e-1047.78Show/hide
Query:  KYNPLFE------PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDDQP
        +YN L E      P  +I++VM+T+  T E+RMAE+++ +N LMKA+EERD +I  LK  IE++   ESS T  +KN NKGK I+Q+ QP
Subjt:  KYNPLFE------PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDDQP

A0A5A7T5T3 Ty3-gypsy retrotransposon protein5.8e-1050.65Show/hide
Query:  PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDDQP
        P  +I++VM+T+  T E RMAE+++ +N LMKA+EERD +I  LK  IE+    ESS T  +KN NKGK I+Q+ QP
Subjt:  PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDDQP

A0A5A7TZU9 Ribonuclease H4.4e-1050.65Show/hide
Query:  PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDDQP
        P  +I++VM+T+  T E+RMAE+++ +N LMKA+EERD +I  LK  IE++   ESS T  +KN NKGK I+Q+ QP
Subjt:  PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDDQP

A0A5A7U9H0 Ty3-gypsy retrotransposon protein6.9e-1150.65Show/hide
Query:  PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDDQP
        P  +I++VM+T+  T E+RMAE+++ +N LMKA+EERD +I  LK  IE++  +ESS T ++KN NKGK I+Q+ QP
Subjt:  PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDDQP

A0A5D3BY32 Retrotransposon protein putative ty3-gypsy sub-class7.6e-1041.18Show/hide
Query:  DKFLVKYNPLFE-------------PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDD
        D  ++K NP  +             P  +I++VM+T+  T E+RMAE+++ +N LMKA+EERD +I  LK  I+++   ESS T+ +KN NKGK I+Q+ 
Subjt:  DKFLVKYNPLFE-------------PDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQIENQHILESSQTQVVKNHNKGKTIVQDD

Query:  QP
        QP
Subjt:  QP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTTCAAGACTTCTTCAATGGTCGTTGTCATGAACAAGTCTTACATTAGTTCTACTGCCCATTGTTGCTTCAATGAACTAACGTTGCAAGAAGATAAAGCTTTTAT
CGTTGCAGGCCAAGAAAAAACCTTGCAAGGGGTATATACTAATGACAAGTTTCTTGTTAAATATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGA
CTGAGACAAGGACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCCATTGAAGAAAGAGATTCTCAAATTGAGCACCTAAAGATTCAA
ATTGAGAACCAACATATCCTAGAATCAAGTCAAACCCAAGTCGTAAAAAATCACAACAAAGGAAAGACTATAGTGCAAGATGATCAACCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGTTCAAGACTTCTTCAATGGTCGTTGTCATGAACAAGTCTTACATTAGTTCTACTGCCCATTGTTGCTTCAATGAACTAACGTTGCAAGAAGATAAAGCTTTTAT
CGTTGCAGGCCAAGAAAAAACCTTGCAAGGGGTATATACTAATGACAAGTTTCTTGTTAAATATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGA
CTGAGACAAGGACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCCATTGAAGAAAGAGATTCTCAAATTGAGCACCTAAAGATTCAA
ATTGAGAACCAACATATCCTAGAATCAAGTCAAACCCAAGTCGTAAAAAATCACAACAAAGGAAAGACTATAGTGCAAGATGATCAACCATAG
Protein sequenceShow/hide protein sequence
MLFKTSSMVVVMNKSYISSTAHCCFNELTLQEDKAFIVAGQEKTLQGVYTNDKFLVKYNPLFEPDSDIVTVMMTETRTMEERMAEMQEHINTLMKAIEERDSQIEHLKIQ
IENQHILESSQTQVVKNHNKGKTIVQDDQP