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Lag0000569 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000569
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description50S ribosomal protein L1
Genome locationchr4:10253232..10253588
RNA-Seq ExpressionLag0000569
SyntenyLag0000569
Gene Ontology termsGO:0000470 - maturation of LSU-rRNA (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581968.1 hypothetical protein SDJN03_21970, partial [Cucurbita argyrosperma subsp. sororia]6.9e-3579.09Show/hide
Query:  ASQSEPNPDPGSSPDEFSRRTPRSVPFQPVSYAIKPKPQSAQDLDSQESPESP-PPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDRV
        +SQSE NPDP S P+E S RTPRS P QPVSYAIKPKPQS QD DS ESP+ P  PR+PPPS EGRRTWTREDIR MKDTP+IAPVSYPSRVA LPEDRV
Subjt:  ASQSEPNPDPGSSPDEFSRRTPRSVPFQPVSYAIKPKPQSAQDLDSQESPESP-PPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDRV

Query:  SAFGEGEEGV
        SA G GEEGV
Subjt:  SAFGEGEEGV

KAG6606834.1 hypothetical protein SDJN03_00176, partial [Cucurbita argyrosperma subsp. sororia]4.1e-3577.48Show/hide
Query:  ASQSEPNPDPGSSPDEFSRR--TPRSVPFQPVSYAIKPKPQSAQDLDSQESPESPPPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDR
        +SQSE +PDP S P+E S +  T RS P QPVSYAIK KPQSAQDLDS ES +SPPPR+PPPS EGRR+WTREDIR MKDTPSIAPVSYPSRVA LPEDR
Subjt:  ASQSEPNPDPGSSPDEFSRR--TPRSVPFQPVSYAIKPKPQSAQDLDSQESPESPPPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDR

Query:  VSAFGEGEEGV
        VSA GEGEE V
Subjt:  VSAFGEGEEGV

XP_022948447.1 uncharacterized protein LOC111452129 [Cucurbita moschata]5.7e-3779.28Show/hide
Query:  ASQSEPNPDPGSSPDEFSRR--TPRSVPFQPVSYAIKPKPQSAQDLDSQESPESPPPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDR
        +SQSE +PDP S P+E S +  TPRS P QPVSYAIKPKPQSAQDLDS ES +SPPPR+PPPS EGRR+WTREDIR MKDTPSIAPVSYPSRVA LPEDR
Subjt:  ASQSEPNPDPGSSPDEFSRR--TPRSVPFQPVSYAIKPKPQSAQDLDSQESPESPPPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDR

Query:  VSAFGEGEEGV
        VSA GEGEE V
Subjt:  VSAFGEGEEGV

XP_022980111.1 uncharacterized protein LOC111479599 [Cucurbita maxima]1.1e-3580.91Show/hide
Query:  ASQSEPNPDPGSSPDEFSRRTPRSVPFQPVSYAIKPKPQSAQDLDSQESPESP-PPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDRV
        +SQSE NPDP S P+E S RTPRSVP QPVSYAIKPKPQS QD DS ESP+ P  PR+PPPSSEGR TWTREDIR MKDTPSIAPVSYPSRVA LPEDRV
Subjt:  ASQSEPNPDPGSSPDEFSRRTPRSVPFQPVSYAIKPKPQSAQDLDSQESPESP-PPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDRV

Query:  SAFGEGEEGV
        SA G GEEGV
Subjt:  SAFGEGEEGV

XP_023524712.1 uncharacterized protein LOC111788572 [Cucurbita pepo subsp. pepo]4.8e-3678.38Show/hide
Query:  ASQSEPNPDPGSSPDEFSRR--TPRSVPFQPVSYAIKPKPQSAQDLDSQESPESPPPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDR
        +SQSE +PDP S P+E S +  T RS P QPVSYAIKPKPQSAQDLDS ES +SPPPR+PPPS EGRR+WTREDIR MKDTPSIAPVSYPSRVA LPEDR
Subjt:  ASQSEPNPDPGSSPDEFSRR--TPRSVPFQPVSYAIKPKPQSAQDLDSQESPESPPPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDR

Query:  VSAFGEGEEGV
        VSA GEGEE V
Subjt:  VSAFGEGEEGV

TrEMBL top hitse value%identityAlignment
A0A6J1DHL5 uncharacterized protein LOC1110209885.6e-3066.1Show/hide
Query:  FHFASQSEPNPDPGSSPDEFSRRTPRSVPFQPVSYAIKPKPQSAQDLDSQE-----SPESPPPRQP--PPSSEGRRTWTREDIRCMKDTPSIAPVSYPSR
        FH +  SEPNPD  S P+E SRRTPRSVP QPVSY++KPKP+SAQD DS E     SP SPPPR+P  P S E RRTWTRED+R MKD PSI PVSYP+R
Subjt:  FHFASQSEPNPDPGSSPDEFSRRTPRSVPFQPVSYAIKPKPQSAQDLDSQE-----SPESPPPRQP--PPSSEGRRTWTREDIRCMKDTPSIAPVSYPSR

Query:  VALLPEDRVSAFGEGEEG
        VA LPED+ SA G+   G
Subjt:  VALLPEDRVSAFGEGEEG

A0A6J1G987 uncharacterized protein LOC1114521292.7e-3779.28Show/hide
Query:  ASQSEPNPDPGSSPDEFSRR--TPRSVPFQPVSYAIKPKPQSAQDLDSQESPESPPPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDR
        +SQSE +PDP S P+E S +  TPRS P QPVSYAIKPKPQSAQDLDS ES +SPPPR+PPPS EGRR+WTREDIR MKDTPSIAPVSYPSRVA LPEDR
Subjt:  ASQSEPNPDPGSSPDEFSRR--TPRSVPFQPVSYAIKPKPQSAQDLDSQESPESPPPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDR

Query:  VSAFGEGEEGV
        VSA GEGEE V
Subjt:  VSAFGEGEEGV

A0A6J1GVQ7 uncharacterized protein LOC1114575963.4e-3579.09Show/hide
Query:  ASQSEPNPDPGSSPDEFSRRTPRSVPFQPVSYAIKPKPQSAQDLDSQESPESP-PPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDRV
        +SQSE NPDP S P+E S RTPRS P QPVSYAIKPKPQS QD DS ESP+ P  PR+PPPS EGRRTWTREDIR MKDTP+IAPVSYPSRVA LPEDRV
Subjt:  ASQSEPNPDPGSSPDEFSRRTPRSVPFQPVSYAIKPKPQSAQDLDSQESPESP-PPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDRV

Query:  SAFGEGEEGV
        SA G GEEGV
Subjt:  SAFGEGEEGV

A0A6J1ISN8 uncharacterized protein LOC1114795995.2e-3680.91Show/hide
Query:  ASQSEPNPDPGSSPDEFSRRTPRSVPFQPVSYAIKPKPQSAQDLDSQESPESP-PPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDRV
        +SQSE NPDP S P+E S RTPRSVP QPVSYAIKPKPQS QD DS ESP+ P  PR+PPPSSEGR TWTREDIR MKDTPSIAPVSYPSRVA LPEDRV
Subjt:  ASQSEPNPDPGSSPDEFSRRTPRSVPFQPVSYAIKPKPQSAQDLDSQESPESP-PPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDRV

Query:  SAFGEGEEGV
        SA G GEEGV
Subjt:  SAFGEGEEGV

A0A6J1KH98 LOW QUALITY PROTEIN: uncharacterized protein LOC1114932082.1e-2972.97Show/hide
Query:  ASQSEPNPDPGSSPDEFSRR--TPRSVPFQPVSYAIKPKPQSAQDLDSQESPESPPPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDR
        +SQSE +PDP S P+E S +  TPRS P QPVSYAI PKPQSAQDLDS E  +S     PPPS EG   WTREDIR MKDTPSIAPVSYPSRVALLPEDR
Subjt:  ASQSEPNPDPGSSPDEFSRR--TPRSVPFQPVSYAIKPKPQSAQDLDSQESPESPPPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDR

Query:  VSAFGEGEEGV
        VSA GEGEE V
Subjt:  VSAFGEGEEGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G42710.1 Ribosomal protein L1p/L10e family3.0e-1245.28Show/hide
Query:  ASQSEPNPDPGSSPDEFSRRTPRSVPFQPVSYAIKPKPQSAQDLDSQESPESPPPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDRVS
        +S S  + D   SPD    R  ++V  +PVSYA KPK Q ++     ++ ES    Q P S+     WTRE+IR +KD+PSI PVSY  RVA LPEDRV+
Subjt:  ASQSEPNPDPGSSPDEFSRRTPRSVPFQPVSYAIKPKPQSAQDLDSQESPESPPPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDRVS

Query:  AFGEGE
           EG+
Subjt:  AFGEGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGGCCTTCCCTCCTTCCATTTCGCCTCTCAATCCGAACCCAACCCAGATCCCGGTTCTTCTCCTGATGAATTCTCTCGAAGAACCCCTCGCTCCGTTCCCTTTCA
GCCCGTCTCCTACGCCATCAAGCCCAAGCCCCAATCCGCTCAAGACCTTGATTCCCAAGAATCCCCCGAATCTCCTCCTCCACGACAGCCGCCGCCGAGCTCCGAAGGTC
GGAGGACGTGGACTCGCGAGGATATTCGTTGTATGAAGGATACTCCATCTATAGCTCCGGTGTCTTATCCGTCGCGTGTTGCTCTGCTTCCGGAAGATAGGGTTTCAGCT
TTTGGCGAAGGAGAAGAGGGTGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGGCCTTCCCTCCTTCCATTTCGCCTCTCAATCCGAACCCAACCCAGATCCCGGTTCTTCTCCTGATGAATTCTCTCGAAGAACCCCTCGCTCCGTTCCCTTTCA
GCCCGTCTCCTACGCCATCAAGCCCAAGCCCCAATCCGCTCAAGACCTTGATTCCCAAGAATCCCCCGAATCTCCTCCTCCACGACAGCCGCCGCCGAGCTCCGAAGGTC
GGAGGACGTGGACTCGCGAGGATATTCGTTGTATGAAGGATACTCCATCTATAGCTCCGGTGTCTTATCCGTCGCGTGTTGCTCTGCTTCCGGAAGATAGGGTTTCAGCT
TTTGGCGAAGGAGAAGAGGGTGTGTAG
Protein sequenceShow/hide protein sequence
MRGLPSFHFASQSEPNPDPGSSPDEFSRRTPRSVPFQPVSYAIKPKPQSAQDLDSQESPESPPPRQPPPSSEGRRTWTREDIRCMKDTPSIAPVSYPSRVALLPEDRVSA
FGEGEEGV