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Lag0000584 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0000584
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationchr4:10687995..10688324
RNA-Seq ExpressionLag0000584
SyntenyLag0000584
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
InterPro domainsIPR015712 - DNA-directed RNA polymerase, subunit 2
IPR037033 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHM88854.1 RNA polymerase beta subunit, partial [Lagenaria siceraria]3.8e-43100Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
        MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
Subjt:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
QJR52948.1 RNA polymerase beta subunit [Herpetospermum pedunculosum]3.8e-43100Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
        MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
Subjt:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
YP_009752742.1 RNA polymerase subunit beta [Cyclantheropsis parviflora]3.8e-43100Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
        MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
Subjt:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
YP_009752827.1 RNA polymerase subunit beta [Baijiania yunnanensis]3.8e-43100Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
        MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
Subjt:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
YP_009753697.1 RNA polymerase subunit beta [Trichosanthes nervifolia]3.8e-43100Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
        MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
Subjt:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
TrEMBL top hitse value%identityAlignment
A0A1S4ETZ9 DNA-directed RNA polymerase subunit beta1.8e-43100Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
        MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
Subjt:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
A0A1X9Q1B9 DNA-directed RNA polymerase subunit beta1.8e-43100Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
        MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
Subjt:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
A0A218KG28 DNA-directed RNA polymerase subunit beta1.8e-43100Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
        MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
Subjt:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
A0A249RZI0 DNA-directed RNA polymerase subunit beta1.8e-43100Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
        MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
Subjt:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
A0A2Z2CGF9 DNA-directed RNA polymerase subunit beta1.8e-43100Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
        MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
Subjt:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
SwissProt top hitse value%identityAlignment
A0ZZ27 DNA-directed RNA polymerase subunit beta1.0e-4395.6Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
        MLYLSPSRDEYYMVA GNSLALN GIQEEQ+VPARYRQEFLTI WEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
Subjt:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
A6MMB4 DNA-directed RNA polymerase subunit beta3.0e-4393.41Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
        M+YLSPSRDEYYMVA GNSLALN GIQEEQ+VPARYRQEFLTI WEQ+HLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
Subjt:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
Q0ZJ28 DNA-directed RNA polymerase subunit beta1.0e-4395.6Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
        MLYLSPSRDEYYMVA GNSLALN GIQEEQ+VPARYRQEFLTI WEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
Subjt:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
Q2L8Z9 DNA-directed RNA polymerase subunit beta1.0e-4395.6Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
        MLYLSPSRDEYYMVA GNSLALN GIQEEQ+VPARYRQEFLTI WEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
Subjt:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
Q4VZP1 DNA-directed RNA polymerase subunit beta4.9e-46100Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
        MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
Subjt:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
Arabidopsis top hitse value%identityAlignment
ATCG00190.1 RNA polymerase subunit beta6.8e-4391.21Show/hide
Query:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
        ML+LSPS+DEYYM+A GNSLALN GIQEEQ VPARYRQEFLTI WE+VHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS
Subjt:  MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTATTTATCACCAAGTCGAGATGAATACTATATGGTAGCGACAGGAAATTCTTTGGCACTGAATCCAGGTATTCAGGAAGAACAGATTGTTCCAGCTCGATATCG
TCAAGAATTCTTGACTATTGAATGGGAACAAGTTCATCTTCGAAGTATTTTTCCCTTCCAATATTTTTCTATTGGAGCTTCCCTCATTCCTTTTATCGAACATAATGATG
CGAATCGTGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTCCCGCTTTCGTTGCAGCTTGCAAAACTGCAGGTGGTCCTCTCGTCCCGAATTGCTGAGAGTTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTTATTTATCACCAAGTCGAGATGAATACTATATGGTAGCGACAGGAAATTCTTTGGCACTGAATCCAGGTATTCAGGAAGAACAGATTGTTCCAGCTCGATATCG
TCAAGAATTCTTGACTATTGAATGGGAACAAGTTCATCTTCGAAGTATTTTTCCCTTCCAATATTTTTCTATTGGAGCTTCCCTCATTCCTTTTATCGAACATAATGATG
CGAATCGTGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTCCCGCTTTCGTTGCAGCTTGCAAAACTGCAGGTGGTCCTCTCGTCCCGAATTGCTGAGAGTTCTTAG
Protein sequenceShow/hide protein sequence
MLYLSPSRDEYYMVATGNSLALNPGIQEEQIVPARYRQEFLTIEWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSLQLAKLQVVLSSRIAESS